genome.fa.s556.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  36  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9046898--9046957	19	3.2	19	77	11	70	65	0	1	33	1.03
9046898--9046984	15	5.4	15	72	18	68	68	0	1	29	0.96
9046847--9046974	30	4.6	27	80	13	104	65	0	2	31	1.10
9047156--9047538	43	9.1	42	74	12	275	43	19	13	23	1.87
9047397--9047576	86	2.0	86	81	5	207	44	17	13	24	1.85
9048581--9048609	12	2.5	12	94	5	51	3	6	0	89	0.57
9055214--9055932	355	2.0	356	90	2	1126	24	16	19	39	1.92
9056197--9056234	20	2.0	20	89	5	60	39	18	2	39	1.65
9059633--9059668	14	2.6	14	91	4	56	25	0	8	66	1.19
9059554--9059755	97	2.1	96	86	3	282	35	6	5	51	1.53
9059573--9059773	95	2.1	96	81	3	235	37	7	5	48	1.56
9059761--9059797	16	2.2	18	80	14	51	75	2	2	18	1.04
9059764--9059797	5	6.4	5	87	12	50	76	2	2	17	1.04
9059820--9059878	3	19.3	3	77	10	57	62	3	1	32	1.21
9059815--9059893	21	3.8	20	74	14	63	60	3	1	34	1.23
9060330--9060381	23	2.3	22	83	9	61	57	7	5	28	1.50
9060330--9060372	21	2.0	22	86	4	61	60	9	4	25	1.47
9060628--9060734	26	4.0	25	73	19	85	67	0	1	30	1.02
9060650--9060734	15	5.8	15	73	20	65	67	0	1	31	0.99
9060648--9060734	3	29.3	3	73	21	53	67	0	1	31	0.98
9060648--9060739	23	4.0	22	74	20	73	67	1	1	30	1.05
9060661--9060728	31	2.1	34	86	8	81	64	0	1	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9062333--9062362	16	1.9	15	93	6	51	40	6	3	50	1.45
9063433--9063897	50	9.3	50	75	8	182	37	20	10	31	1.86
9063563--9063805	100	2.4	101	82	2	292	37	19	11	31	1.88
9063538--9063923	100	3.9	100	77	5	291	39	19	10	30	1.86
9066783--9066857	27	2.8	27	85	4	98	22	4	34	38	1.73
9071063--9071107	22	2.1	22	84	12	58	15	15	0	68	1.21
9089076--9089127	24	2.2	24	85	0	68	40	11	7	40	1.70
9091827--9091878	17	2.9	17	72	10	50	75	1	15	7	1.12
9092693--9092751	17	3.5	17	79	4	66	61	5	3	30	1.34
9092678--9092788	33	3.4	32	81	5	114	55	6	7	30	1.52
9094170--9095627	305	4.8	304	86	2	1910	33	14	15	37	1.87
9094175--9095659	608	2.4	607	87	2	2084	33	13	15	37	1.87
9095261--9095405	63	2.3	63	78	13	145	31	10	17	40	1.84
9100254--9100301	23	2.1	23	100	0	96	25	16	0	58	1.38
9100526--9100567	16	2.4	18	84	7	52	28	2	0	69	1.01
9100546--9100576	11	2.8	11	100	0	62	29	0	0	70	0.87
9100404--9100773	201	1.9	198	79	8	421	37	9	7	46	1.64
9101559--9101608	15	3.3	15	82	0	64	36	16	8	40	1.77
9101764--9101810	19	2.5	20	82	6	53	76	10	2	10	1.10
9105174--9105217	21	2.1	21	86	0	61	59	13	6	20	1.57
9106247--9106653	144	2.8	144	85	5	540	42	13	13	31	1.82
9108292--9108332	5	8.2	5	84	10	57	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9108292--9108332	15	2.7	15	88	11	66	85	0	14	0	0.60
9108981--9109024	20	2.1	21	83	4	54	68	0	15	15	1.22
9109346--9109375	13	2.3	13	100	0	60	50	6	10	33	1.62
9109611--9110399	47	16.8	47	76	7	592	31	16	12	39	1.85
9109790--9110403	140	4.3	140	78	5	538	31	15	11	40	1.84
9110700--9110764	10	6.5	10	72	13	53	46	16	9	27	1.78
9112828--9112878	21	2.4	21	77	6	59	43	35	0	21	1.53
9119240--9119273	8	4.2	8	92	0	59	61	0	0	38	0.96
9125883--9125986	44	2.4	44	77	11	106	21	8	3	66	1.35
9126750--9126800	17	3.0	17	85	5	59	68	0	25	5	1.12
9127116--9127220	54	1.9	55	86	1	149	43	7	15	33	1.75
9130160--9130247	8	11.6	7	75	17	54	76	3	6	13	1.12
9130184--9130245	25	2.5	25	87	7	90	77	3	9	9	1.10
9130384--9130427	10	4.4	10	88	5	63	52	0	0	47	1.00
9130601--9130642	17	2.4	18	88	4	59	73	0	0	26	0.83
9133256--9133345	33	2.8	33	73	19	82	47	0	4	47	1.22
9133305--9133349	21	2.1	22	87	4	65	51	0	2	46	1.13
9133517--9133557	19	2.2	19	100	0	82	36	19	4	39	1.73
9135994--9136114	61	2.0	60	91	3	199	35	10	9	44	1.71
9136552--9136599	13	3.5	13	78	10	60	68	0	2	29	1.01
9136544--9136598	28	2.0	28	92	0	92	65	0	1	32	1.03
9136552--9136599	7	7.0	7	77	13	55	68	0	2	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9141142--9141192	25	2.0	25	96	0	93	25	23	13	37	1.92
9146148--9146173	3	8.7	3	100	0	52	34	0	0	65	0.93
9146500--9146537	20	1.9	20	94	0	67	15	2	5	76	1.08
9147112--9147137	3	8.7	3	100	0	52	69	0	0	30	0.89
9147136--9147173	3	12.7	3	100	0	76	68	31	0	0	0.90
9148393--9148555	40	4.1	40	77	6	152	36	15	15	31	1.89
9148577--9148765	40	4.8	40	80	6	195	40	17	14	26	1.89
9148953--9149032	40	2.0	40	85	0	106	43	15	13	27	1.84
9149075--9149162	40	2.2	40	83	0	104	46	12	11	29	1.76
9158926--9158956	14	2.2	14	94	0	53	19	3	6	70	1.22
9158934--9158992	23	2.6	23	81	8	66	25	3	1	69	1.13
9159569--9159600	12	2.7	12	95	0	55	68	18	0	12	1.20
9160571--9161300	368	2.0	367	90	1	1142	45	9	12	33	1.74
9175875--9175917	21	2.0	21	90	0	68	39	20	11	27	1.88
9189159--9189190	14	2.1	16	88	11	50	12	6	12	68	1.37
9195783--9195828	19	2.4	19	85	7	58	43	17	10	28	1.82
9195778--9195828	9	5.4	9	79	9	57	45	19	9	25	1.81
9197043--9197076	18	1.9	18	88	5	52	23	8	5	61	1.47
9198229--9198910	129	5.3	129	76	9	434	39	17	6	36	1.75
9199273--9199312	14	2.9	14	84	0	53	77	0	22	0	0.77
9199271--9199308	19	2.1	18	90	5	58	81	0	18	0	0.69
9199272--9199300	15	2.0	15	93	6	51	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9199849--9199896	8	5.8	8	78	7	51	79	0	4	16	0.89
9199842--9199896	17	3.3	17	82	2	67	78	0	5	16	0.93
9199966--9200118	25	6.2	24	82	7	182	26	12	6	54	1.62
9199961--9200109	75	2.0	72	88	3	217	27	12	5	54	1.60
9200903--9200945	20	2.1	21	87	12	63	83	11	4	0	0.78
9203978--9204054	35	2.1	35	83	7	91	70	5	15	9	1.31
9204706--9204760	21	2.6	21	82	2	65	81	0	9	9	0.87
9204726--9204750	13	1.9	13	100	0	50	88	0	0	12	0.53
9205203--9205296	47	2.0	47	81	8	111	69	0	22	8	1.15
9206829--9206920	41	2.2	40	77	5	94	30	16	13	40	1.86
9206886--9206966	41	2.0	42	85	2	110	29	18	12	39	1.87
9207134--9207464	52	6.4	51	76	5	245	31	18	15	34	1.92
9207134--9207397	104	2.6	103	82	4	309	31	18	15	35	1.92
9207330--9207461	51	2.6	52	78	3	144	28	20	15	34	1.94
9207442--9207520	31	2.6	30	76	11	106	36	17	10	35	1.84
9207653--9207785	71	1.9	71	91	0	221	36	16	12	34	1.87
9207817--9207878	1	62.0	1	73	0	52	87	4	3	4	0.76
9208189--9208234	20	2.3	20	80	0	56	39	15	17	28	1.90
9209101--9209145	23	2.0	23	83	8	58	77	0	20	2	0.87
9210120--9210159	14	2.9	14	84	0	53	42	25	10	22	1.84
9210182--9210216	13	2.7	13	86	0	52	11	2	5	80	1.00
9210634--9210682	13	3.6	14	78	5	57	46	32	2	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9210699--9210757	13	4.5	13	75	12	50	42	30	0	27	1.56
9210699--9210757	26	2.3	26	80	13	68	42	30	0	27	1.56
9211747--9213387	130	12.7	130	74	12	464	39	15	6	37	1.75
9211748--9213387	260	6.3	256	75	9	1080	39	15	6	37	1.75
9212029--9213387	647	2.1	645	81	5	1600	39	16	6	37	1.75
9211747--9213387	517	3.2	509	75	10	1427	39	15	6	37	1.75
9213470--9214220	129	5.8	127	76	8	567	40	16	7	36	1.75
9214281--9214348	21	3.5	19	72	16	59	45	1	7	45	1.40
9214736--9215171	129	3.4	128	76	10	341	41	16	5	36	1.73
9215263--9215305	20	2.1	21	86	4	61	44	4	6	44	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130