genome.fa.s556.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  5  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1216706--1216756	19	2.9	17	76	18	52	68	0	3	27	1.07
1216916--1216965	21	2.3	23	77	19	63	60	0	0	40	0.97
1217685--1217733	3	16.3	3	100	0	98	32	0	0	67	0.91
1219875--1220011	69	2.0	69	84	2	177	37	6	10	45	1.64
1220115--1220157	21	2.0	22	90	4	70	34	9	9	46	1.68
1221350--1221382	7	4.7	7	92	0	57	84	3	12	0	0.72
1221698--1221757	30	2.0	30	86	0	84	51	5	6	36	1.50
1222317--1222534	108	2.0	108	98	0	418	33	19	12	33	1.90
1223923--1223973	22	2.2	23	83	13	61	27	0	7	64	1.21
1224184--1224228	20	2.2	21	84	11	58	46	0	4	48	1.22
1227230--1227288	29	2.0	29	93	0	100	28	18	20	32	1.96
1233811--1233849	20	1.9	20	89	5	60	64	5	0	30	1.15
1237642--1237677	18	1.9	19	88	5	56	58	13	22	5	1.56
1239366--1239515	52	2.9	50	81	8	151	44	8	20	28	1.79
1243593--1243636	20	2.2	20	84	12	54	38	0	4	56	1.20
1243814--1243861	26	1.9	24	83	8	60	66	4	4	25	1.27
1243892--1243930	3	13.0	3	100	0	78	66	0	0	33	0.92
1245016--1245070	24	2.3	24	87	6	85	21	10	5	61	1.49
1245861--1245903	16	2.4	18	81	14	54	9	9	2	79	1.03
1246187--1246233	13	3.8	12	80	8	51	2	14	0	82	0.75
1246200--1246244	18	2.5	18	83	16	58	0	15	2	82	0.77
1249009--1249033	12	2.1	12	100	0	50	28	24	0	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250844--1250890	2	23.5	2	91	0	67	51	42	0	6	1.27
1251520--1251577	29	1.9	31	83	13	77	53	0	0	46	1.00
1251759--1251816	19	2.9	19	84	7	62	68	1	1	27	1.08
1252313--1252353	22	1.9	21	85	5	55	56	0	2	41	1.13
1254305--1254347	21	2.0	22	86	4	61	62	4	2	30	1.28
1254403--1254435	15	2.2	15	89	10	50	60	0	0	39	0.97
1262066--1262105	19	2.0	22	85	14	59	42	0	5	52	1.23
1262999--1263087	47	1.9	47	95	2	162	41	2	13	42	1.56
1263114--1263141	2	14.0	2	100	0	56	50	0	0	50	1.00
1264767--1264816	16	3.4	16	68	21	54	56	16	10	18	1.67
1264729--1264828	28	3.7	28	83	10	129	51	16	11	22	1.75
1264783--1264840	12	4.5	12	72	16	53	55	17	6	20	1.65
1275849--1276037	96	2.0	96	94	0	333	32	13	14	39	1.84
1299898--1299956	28	2.1	28	96	0	109	15	15	20	49	1.80
1317802--1317853	25	2.1	25	82	7	61	44	1	5	48	1.38
1318095--1318135	21	2.0	21	90	0	64	46	14	9	29	1.77
1318131--1318184	21	2.5	21	81	3	63	51	11	5	31	1.60
1318349--1318383	17	2.0	17	88	5	52	82	11	0	5	0.82
1319366--1319403	20	1.9	20	89	10	60	36	2	18	42	1.64
1319521--1319594	35	2.1	36	82	2	87	29	16	17	36	1.92
1319481--1319645	17	9.5	17	68	7	89	36	13	15	34	1.87
1319624--1319709	17	5.0	17	74	2	55	38	15	15	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1319530--1319687	52	3.0	51	81	3	156	36	15	15	32	1.89
1319724--1319762	17	2.3	17	86	0	51	51	7	20	20	1.72
1319774--1319848	17	4.4	17	79	1	78	38	12	13	36	1.82
1319810--1320043	81	2.9	81	83	1	290	41	13	11	33	1.81
1319946--1319976	16	1.9	16	93	0	53	41	22	16	19	1.89
1320105--1320165	17	3.6	17	76	8	70	36	13	14	36	1.85
1320220--1320277	27	2.1	27	81	6	64	39	8	13	37	1.76
1320595--1320666	24	3.2	22	77	9	74	52	13	2	30	1.55
1320564--1320673	22	5.0	21	72	14	78	49	15	4	30	1.65
1320564--1320808	91	2.7	88	76	9	235	47	14	6	32	1.68
1320564--1320800	45	5.3	45	76	9	164	47	14	5	32	1.68
1320730--1320800	22	3.2	22	69	11	63	47	18	7	26	1.74
1320591--1320809	45	4.8	45	75	8	178	47	13	5	32	1.66
1321009--1321065	23	2.5	23	83	13	73	40	17	10	31	1.84
1325797--1325846	21	2.3	22	86	3	75	56	6	2	36	1.36
1325880--1325934	24	2.2	25	84	9	69	52	9	3	34	1.50
1332115--1332140	4	6.5	4	100	0	52	76	0	0	23	0.78
1332464--1332513	26	1.9	26	91	0	82	40	2	2	56	1.22
1339446--1339478	2	16.5	2	100	0	66	51	0	48	0	1.00
1341273--1341304	15	2.1	15	94	0	55	12	3	0	84	0.74
1341438--1341493	26	2.3	24	82	11	71	48	0	0	51	1.00
1357752--1357786	14	2.3	16	90	9	56	68	0	14	17	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1359115--1359139	13	1.9	13	100	0	50	56	36	0	8	1.29
1359468--1359507	20	2.0	20	90	4	64	47	10	30	12	1.74
1360491--1360543	24	2.3	22	78	12	54	47	0	0	52	1.00
1360670--1360827	74	2.2	72	91	2	253	32	21	20	24	1.97
1362976--1363059	42	2.0	42	88	0	123	30	20	15	33	1.94
1367134--1367208	39	1.9	39	88	0	114	28	25	6	40	1.81
1368823--1368866	20	2.2	20	83	4	52	40	0	4	54	1.21
1379503--1379556	24	2.3	23	87	6	81	18	9	20	51	1.73
1394629--1394677	11	4.2	12	73	21	50	69	2	0	28	1.00
1403846--1403895	9	5.2	10	80	9	52	58	0	0	42	0.98
1403869--1403896	3	9.3	3	100	0	56	67	0	0	32	0.91
1403895--1403920	3	8.7	3	100	0	52	69	0	30	0	0.89
1406443--1406603	87	1.9	87	82	2	207	37	11	26	24	1.89
1406533--1406926	102	3.9	102	90	0	547	36	11	29	22	1.89
1410296--1410320	6	4.2	6	100	0	50	16	16	52	16	1.76
1414445--1414478	16	2.1	16	100	0	68	14	29	5	50	1.67
1417442--1417483	21	2.0	21	81	9	50	71	9	0	19	1.13
1429021--1429054	17	1.9	18	88	5	52	44	5	8	41	1.60
1429439--1429543	30	3.5	30	85	0	120	38	12	2	46	1.56
1429588--1429639	26	2.0	26	85	10	72	53	3	9	32	1.51
1430750--1430789	18	2.1	20	86	9	57	32	0	0	67	0.91
1430893--1430953	25	2.5	24	82	12	70	55	4	0	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431374--1431690	159	2.0	159	84	6	419	37	5	10	46	1.62
1439522--1439565	18	2.4	18	88	3	70	31	9	11	47	1.71
1449650--1449706	21	2.6	23	78	13	66	57	1	0	40	1.09
1455578--1455602	13	1.9	13	100	0	50	0	36	0	64	0.94
1462884--1462946	32	2.0	32	96	0	117	41	7	7	42	1.63
1465696--1465759	29	2.2	29	80	5	76	59	1	12	26	1.42
1469562--1469954	196	2.0	196	92	1	653	40	13	21	24	1.90
1478153--1478179	1	27.0	1	100	0	54	100	0	0	0	0.00
1478396--1478449	22	2.5	22	79	5	67	55	3	3	37	1.35
1478695--1478736	22	2.0	22	81	13	52	45	0	4	50	1.23
1479821--1479931	46	2.4	47	75	1	116	39	8	8	44	1.64
1479821--1479966	47	3.1	46	75	8	118	39	8	6	45	1.62
1482698--1482766	31	2.2	31	85	10	88	44	1	4	49	1.31
1487150--1487183	2	17.0	2	100	0	68	50	0	0	50	1.00
1488769--1488810	19	2.3	19	79	4	50	52	2	7	38	1.42
1490517--1490551	2	17.5	2	100	0	70	0	51	0	48	1.00
1497176--1497207	2	16.0	2	100	0	64	50	0	0	50	1.00
1510378--1510438	32	1.9	32	86	6	88	32	4	0	62	1.17
1511477--1511521	10	4.2	10	84	15	63	44	0	0	55	0.99
1511491--1511536	20	2.3	20	85	7	58	39	0	0	60	0.97
1512759--1512817	16	3.6	16	77	9	57	64	0	0	35	0.94
1515037--1515087	14	3.6	14	76	12	52	47	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515593--1515632	21	2.0	20	85	5	53	50	0	10	40	1.36
1519164--1519206	18	2.4	18	92	0	68	32	2	0	65	1.06
1522109--1522240	45	3.0	44	89	3	194	29	17	26	26	1.97
1525514--1525640	68	1.9	67	83	4	166	17	18	12	51	1.75
1542885--1542966	43	1.9	43	85	5	112	20	9	14	54	1.68
1558232--1558256	12	2.1	12	100	0	50	44	24	8	24	1.80
1561437--1561471	18	1.9	18	88	11	54	31	8	25	34	1.86
1565935--1565987	22	2.4	22	77	3	52	33	15	5	45	1.69
1565967--1566011	21	2.3	19	88	7	63	37	6	2	53	1.40
1566094--1566185	44	2.1	44	81	4	105	40	6	3	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130