genome.fa.s556.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  24  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6349297--6349332	14	2.6	14	91	4	56	44	0	2	52	1.15
6349332--6349545	59	3.7	56	74	13	184	35	13	5	46	1.66
6349533--6349569	15	2.4	16	86	13	51	51	0	2	45	1.15
6349302--6349569	60	4.6	58	72	14	207	38	10	4	46	1.60
6353141--6353192	20	2.7	18	85	8	59	13	23	0	63	1.29
6353146--6353192	19	2.4	20	86	10	62	10	25	0	63	1.26
6353166--6353221	27	2.1	27	83	9	71	5	21	1	71	1.15
6354021--6354052	14	2.3	14	94	0	55	21	0	9	68	1.17
6362399--6362440	21	2.0	21	81	9	50	61	2	2	33	1.21
6362887--6362959	20	3.8	20	78	14	89	35	0	0	64	0.94
6362918--6362961	16	2.6	17	82	7	54	34	0	0	65	0.93
6362921--6362945	12	2.1	12	100	0	50	32	0	0	68	0.90
6362945--6362988	23	1.9	23	81	9	54	45	0	0	54	0.99
6363310--6363390	36	2.2	36	77	2	90	50	7	3	38	1.48
6376638--6376804	62	2.7	62	91	0	271	31	19	7	40	1.80
6379259--6379311	6	8.8	6	95	0	97	16	1	0	81	0.79
6379342--6379792	176	2.5	175	85	8	576	43	6	11	38	1.68
6379342--6379794	58	7.7	58	84	9	528	43	6	11	38	1.68
6383767--6383827	32	2.0	30	87	12	88	75	0	18	6	1.01
6384512--6384651	63	2.2	63	84	0	190	35	10	23	30	1.88
6385294--6385399	43	2.5	42	80	10	124	35	12	17	33	1.88
6385674--6385986	42	7.5	42	86	5	325	26	15	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6385674--6386077	123	3.2	123	81	6	402	25	15	20	38	1.91
6385680--6386067	84	4.7	84	82	8	352	25	15	19	39	1.91
6385681--6386098	42	10.0	42	81	8	306	25	15	20	38	1.92
6386127--6386315	87	2.2	87	92	0	306	37	13	15	34	1.86
6386152--6386297	45	3.3	45	67	5	127	28	14	19	37	1.91
6386045--6386415	187	1.9	190	88	5	554	37	13	16	33	1.87
6386220--6386426	100	2.1	100	90	1	326	42	12	14	30	1.83
6386579--6386621	11	3.8	11	82	14	52	25	6	0	67	1.15
6386577--6386621	24	1.9	24	90	4	74	28	6	0	64	1.19
6386577--6386625	13	3.9	13	82	15	59	28	6	0	65	1.16
6386589--6386637	13	3.6	14	81	13	57	26	4	0	69	1.06
6388598--6388634	15	2.4	16	86	13	51	45	0	2	51	1.15
6388595--6388635	16	2.6	16	84	7	57	46	0	2	51	1.14
6388597--6388647	17	3.1	17	80	8	52	45	0	5	49	1.26
6388493--6389019	118	4.5	115	81	7	472	42	6	11	39	1.67
6388507--6389018	238	2.2	235	85	4	656	42	6	11	39	1.67
6392539--6392592	25	2.2	26	83	6	67	24	3	0	72	1.01
6392537--6392633	24	4.0	24	76	20	85	25	4	0	70	1.05
6392564--6392633	27	2.8	23	80	16	77	24	4	0	71	1.04
6392536--6392634	17	5.9	16	76	18	87	25	4	0	70	1.04
6392536--6392676	42	3.3	41	77	14	119	24	4	0	69	1.13
6392559--6392642	23	3.4	24	78	15	82	23	4	0	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6392586--6392643	27	2.2	26	90	9	91	22	5	0	72	1.04
6392586--6392667	17	5.2	16	74	25	70	21	6	1	70	1.16
6392570--6392688	44	2.8	40	74	21	109	23	5	0	69	1.15
6393527--6393609	17	4.7	16	71	22	51	26	0	1	72	0.92
6393566--6393609	13	3.8	12	88	11	65	18	0	0	81	0.68
6393565--6393614	17	2.9	16	85	11	64	18	2	0	80	0.82
6393627--6394014	58	6.7	56	80	9	365	43	7	13	36	1.72
6393622--6394014	116	3.4	113	82	8	429	43	7	13	36	1.72
6393627--6394014	174	2.2	170	81	12	443	43	7	13	36	1.72
6401215--6401329	53	2.2	52	82	4	133	38	15	6	40	1.72
6401349--6401460	56	2.0	56	84	5	145	35	7	5	51	1.52
6403122--6403149	6	4.7	6	100	0	56	17	17	32	32	1.94
6403122--6403156	18	1.9	18	88	0	52	20	20	28	31	1.97
6420415--6420540	1	126.0	1	70	0	54	82	1	10	5	0.89
6420416--6420511	9	10.8	9	76	13	65	82	1	10	6	0.89
6420426--6420548	17	7.2	16	75	13	88	82	1	12	4	0.89
6420415--6420548	33	4.1	32	73	14	103	82	1	11	5	0.90
6422077--6422105	14	2.0	15	93	6	51	6	3	0	89	0.57
6421890--6422252	196	1.8	197	82	8	470	38	10	4	46	1.61
6423207--6423253	13	3.6	13	83	16	62	70	0	0	29	0.88
6423521--6423775	41	6.2	41	80	11	258	45	20	10	24	1.81
6423519--6423780	82	3.2	80	82	5	292	45	20	10	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6424188--6424230	22	2.0	22	85	0	59	46	13	4	34	1.65
6424465--6424855	200	2.0	200	88	0	584	34	20	11	34	1.88
6424802--6424933	62	2.1	62	85	2	176	29	27	8	34	1.86
6425632--6425665	15	2.3	15	89	0	50	8	11	0	79	0.94
6425622--6425707	28	3.1	28	76	16	83	8	15	0	76	1.00
6430083--6430135	25	2.0	26	82	7	63	39	1	3	54	1.29
6430205--6430246	22	1.9	22	90	0	66	73	4	0	21	1.01
6431064--6431115	4	12.8	4	83	4	68	73	0	1	25	0.94
6432099--6432150	23	2.3	23	87	6	72	53	3	11	30	1.54
6432439--6432545	22	4.9	22	73	4	81	35	26	12	26	1.91
6432538--6432587	22	2.3	22	92	0	82	34	30	16	20	1.94
6432444--6432590	66	2.2	66	79	4	145	34	27	12	25	1.92
6435025--6435059	17	2.1	17	89	10	54	51	28	5	14	1.65
6438244--6438436	40	4.8	39	72	12	122	36	12	13	36	1.83
6438403--6438488	40	2.1	41	85	4	122	34	11	12	40	1.80
6438484--6438639	22	7.1	22	74	12	106	35	26	10	26	1.90
6438502--6438607	44	2.4	45	84	9	130	33	26	12	27	1.92
6438484--6438643	66	2.4	66	80	6	155	35	27	10	26	1.90
6438546--6438688	22	6.5	21	74	9	81	36	28	8	26	1.86
6438705--6438745	20	2.0	20	85	0	55	75	21	0	2	0.92
6438727--6438771	6	7.5	6	92	0	54	77	13	6	2	1.05
6441146--6441201	7	8.5	6	75	24	51	42	35	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6441142--6441199	14	4.3	13	81	16	57	46	34	0	18	1.50
6441152--6441205	21	2.6	21	91	5	83	44	33	0	22	1.53
6441142--6441244	14	7.7	14	67	18	51	47	35	0	16	1.47
6441666--6441716	13	3.9	13	78	17	52	80	0	15	3	0.86
6444188--6444236	25	2.0	25	84	4	64	44	16	0	38	1.48
6444346--6444484	60	2.3	60	79	7	147	38	16	3	41	1.66
6444675--6444865	54	3.6	53	73	7	179	39	19	1	40	1.59
6444840--6444902	31	2.0	31	81	6	74	34	14	7	42	1.75
6445070--6445095	9	2.9	9	100	0	52	19	0	0	80	0.71
6445967--6446017	26	2.0	26	85	11	70	39	11	3	45	1.59
6446194--6446255	25	2.4	26	79	17	76	54	1	0	43	1.09
6446205--6446254	23	2.0	25	88	11	77	56	0	0	44	0.99
6446830--6446876	21	2.2	21	92	0	76	57	0	0	42	0.98
6446935--6447002	30	2.3	30	80	7	77	51	1	0	47	1.09
6450360--6450459	52	1.9	52	85	4	139	34	16	10	40	1.81
6451140--6451177	19	2.0	19	85	10	51	15	0	2	81	0.80
6451788--6451830	22	1.9	23	85	4	61	34	11	0	53	1.37
6452181--6452229	22	2.2	22	85	7	64	22	0	14	63	1.30
6454691--6454720	2	15.0	2	100	0	60	50	0	0	50	1.00
6454929--6454979	25	2.0	25	96	0	93	35	5	33	25	1.80
6457428--6457486	24	2.5	23	86	5	73	64	1	5	28	1.24
6457941--6458008	29	2.3	29	94	0	127	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6458183--6458235	22	2.4	22	87	3	79	39	1	9	49	1.46
6458509--6458562	23	2.2	24	84	15	76	57	1	5	35	1.33
6458508--6458564	24	2.3	25	85	8	82	57	1	5	35	1.31
6459598--6459636	19	2.1	19	100	0	78	10	35	10	43	1.73
6460291--6460316	13	2.0	13	100	0	52	46	0	7	46	1.31
6461055--6461097	22	2.0	22	85	0	59	74	4	6	13	1.19
6461278--6461347	31	2.2	32	82	7	81	52	5	4	37	1.45
6463355--6463510	52	3.0	53	82	5	167	28	20	7	44	1.77
6463536--6463577	11	3.8	11	87	0	66	50	26	0	23	1.50
6463536--6463578	22	2.0	22	95	0	77	48	25	0	25	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130