genome.fa.s556.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  46  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11147883--11163668	361	43.6	359	71	11	5617	39	8	10	41	1.68
11148077--11151126	363	8.4	362	74	10	1137	40	8	9	41	1.69
11151444--11158456	180	39.0	182	74	8	4223	39	7	10	42	1.68
11151871--11152696	179	4.6	178	76	9	482	38	7	9	43	1.67
11152173--11152211	20	1.9	21	85	15	55	46	10	10	33	1.72
11153118--11153406	159	1.8	159	83	5	388	38	6	8	46	1.62
11153268--11158500	182	29.0	180	74	8	3381	39	8	10	42	1.68
11155310--11155395	28	3.2	28	71	15	92	33	4	6	54	1.48
11153268--11163668	537	19.2	538	74	9	5190	39	8	10	42	1.68
11158497--11158577	24	3.4	24	96	1	146	48	3	18	29	1.65
11158556--11159369	181	4.5	181	77	5	637	38	8	9	42	1.69
11158674--11163629	362	13.9	362	72	11	1174	39	8	9	42	1.68
11159397--11163668	181	24.0	180	75	8	2554	39	8	9	42	1.68
11160483--11161446	520	1.9	520	83	4	1255	41	8	9	41	1.68
11162456--11163668	180	6.8	171	76	10	568	39	7	10	42	1.69
11163746--11163782	19	1.9	19	94	0	65	40	5	10	43	1.63
11164923--11165003	27	3.0	27	77	12	71	48	2	0	49	1.14
11164978--11165025	17	2.6	19	78	21	57	47	0	2	50	1.12
11164983--11165022	17	2.4	17	91	4	64	47	0	2	50	1.14
11164936--11165036	25	4.5	22	68	20	59	49	0	0	48	1.14
11164954--11165034	9	9.0	9	75	16	53	49	0	1	49	1.08
11165544--11165612	17	3.9	17	75	17	61	56	1	1	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165909--11165967	30	2.0	30	87	9	86	52	0	0	47	1.00
11166174--11166215	14	2.9	14	80	16	50	50	0	0	50	1.00
11166169--11166240	19	3.9	18	75	13	58	44	0	1	54	1.08
11166169--11166240	38	1.9	36	86	5	99	44	0	1	54	1.08
11166319--11166429	26	4.5	24	78	16	97	47	1	0	50	1.11
11166348--11166408	10	6.0	10	72	24	56	50	0	0	49	1.00
11166321--11166407	41	2.2	40	82	14	99	48	0	0	51	1.00
11166345--11166404	16	3.9	16	86	6	79	50	0	0	50	1.00
11166655--11166720	17	4.0	15	74	18	51	46	3	0	50	1.16
11166668--11166709	20	2.0	21	82	13	52	47	2	0	50	1.14
11166838--11166881	13	3.5	13	81	6	54	54	0	0	45	0.99
11166854--11166941	18	4.4	20	73	20	69	51	1	0	47	1.08
11166831--11166902	30	2.5	29	80	13	85	54	2	0	43	1.15
11166842--11166924	30	2.8	30	78	7	89	51	1	0	46	1.08
11166911--11166947	19	1.9	19	89	10	58	56	0	0	43	0.99
11166913--11166945	16	2.1	16	88	11	50	57	0	0	42	0.98
11167454--11167489	17	2.1	17	89	0	54	47	0	2	50	1.15
11167519--11167632	7	15.9	7	69	23	60	50	2	1	45	1.26
11167524--11167629	4	27.5	4	71	19	50	49	2	1	46	1.27
11167499--11167573	34	2.2	35	85	7	100	48	2	2	46	1.30
11167805--11167856	9	5.7	9	82	13	61	42	0	0	57	0.98
11168116--11168159	16	2.5	18	85	10	56	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11168150--11168240	34	2.7	34	78	13	89	50	0	2	47	1.13
11168200--11168264	22	3.2	22	69	20	52	52	0	0	47	1.00
11168244--11168323	24	3.5	22	74	14	56	43	2	2	51	1.28
11168346--11168398	28	1.9	27	81	11	63	41	5	0	52	1.25
11168352--11168396	18	2.5	18	78	7	56	42	4	0	53	1.21
11168577--11168640	20	3.3	19	76	20	60	50	4	1	43	1.32
11168752--11168802	17	2.7	20	73	17	54	49	3	0	47	1.20
11168936--11168994	22	2.5	23	81	15	68	45	5	3	45	1.42
11169226--11169263	9	4.1	9	86	13	51	55	0	0	44	0.99
11169222--11169265	10	4.3	10	83	16	63	56	0	0	43	0.99
11169436--11169474	17	2.3	17	90	0	60	41	0	5	53	1.23
11169868--11169944	18	4.3	19	69	9	54	35	9	6	49	1.60
11170252--11170284	18	1.9	17	88	11	50	33	6	12	48	1.65
11170423--11170456	14	2.5	14	90	4	52	41	5	0	52	1.25
11170525--11170586	16	3.9	16	71	22	51	40	1	1	56	1.19
11170582--11170606	12	2.1	12	100	0	50	56	0	0	44	0.99
11171348--11171397	18	2.7	19	76	14	59	48	0	0	52	1.00
11171645--11171684	15	2.7	15	88	3	55	55	2	0	42	1.13
11171719--11171825	47	2.3	46	78	12	112	50	2	0	45	1.22
11171789--11171849	29	2.1	30	82	14	74	47	1	0	50	1.10
11172451--11172481	15	2.1	14	94	5	53	38	0	0	61	0.96
11172451--11172502	25	2.1	24	82	10	61	42	0	3	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11172989--11173029	18	2.4	17	87	4	55	43	0	4	51	1.23
11173523--11173696	40	4.3	40	85	2	213	20	13	21	43	1.87
11174081--11174131	25	2.0	25	85	7	68	50	0	0	49	1.00
11174201--11174336	61	2.2	64	75	11	138	47	3	0	47	1.25
11174367--11174448	30	2.8	30	82	12	91	51	0	2	46	1.14
11174940--11174997	30	2.0	29	83	10	73	46	1	1	50	1.22
11176171--11176223	15	3.7	15	80	9	67	45	0	0	54	0.99
11176195--11176236	14	3.0	14	86	6	50	45	2	0	52	1.13
11176267--11176329	19	3.3	18	75	16	56	46	3	1	49	1.27
11176623--11176687	18	3.5	19	74	17	64	49	0	3	47	1.17
11176626--11176694	20	3.6	19	71	28	58	49	0	2	47	1.16
11176813--11176844	15	2.1	15	94	0	55	56	0	0	43	0.99
11178056--11178084	15	1.9	15	100	0	58	48	0	0	51	1.00
11178265--11178305	19	2.2	19	86	0	55	46	0	4	48	1.23
11178703--11178739	18	2.1	18	90	10	58	37	2	2	56	1.28
11179306--11179863	179	3.1	179	78	6	599	37	6	12	43	1.69
11179993--11180044	21	2.3	23	87	6	81	48	0	0	51	1.00
11179991--11180045	14	3.9	16	71	23	52	47	0	0	52	1.00
11179998--11180058	21	3.0	21	80	17	67	49	1	0	49	1.10
11180052--11180129	20	3.9	20	80	9	88	50	1	0	48	1.09
11180049--11180117	25	2.8	23	80	20	70	49	1	0	49	1.09
11180285--11180325	15	2.8	16	78	14	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11180397--11180437	20	2.1	20	86	4	57	46	0	4	48	1.23
11180637--11180696	21	2.9	21	69	16	52	35	1	6	56	1.35
11181869--11181943	12	6.6	11	74	18	50	53	1	0	45	1.08
11181869--11181970	22	5.3	19	67	24	54	52	1	0	44	1.18
11182120--11182154	18	1.9	18	94	0	61	60	2	0	37	1.12
11182532--11182593	25	2.7	23	73	16	56	45	1	0	53	1.10
11182603--11182647	16	3.1	15	75	24	51	53	0	0	46	1.00
11183101--11183165	9	7.0	9	72	19	53	43	0	1	55	1.09
11183094--11183135	15	2.8	15	79	10	50	42	0	2	54	1.13
11183183--11183221	20	2.0	20	90	10	62	46	0	2	51	1.14
11183622--11183673	27	2.0	26	81	11	61	61	0	0	38	0.96
11183701--11183740	20	2.0	20	95	0	71	32	10	12	45	1.75
11183885--11183956	19	3.6	21	82	15	91	51	2	0	45	1.15
11183887--11183958	16	4.4	16	75	13	58	52	2	0	44	1.15
11184047--11184071	12	2.1	12	100	0	50	48	0	0	52	1.00
11184198--11184243	22	2.1	22	83	0	56	47	4	0	47	1.21
11184588--11184632	23	2.0	23	82	4	56	51	2	2	44	1.26
11184591--11184642	14	3.6	14	84	5	59	50	0	3	46	1.20
11185190--11185228	15	2.6	15	87	0	51	56	0	0	43	0.99
11185421--11185484	23	2.7	23	76	11	67	53	3	0	43	1.16
11185704--11185735	14	2.4	14	94	5	57	50	0	0	50	1.00
11186046--11186070	10	2.5	10	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11186247--11186293	19	2.6	18	86	3	58	53	0	4	42	1.20
11186653--11186694	14	3.1	14	76	16	52	47	0	7	45	1.30
11186720--11187156	181	2.4	177	76	8	416	40	9	8	42	1.67
11187256--11187338	30	2.6	31	78	16	91	46	2	3	46	1.33
11187315--11187352	14	2.5	15	83	8	51	50	0	0	50	1.00
11187477--11187521	3	15.0	3	81	9	56	35	0	2	62	1.08
11187831--11187878	16	2.9	16	81	12	62	45	0	2	52	1.12
11187804--11187888	25	3.4	25	79	14	95	51	1	1	45	1.16
11187970--11188018	19	2.6	19	78	18	57	61	4	0	34	1.15
11187969--11188016	16	3.3	14	78	18	53	60	4	0	35	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130