Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  79  of  130  ( 15485 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15892818--15893285
100
4.7
99
77
8
358
44
14
8
33
1.74
15897733--15897785
21
2.5
21
96
0
97
18
20
9
50
1.74
15900446--15900484
20
2.0
20
90
5
62
2
20
0
76
0.90
15900512--15900559
13
3.8
12
84
13
53
0
12
2
85
0.69
15900512--15900562
20
2.5
21
87
6
70
0
13
1
84
0.71
15900512--15900559
7
7.1
7
81
6
55
0
12
2
85
0.69
15900513--15900555
10
4.4
10
88
2
52
0
11
2
86
0.67
15900523--15900562
21
2.0
20
90
5
62
0
17
0
82
0.67
15900622--15900664
21
2.0
21
86
8
61
2
20
0
76
0.89
15900794--15900823
15
1.9
16
93
6
53
13
0
0
86
0.57
15900793--15900823
9
3.4
9
90
0
53
12
0
0
87
0.55
15903766--15903858
21
4.2
21
80
11
98
33
3
0
63
1.10
15905274--15905403
63
2.1
62
83
9
158
41
3
8
46
1.52
15905271--15905549
148
1.9
146
79
7
316
39
6
8
45
1.60
15905420--15905629
63
3.3
63
75
5
151
43
7
5
43
1.55
15905688--15905888
63
3.2
60
74
16
185
42
6
6
43
1.58
15905688--15905927
126
1.9
124
81
6
290
42
7
6
43
1.59
15915468--15915502
3
11.7
3
100
0
70
34
0
0
65
0.93
15918036--15918085
25
1.9
27
84
8
68
20
2
42
36
1.63
15918032--15918103
17
4.2
17
73
7
65
16
2
40
40
1.63
15918129--15918204
8
9.5
8
70
5
55
26
0
26
47
1.52
15918681--15918714
4
8.2
4
87
6
50
26
0
0
73
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15918684--15918708
13
1.9
13
100
0
50
24
0
0
76
0.80
15918681--15918714
17
2.0
17
94
0
59
26
0
0
73
0.83
15920050--15920104
28
2.0
28
86
6
78
34
23
23
18
1.96
15920473--15920542
35
2.0
35
81
10
81
47
8
20
24
1.78
15920554--15920644
34
2.6
35
87
3
114
45
12
21
20
1.84
15920554--15920665
35
3.2
34
83
2
125
44
11
22
21
1.84
15920578--15920689
35
3.2
34
82
3
109
46
10
21
21
1.81
15921141--15921274
35
3.9
35
75
12
114
50
11
15
22
1.77
15921149--15921295
70
2.1
69
81
6
163
48
14
17
20
1.81
15921214--15921295
35
2.3
35
72
4
85
46
15
15
21
1.84
15921367--15921408
19
2.2
19
83
12
50
54
4
14
26
1.59
15933518--15933555
17
2.4
17
86
8
53
21
0
0
78
0.74
15951148--15951203
23
2.6
21
78
13
60
26
0
19
53
1.45
15951467--15951499
3
10.7
3
93
6
57
30
3
0
66
1.06
15951627--15951660
15
2.3
15
90
10
52
17
0
0
82
0.67
15951826--15951864
17
2.4
17
87
12
55
25
2
0
71
0.98
15956973--15957008
4
8.8
4
87
6
54
77
2
0
19
0.88
15956977--15957022
16
2.9
16
84
12
60
76
4
0
19
0.96
15956971--15957023
20
2.7
20
83
11
65
77
3
0
18
0.92
15956981--15957023
17
2.5
17
85
11
52
76
4
0
18
0.95
15958306--15958495
51
3.7
53
83
7
180
48
14
7
28
1.72
15958317--15958496
52
3.5
52
83
7
183
48
15
6
28
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15959488--15959527
17
2.3
18
86
4
55
20
2
10
67
1.31
15959472--15959547
11
6.3
12
73
11
57
18
1
11
68
1.27
15960500--15960562
17
3.7
16
75
12
54
9
6
7
76
1.16
15960493--15960539
24
1.9
25
91
4
78
10
10
6
72
1.28
15960671--15960771
21
4.9
21
78
11
102
36
5
6
50
1.54
15960641--15960763
21
5.9
20
73
20
94
35
5
8
50
1.56
15960648--15960771
61
2.0
62
83
10
157
35
5
8
50
1.55
15960757--15960787
14
2.2
14
94
0
53
29
6
9
54
1.57
15962115--15962142
14
2.0
14
100
0
56
28
0
0
71
0.86
15965399--15965435
13
2.8
13
91
0
56
81
5
13
0
0.86
15965402--15965436
12
2.9
12
91
0
52
82
2
14
0
0.77
15966816--15967027
46
4.6
46
76
10
170
37
6
16
40
1.74
15966872--15967027
45
3.4
44
81
7
161
37
6
16
39
1.75
15966912--15967029
22
5.2
22
68
6
83
37
5
16
39
1.74
15967267--15967497
17
13.4
17
71
6
81
40
11
9
38
1.74
15967284--15967375
35
2.6
34
81
5
94
40
10
8
40
1.71
15967431--15967476
18
2.6
18
92
0
74
47
6
8
36
1.60
15969758--15969787
15
2.0
15
93
0
51
30
6
23
40
1.80
15969809--15969846
18
2.1
18
90
0
58
31
15
23
28
1.96
15969806--15969852
24
2.0
24
82
0
58
36
14
21
27
1.93
15972393--15972494
42
2.4
44
87
8
149
19
25
3
50
1.64
15973746--15973874
42
3.1
42
83
0
159
54
14
8
22
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15975304--15975398
40
2.3
41
84
8
122
32
6
8
52
1.57
15975304--15975398
21
4.7
20
81
11
104
32
6
8
52
1.57
15975421--15975459
17
2.2
18
86
13
55
61
7
2
28
1.37
15975616--15975655
16
2.5
17
80
19
50
47
0
0
52
1.00
15978460--15978526
21
3.1
21
80
6
73
79
13
2
4
1.01
15978653--15978721
31
2.2
31
82
7
77
21
13
21
43
1.86
15978664--15978722
31
1.9
31
86
6
84
18
11
22
47
1.81
15979312--15979436
60
2.1
60
92
1
207
47
6
10
36
1.64
15983072--15983110
12
3.3
12
82
17
55
66
0
20
12
1.24
15983368--15983437
12
5.9
12
74
14
65
80
0
17
2
0.84
15983364--15983437
9
8.1
9
79
8
69
79
0
17
2
0.84
15983371--15983437
24
2.9
23
73
8
73
80
0
16
2
0.83
15983364--15983453
9
10.1
9
71
23
57
76
0
18
4
0.95
15983646--15983679
15
2.2
16
94
5
61
26
8
11
52
1.67
15984571--15984704
25
5.5
25
82
7
177
37
11
14
36
1.82
15984575--15984725
46
3.2
47
84
9
175
37
11
13
37
1.81
15984862--15984915
21
2.4
23
81
6
58
44
11
11
33
1.75
15985105--15985291
42
4.5
42
82
4
195
27
12
18
41
1.87
15985218--15985309
40
2.3
40
88
1
139
26
17
16
40
1.90
15986910--15987103
60
3.3
57
83
9
248
47
6
10
35
1.64
15986933--15987103
58
2.9
59
86
3
247
46
6
11
36
1.65
15997211--15997262
15
3.5
15
80
17
63
75
1
0
23
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15997211--15997258
16
3.3
15
86
13
57
75
2
0
22
0.91
15997669--15997714
19
2.4
19
74
0
56
63
15
0
21
1.31
15999035--15999079
22
2.1
21
84
8
56
60
4
0
35
1.17
16002173--16002240
36
2.0
34
83
11
86
42
7
19
30
1.78
16009428--16009459
16
2.1
15
94
5
55
59
0
0
40
0.97
16013449--16013656
102
2.0
100
86
9
287
40
20
18
20
1.91
16019889--16019940
13
3.9
14
76
14
56
48
5
1
44
1.38
16022344--16022403
20
2.9
21
69
16
52
40
1
3
55
1.27
16024948--16024980
15
2.3
15
90
10
52
66
0
15
18
1.25
16025011--16025057
22
2.1
22
88
0
67
51
2
8
38
1.45
16026034--16026279
10
25.2
10
70
18
119
57
5
2
34
1.33
16026034--16026279
20
12.6
19
71
16
139
57
5
2
34
1.33
16026042--16026328
10
30.0
9
69
16
107
56
5
2
35
1.35
16026080--16026186
49
2.2
47
81
8
126
57
3
1
36
1.27
16026221--16026289
28
2.5
26
80
13
75
59
5
2
31
1.36
16026063--16026319
9
26.8
9
70
16
99
55
5
2
36
1.35
16026689--16026733
21
2.1
21
83
0
54
22
4
4
68
1.25
16026780--16026818
20
2.0
19
85
5
51
35
5
2
56
1.35
16026851--16027475
10
62.5
10
63
19
89
36
2
6
55
1.37
16026919--16026964
21
2.3
21
85
14
62
23
2
8
65
1.32
16027110--16027191
19
4.4
19
83
6
80
37
2
6
53
1.39
16027151--16027199
19
2.5
19
90
3
71
46
2
4
46
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16027228--16027285
27
2.1
27
100
0
116
31
0
6
62
1.22
16043581--16043720
8
16.7
9
72
22
92
35
2
2
59
1.27
16043581--16043720
3
50.0
3
72
23
92
35
2
2
59
1.27
16043626--16043718
5
17.2
5
83
10
105
36
2
2
59
1.22
16043629--16043706
26
2.9
26
92
7
122
37
2
2
57
1.26
16043621--16043712
31
2.8
32
87
9
125
36
3
2
57
1.27
16044609--16044706
23
4.2
23
70
12
67
15
2
8
74
1.14
16044621--16044674
28
1.9
28
81
7
65
18
1
7
72
1.17
16044654--16044692
16
2.4
16
91
0
60
15
2
5
76
1.06
16048521--16048562
18
2.4
17
88
4
57
83
7
9
0
0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130