genome.fa.s556.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  2  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287871--287902	16	2.0	16	93	0	55	59	9	0	31	1.29
288674--288738	30	2.2	29	91	2	103	52	0	7	40	1.30
288684--288754	29	2.4	29	81	6	72	52	1	5	40	1.34
297565--297716	80	1.9	80	94	2	270	31	13	20	34	1.91
302551--302587	2	18.5	2	94	0	65	2	48	0	48	1.15
309697--309761	32	2.0	32	100	0	130	33	23	18	24	1.96
313245--313280	12	3.1	12	84	8	56	50	16	0	33	1.46
313309--313369	11	5.8	11	71	11	56	44	3	9	42	1.54
318021--318076	30	1.9	30	85	10	80	30	12	3	53	1.55
323284--323311	2	14.0	2	100	0	56	50	0	0	50	1.00
324396--324432	19	2.1	19	90	10	60	45	0	2	51	1.15
324793--324829	2	18.5	2	100	0	74	51	0	0	48	1.00
329838--329901	29	2.2	29	83	10	78	39	1	3	56	1.25
329855--329919	29	2.3	28	82	10	78	41	1	6	50	1.36
337838--337900	3	21.0	3	96	0	117	66	1	0	31	1.01
344153--344206	18	3.0	18	88	0	81	20	31	33	14	1.93
344231--344259	6	4.8	6	100	0	58	31	34	17	17	1.93
345673--345698	13	2.0	13	100	0	52	46	7	7	38	1.61
346728--346758	2	15.5	2	100	0	62	51	0	48	0	1.00
355260--355285	7	3.7	7	100	0	52	15	42	15	26	1.87
363843--363875	17	2.1	17	88	11	52	54	0	27	18	1.44
364441--364487	3	15.7	3	100	0	94	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365115--365156	14	2.9	15	82	7	50	50	0	0	50	1.00
365247--365286	2	20.5	2	94	5	73	50	0	0	50	1.00
367069--367098	11	2.7	11	89	0	51	0	23	0	76	0.78
371471--371531	2	31.0	2	80	3	70	50	0	0	49	1.00
371479--371525	23	2.0	23	87	0	67	48	0	0	51	1.00
387778--387824	10	4.5	10	82	10	58	61	0	0	38	0.96
387778--387825	4	12.0	4	90	0	51	60	0	0	39	0.97
388530--388580	5	9.8	5	80	16	59	23	1	0	74	0.92
389516--389575	19	3.3	18	75	11	59	66	3	0	30	1.07
389559--389601	20	2.2	19	84	12	52	58	2	2	37	1.24
391378--391456	15	5.2	15	74	8	79	54	1	2	41	1.22
391363--391456	8	12.5	8	67	17	58	52	1	2	44	1.20
391394--391464	23	3.0	24	89	10	110	52	1	2	43	1.24
391681--391732	27	2.0	27	85	11	72	51	9	0	38	1.35
395379--395432	24	2.3	23	84	9	65	68	1	0	29	1.00
395589--395631	19	2.3	19	84	8	52	27	0	2	69	1.00
403456--403506	18	2.9	18	82	11	61	17	1	3	76	1.03
403480--403506	14	1.9	14	100	0	54	22	0	0	77	0.76
403457--403506	17	2.9	18	80	14	61	18	2	2	78	0.95
403563--403751	56	3.3	56	80	14	190	51	3	9	35	1.51
403565--403944	59	6.4	57	70	18	179	51	3	9	34	1.52
403753--403785	15	2.3	15	90	10	52	57	0	15	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403797--403829	17	2.0	17	88	5	50	57	6	0	36	1.23
403763--403935	59	2.9	60	76	13	187	52	4	10	33	1.55
404894--404944	23	2.2	23	85	0	66	52	3	7	35	1.49
414836--414868	15	2.1	16	88	5	50	48	0	0	51	1.00
423359--423475	58	2.0	58	96	0	216	24	14	13	47	1.81
425515--425539	7	3.6	7	100	0	50	88	0	0	12	0.53
429917--429992	38	2.0	38	97	0	143	31	10	19	38	1.86
434373--434422	25	2.0	25	96	0	91	18	12	18	52	1.75
442597--442638	18	2.3	18	95	0	75	45	0	0	54	0.99
443063--443212	76	2.0	76	94	0	264	30	26	20	22	1.98
443641--443695	29	2.0	29	82	13	71	47	1	3	47	1.30
444030--444077	22	2.2	22	85	7	62	62	4	2	31	1.26
449417--449496	40	2.0	40	100	0	160	20	10	22	47	1.79
479162--479206	3	15.0	3	100	0	90	66	0	0	33	0.92
481570--481604	18	1.9	18	94	0	61	2	20	0	77	0.90
492507--492618	51	2.2	51	90	0	170	19	29	38	12	1.89
493716--493783	30	2.2	29	89	7	100	45	1	0	52	1.09
493719--493790	18	3.8	18	74	5	63	45	1	0	52	1.09
493818--493856	20	1.9	21	84	5	53	35	0	0	64	0.94
506750--506782	2	16.5	2	100	0	66	51	0	0	48	1.00
509983--510007	1	25.0	1	100	0	50	100	0	0	0	0.00
515166--515203	19	2.0	20	89	5	60	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515175--515203	13	2.3	13	94	5	51	79	0	0	20	0.74
517821--517864	20	2.3	19	88	4	61	59	0	2	38	1.10
517823--517887	13	5.5	11	78	12	58	63	0	1	35	1.04
517825--517892	24	2.8	24	75	8	66	61	0	1	36	1.05
517885--517951	35	1.9	35	81	6	82	46	0	0	53	1.00
517935--518007	37	1.9	38	84	13	98	46	1	1	50	1.18
517935--518010	38	2.0	38	82	12	93	46	1	1	51	1.17
518775--518803	12	2.3	13	94	5	51	72	24	3	0	1.00
524740--524819	39	2.1	39	92	0	133	40	10	16	33	1.82
528642--528934	149	2.0	149	93	1	507	33	17	15	34	1.91
543738--543790	16	3.0	16	78	21	61	41	0	0	58	0.98
543768--543815	25	1.9	25	86	0	69	41	0	4	54	1.20
543830--543885	19	3.0	19	82	10	62	44	0	7	48	1.30
543908--543981	22	3.3	22	71	12	69	37	6	4	51	1.47
543910--544000	47	1.9	48	84	6	123	38	6	4	50	1.48
556375--556454	35	2.2	37	88	6	119	37	6	15	41	1.72
572942--572966	13	1.9	13	100	0	50	12	16	40	32	1.84
577224--577305	14	5.6	15	71	15	55	71	0	17	10	1.13
577323--577362	15	3.0	13	86	13	55	67	0	12	20	1.22
577596--577673	30	2.6	30	80	10	88	44	3	14	37	1.63
578229--578255	2	13.5	2	100	0	54	48	0	0	51	1.00
578819--578896	41	1.9	39	85	12	104	17	7	2	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579950--579976	2	13.5	2	100	0	54	48	0	0	51	1.00
579962--580152	94	2.0	94	100	0	382	49	12	9	28	1.71
581716--581817	36	2.8	36	84	0	132	19	22	25	32	1.97
585042--585076	14	2.3	16	90	9	56	37	0	0	62	0.95
585770--585813	2	23.0	2	86	9	65	47	0	0	52	1.00
587032--587094	22	2.8	22	80	2	63	31	3	0	65	1.09
587034--587093	28	2.1	29	81	6	68	31	3	0	65	1.09
587723--587758	6	6.2	6	90	3	56	30	2	0	66	1.06
588099--588151	27	2.0	27	85	7	72	81	3	5	9	0.98
593621--593699	8	10.0	8	89	8	126	73	0	13	12	1.10
593621--593699	23	3.3	24	91	7	126	73	0	13	12	1.10
594720--595086	41	8.9	41	91	7	554	21	16	21	40	1.91
595096--595180	30	2.8	30	89	8	136	90	9	0	0	0.45
595094--595180	37	2.4	37	90	9	135	89	10	0	0	0.48
595095--595180	1	86.0	1	81	0	100	90	9	0	0	0.45
596113--596156	20	2.2	20	92	4	72	31	27	15	25	1.96
596218--596263	23	2.0	23	100	0	92	30	13	39	17	1.87
596220--596270	23	2.2	23	92	0	84	33	13	37	15	1.87
596507--596547	12	3.3	13	83	6	50	12	2	4	80	0.97
596628--597378	59	12.7	57	88	9	1080	44	8	13	34	1.73
596626--597378	116	6.4	117	92	5	1146	44	8	13	33	1.73
597106--597194	27	3.2	27	62	20	65	41	6	14	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597870--597913	20	2.2	20	87	4	61	31	0	0	68	0.90
598147--598180	11	3.0	11	87	8	50	32	17	23	26	1.97
598147--598181	12	3.0	12	91	4	54	34	17	22	25	1.96
598996--599274	125	2.2	126	82	6	339	48	4	5	42	1.44
598995--599274	130	2.2	128	82	6	345	48	4	5	42	1.44
599287--599325	18	2.0	20	85	9	55	30	0	2	66	1.05
599316--599393	40	2.0	38	90	5	120	47	5	5	42	1.47
600393--600436	14	3.1	14	77	6	52	54	0	11	34	1.36
602460--602537	33	2.3	33	84	2	111	57	7	0	34	1.27
606749--607296	30	17.3	30	73	11	272	37	25	26	10	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130