genome.fa.s556.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  22  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5805583--5805622	13	3.2	12	86	13	55	55	0	7	37	1.29
5811421--5811528	30	3.6	29	78	8	101	36	25	5	33	1.79
5811447--5811551	30	3.5	30	77	5	104	37	22	6	33	1.81
5814826--5814869	18	2.4	18	80	3	52	40	11	2	45	1.53
5817959--5818408	57	7.7	57	88	6	638	35	12	6	45	1.67
5817959--5818408	174	2.6	173	90	5	692	35	12	6	45	1.67
5818421--5818462	22	1.9	22	85	9	59	71	2	11	14	1.24
5818444--5818511	15	4.4	15	75	12	66	77	1	7	13	1.03
5818447--5818502	10	5.5	10	76	18	53	76	1	7	14	1.07
5818444--5818545	9	10.6	9	69	16	62	76	1	4	16	1.05
5823741--5823765	1	25.0	1	100	0	50	100	0	0	0	0.00
5833104--5833155	10	5.0	10	81	4	59	57	9	0	32	1.31
5834569--5834619	20	2.5	20	80	3	57	33	3	3	58	1.35
5836516--5836553	20	1.9	20	94	0	67	39	2	10	47	1.52
5836589--5836613	2	12.5	2	100	0	50	0	0	48	52	1.00
5836504--5836605	31	3.3	31	78	5	125	27	0	22	49	1.57
5843326--5843353	7	4.0	7	100	0	56	14	0	0	85	0.59
5844923--5845151	125	1.8	125	80	2	280	42	10	2	44	1.51
5845107--5845456	134	2.6	133	76	6	300	37	16	4	41	1.69
5845898--5846052	60	2.5	60	80	12	149	41	16	1	41	1.56
5846189--5846248	16	3.6	16	71	10	50	51	1	1	45	1.21
5846165--5846443	130	2.2	128	80	2	308	43	11	5	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5846229--5846466	128	1.8	130	82	1	309	40	12	5	41	1.67
5851543--5851711	88	1.9	88	83	4	216	37	11	21	28	1.89
5854039--5854074	18	2.0	18	94	0	63	25	33	13	27	1.94
5863788--5863813	11	2.4	11	100	0	52	50	19	15	15	1.79
5869360--5869410	21	2.7	18	81	18	68	50	0	0	49	1.00
5869363--5869407	21	2.2	21	92	7	76	48	0	0	51	1.00
5873616--5873710	20	4.3	23	72	18	62	72	2	5	20	1.14
5873614--5873658	19	2.4	19	85	7	56	68	2	6	22	1.24
5873613--5873716	11	9.5	10	72	20	68	72	2	4	20	1.16
5873667--5873723	30	1.9	30	89	7	89	77	3	5	14	1.08
5877628--5877678	2	25.5	2	87	0	66	45	1	5	47	1.38
5882225--5882265	22	1.9	21	90	5	64	48	2	0	48	1.14
5886748--5886777	12	2.5	12	100	0	60	43	6	0	50	1.28
5887884--5887908	8	3.1	8	100	0	50	88	0	0	12	0.53
5894826--5894922	47	2.0	48	86	5	135	52	9	10	27	1.66
5898274--5898320	19	2.5	19	78	0	58	8	8	4	78	1.07
5898640--5898716	34	2.3	34	86	0	100	41	7	12	37	1.73
5900130--5901038	321	2.8	320	82	5	975	43	14	9	32	1.78
5900109--5901040	161	5.8	160	80	5	863	42	14	9	32	1.78
5904455--5904510	20	2.7	21	83	8	71	35	23	8	32	1.86
5906650--5906687	17	2.2	17	86	9	51	39	0	31	28	1.57
5907085--5907239	62	2.5	61	80	7	186	34	15	9	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5908275--5908347	28	2.6	28	93	0	128	24	2	24	47	1.65
5908275--5908370	28	3.4	28	88	2	113	27	3	21	47	1.65
5908367--5908418	25	2.1	25	85	0	68	26	3	23	46	1.69
5911580--5911649	35	2.0	35	86	5	97	40	14	8	37	1.76
5914089--5914140	24	2.2	24	92	0	86	38	7	0	53	1.30
5916143--5916185	21	2.0	21	86	13	61	65	2	0	32	1.06
5916145--5916192	21	2.2	22	82	14	55	64	2	0	33	1.05
5916440--5916477	2	19.5	2	86	5	51	44	0	2	52	1.14
5922249--5922753	63	8.1	62	70	7	187	47	7	8	36	1.62
5922355--5922756	63	6.4	63	70	5	220	46	7	8	37	1.65
5922336--5922756	126	3.3	126	84	2	531	46	7	9	36	1.65
5924116--5924161	18	2.7	17	80	9	58	80	8	0	10	0.91
5925276--5925322	20	2.3	20	82	7	60	74	0	8	17	1.05
5925276--5925322	19	2.4	20	82	3	60	74	0	8	17	1.05
5925330--5925378	3	16.0	3	95	4	89	65	0	0	34	0.93
5926188--5926240	26	2.0	27	81	3	63	49	7	0	43	1.31
5931244--5931298	23	2.5	22	77	11	58	78	9	9	3	1.08
5932146--5932194	12	4.1	12	84	10	64	79	2	10	8	1.01
5932805--5932888	31	2.7	31	76	9	82	34	17	15	32	1.92
5936271--5936295	13	1.9	13	100	0	50	48	24	12	16	1.79
5940326--5940350	2	12.5	2	100	0	50	52	0	0	48	1.00
5940407--5940459	27	1.9	28	88	3	81	47	11	3	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5940434--5940478	24	1.9	24	86	4	65	46	11	4	37	1.60
5944775--5944815	18	2.4	18	88	8	59	31	2	0	65	1.05
5944773--5944815	17	2.5	17	82	10	52	34	2	0	62	1.08
5947730--5947782	16	3.3	17	76	12	58	58	1	0	39	1.09
5957678--5957721	20	2.3	19	81	14	54	65	0	0	34	0.93
5957975--5958008	2	17.0	2	100	0	68	50	0	0	50	1.00
5963806--5963833	14	2.0	14	100	0	56	57	7	0	35	1.26
5964349--5964428	31	2.7	31	82	5	103	33	20	2	43	1.65
5965104--5965149	25	2.0	22	87	12	65	65	0	4	30	1.12
5971143--5972475	333	4.0	333	87	1	1798	40	15	11	32	1.83
5973345--5973387	21	2.0	23	86	9	63	60	0	0	39	0.97
5978262--5978308	22	2.1	22	92	0	76	70	10	0	19	1.16
6000511--6000693	90	2.0	90	100	0	366	27	19	15	37	1.92
6000997--6001164	87	1.9	88	87	1	248	39	16	9	34	1.81
6001447--6002342	162	5.5	162	77	6	778	45	13	7	34	1.71
6001191--6002342	324	3.6	320	82	2	1231	44	12	7	34	1.72
6002923--6003025	52	2.0	50	85	7	136	48	5	17	28	1.70
6004558--6004605	23	2.1	22	92	3	78	41	0	0	58	0.98
6034963--6035013	24	2.1	24	88	0	75	35	19	17	27	1.94
6036889--6036914	2	13.0	2	100	0	52	50	0	0	50	1.00
6037999--6038058	20	3.3	18	76	13	52	46	0	0	53	1.00
6038012--6038051	20	2.0	20	85	0	53	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6041134--6041186	23	2.3	23	93	6	90	18	37	9	33	1.83
6044006--6044031	12	2.2	12	100	0	52	84	0	0	15	0.62
6045567--6045633	26	2.7	24	78	17	82	47	0	2	49	1.16
6045602--6045681	15	5.0	15	70	16	54	51	0	1	47	1.08
6045612--6045697	19	4.9	18	76	17	67	52	0	1	46	1.08
6045726--6045832	23	4.8	22	74	21	98	40	0	1	57	1.16
6045726--6045822	40	2.6	36	80	13	115	40	1	2	56	1.18
6045765--6045832	12	5.5	12	72	18	59	39	0	1	58	1.07
6045767--6045846	27	3.2	26	73	18	71	38	0	2	58	1.11
6045784--6045850	29	2.4	27	82	7	80	38	0	2	58	1.14
6045819--6045867	22	2.2	22	88	0	71	40	2	2	55	1.23
6050890--6050984	12	7.9	12	80	4	102	0	32	0	67	0.91
6050893--6050964	15	4.5	15	72	14	56	0	34	0	65	0.93
6050893--6050984	24	3.8	24	86	0	121	0	33	0	66	0.92
6050893--6050984	48	1.9	48	90	0	148	0	33	0	66	0.92
6052095--6052143	19	2.5	19	78	15	55	24	0	4	71	1.03
6057367--6057411	18	2.5	18	81	0	54	46	0	0	53	1.00
6057647--6057681	11	3.1	12	92	8	56	0	8	5	85	0.73
6066457--6066483	2	13.5	2	100	0	54	48	0	51	0	1.00
6066490--6066527	19	2.0	19	100	0	76	42	31	10	15	1.81
6072548--6072576	15	1.9	15	100	0	58	44	0	0	55	0.99
6073825--6073857	17	1.9	17	93	0	57	12	12	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6074929--6074962	13	2.5	13	95	4	59	70	8	14	5	1.31
6077711--6078778	233	4.5	233	82	6	1224	33	8	10	47	1.69
6082973--6083743	201	3.8	199	78	6	745	34	11	11	42	1.78
6085473--6085507	7	5.1	7	86	6	54	11	0	42	45	1.40
6085480--6085504	13	1.9	13	100	0	50	8	0	40	52	1.31
6085533--6085574	22	1.9	22	90	0	66	19	2	28	50	1.60
6085594--6085659	19	3.6	18	79	6	78	18	0	34	46	1.49
6087532--6087956	143	3.0	143	77	9	418	41	11	12	34	1.79
6087456--6087963	144	3.5	144	76	5	474	41	11	12	35	1.78
6089732--6089822	45	2.0	46	93	2	157	28	19	12	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130