genome.fa.s556.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  64  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13425187--13425461	41	6.8	41	82	6	319	29	7	11	52	1.65
13425440--13425542	32	3.1	32	77	7	98	32	2	7	57	1.42
13425510--13425576	19	3.4	20	71	20	61	31	4	8	55	1.51
13429264--13429319	23	2.6	20	78	15	67	35	3	1	58	1.26
13429264--13429329	23	3.0	20	78	22	62	33	3	4	59	1.33
13431316--13432889	784	2.0	784	99	0	3094	38	14	10	36	1.81
13435552--13435758	80	2.6	79	87	3	288	40	27	10	22	1.86
13435666--13435719	28	1.9	28	84	0	72	44	24	9	22	1.81
13435678--13435776	52	1.9	52	85	4	137	40	28	11	20	1.86
13445882--13445951	33	2.1	33	82	10	81	35	18	11	34	1.87
13445823--13446273	134	3.4	133	78	3	424	39	18	12	29	1.87
13447400--13447433	17	1.9	17	88	5	50	50	11	0	38	1.39
13450547--13450594	2	24.5	2	91	4	80	52	45	0	2	1.12
13461935--13461965	1	31.0	1	100	0	62	100	0	0	0	0.00
13462677--13462712	10	3.7	10	88	3	56	41	0	0	58	0.98
13463484--13463520	15	2.3	17	81	13	51	37	0	0	62	0.96
13465079--13465118	21	1.9	21	84	0	53	50	32	5	12	1.62
13468896--13468938	20	2.2	20	87	8	61	23	0	2	74	0.93
13469275--13469344	28	2.4	29	85	2	97	48	41	0	10	1.36
13469362--13469406	14	3.1	14	84	6	54	48	28	2	20	1.61
13469449--13469478	13	2.2	14	94	5	53	50	40	0	10	1.36
13469527--13469570	15	2.9	15	75	0	52	52	31	0	15	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13469429--13469574	38	3.9	35	71	13	112	50	28	1	19	1.57
13469563--13469587	12	2.1	12	100	0	50	56	24	0	20	1.43
13473585--13473668	41	2.0	41	97	0	159	42	16	5	34	1.73
13473870--13473921	22	2.4	22	86	0	68	30	19	9	40	1.83
13473881--13473928	22	2.2	22	92	0	78	22	16	14	45	1.84
13478219--13478251	15	2.1	16	88	11	50	42	0	6	51	1.26
13479847--13480215	176	2.1	177	97	1	697	31	14	29	24	1.94
13480444--13480478	17	2.1	16	94	5	61	14	0	5	80	0.89
13480469--13480501	16	2.2	15	89	10	50	24	0	6	69	1.10
13486347--13486417	23	3.1	23	76	13	76	42	4	8	45	1.54
13486583--13486825	42	5.7	42	70	15	140	32	8	13	45	1.74
13486899--13487013	22	5.2	23	70	20	84	39	8	12	40	1.73
13487137--13487193	21	2.5	23	86	8	73	31	8	17	42	1.80
13487276--13487321	24	2.0	24	82	4	58	32	13	13	41	1.82
13487411--13487513	21	4.5	22	69	24	72	38	7	13	39	1.74
13487628--13487689	19	3.2	19	77	11	56	29	9	11	50	1.70
13487678--13487741	19	3.4	18	83	10	83	25	6	17	51	1.68
13487633--13487741	38	2.8	38	76	16	93	28	9	15	46	1.76
13488039--13488108	28	2.5	28	85	0	95	8	12	7	71	1.30
13488057--13488106	14	3.6	14	81	10	66	10	8	6	76	1.17
13488342--13488367	5	5.2	5	100	0	52	80	0	0	19	0.71
13491446--13491826	203	1.9	203	92	4	653	38	12	12	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13492148--13492281	14	9.6	13	67	21	60	73	4	2	18	1.13
13492149--13492262	47	2.4	47	81	4	124	71	5	2	20	1.17
13493130--13493211	3	27.3	3	80	9	96	63	2	2	31	1.20
13495045--13495095	24	2.0	24	85	7	66	39	0	3	56	1.18
13495158--13495199	22	1.9	22	85	0	57	30	2	2	64	1.19
13496044--13496073	14	2.1	14	93	0	51	16	0	0	83	0.65
13498924--13498996	35	2.1	35	97	0	137	43	10	12	32	1.77
13504794--13504859	31	2.2	31	81	10	75	37	0	1	60	1.06
13504802--13504860	17	3.7	16	80	15	68	38	0	0	61	0.96
13504807--13504863	29	2.0	29	83	13	73	40	0	0	59	0.97
13506054--13506086	15	2.2	15	89	10	50	27	3	0	69	1.03
13515230--13515287	2	29.5	2	96	3	109	50	0	50	0	1.00
13515448--13515530	4	21.0	4	78	7	62	44	3	8	43	1.52
13515448--13515502	24	2.3	24	93	0	92	45	5	5	43	1.50
13521828--13521853	3	8.7	3	100	0	52	0	0	30	69	0.89
13530528--13530588	19	3.0	21	79	18	58	52	0	0	47	1.00
13531894--13531979	43	2.0	43	95	0	154	22	12	29	36	1.91
13533361--13533447	43	2.0	43	95	0	156	56	3	34	5	1.40
13540099--13540129	16	1.9	16	93	0	53	32	0	0	67	0.91
13548682--13548721	20	2.0	21	85	5	55	25	0	2	72	0.97
13548681--13548743	16	4.0	16	75	4	65	25	0	4	69	1.07
13551758--13551795	2	19.0	2	88	0	58	50	5	0	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13551758--13551795	10	3.8	10	96	0	67	50	5	0	44	1.24
13553750--13553783	17	2.0	17	88	0	50	47	0	0	52	1.00
13556086--13556110	13	1.9	13	100	0	50	68	0	0	32	0.90
13557400--13557427	2	14.0	2	100	0	56	50	0	0	50	1.00
13557904--13557940	19	1.9	19	89	10	58	27	5	5	62	1.39
13564107--13564384	139	2.0	138	90	0	430	26	20	32	20	1.97
13566702--13566738	18	2.1	18	89	0	56	37	0	2	59	1.12
13570373--13570429	12	4.9	11	77	12	60	50	3	0	45	1.18
13570373--13570443	25	3.0	25	85	8	87	49	4	1	45	1.30
13570373--13570446	24	3.1	24	84	9	91	51	4	1	43	1.29
13570453--13570499	16	3.0	15	77	20	51	74	2	2	21	1.03
13570451--13570506	20	2.7	22	78	8	55	71	1	3	23	1.11
13576621--13576725	6	17.5	6	81	3	113	47	5	1	44	1.37
13576621--13576725	10	10.5	10	82	4	113	47	5	1	44	1.37
13584724--13584794	36	2.0	36	88	0	106	25	14	21	39	1.90
13585099--13585387	41	7.2	41	72	12	199	31	13	14	40	1.84
13585092--13585260	81	2.1	81	86	1	232	31	12	13	42	1.82
13585120--13585387	81	3.4	77	78	11	233	32	13	14	39	1.85
13585362--13585537	43	4.1	41	76	11	167	34	11	13	40	1.81
13585339--13585514	85	2.1	85	84	2	228	34	12	11	41	1.79
13587427--13587527	53	1.9	53	81	0	121	47	11	6	33	1.67
13587925--13587963	20	2.0	20	84	0	51	41	7	2	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13590845--13591216	200	1.9	200	80	5	439	32	10	8	48	1.67
13593406--13593446	19	2.2	19	100	0	82	21	43	9	24	1.83
13594369--13594414	10	4.8	10	81	7	51	28	0	4	67	1.10
13594540--13594573	17	2.0	17	88	0	50	76	2	0	20	0.92
13599070--13599103	16	2.1	16	100	0	68	5	5	17	70	1.28
13607503--13607640	51	2.7	51	79	2	143	31	11	17	39	1.85
13609239--13609263	8	3.1	8	100	0	50	24	0	0	76	0.80
13609419--13609457	9	4.3	9	81	12	53	74	2	0	23	0.94
13615156--13615199	15	2.9	15	86	3	52	4	20	0	75	0.98
13619811--13619837	2	13.5	2	100	0	54	51	0	0	48	1.00
13623043--13623196	81	1.9	79	81	9	186	27	18	1	51	1.56
13623766--13623792	2	13.5	2	100	0	54	48	0	0	51	1.00
13623738--13623845	53	2.0	53	100	0	216	39	7	1	50	1.41
13623819--13623852	2	17.0	2	100	0	68	50	0	0	50	1.00
13633964--13634003	20	2.1	19	90	4	62	72	2	0	25	0.97
13641077--13641120	19	2.5	17	82	10	54	43	2	0	54	1.12
13644953--13645226	40	6.8	40	71	11	128	39	9	12	37	1.76
13644984--13645120	41	3.4	41	81	7	129	43	11	8	36	1.72
13646765--13647399	60	10.7	57	82	10	715	34	12	7	45	1.71
13647037--13647400	115	3.2	115	88	6	526	33	12	7	46	1.69
13647423--13647510	12	7.6	11	74	12	61	77	2	5	14	1.05
13647415--13647499	29	2.9	28	80	5	89	76	2	7	14	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13647417--13647524	34	3.2	32	75	12	83	75	1	5	17	1.09
13647434--13647510	6	12.5	6	72	15	59	77	1	6	14	1.02
13647416--13647513	11	8.6	11	75	13	74	76	2	6	15	1.07
13647416--13647510	17	5.5	17	72	17	72	76	2	6	14	1.07
13648364--13648409	19	2.5	19	89	10	69	78	8	4	8	1.09
13648359--13648421	22	2.9	23	65	30	57	79	7	4	7	1.05
13648424--13648493	19	3.6	19	75	17	63	71	1	2	24	1.08
13648464--13648493	3	9.7	3	92	7	51	70	0	0	30	0.88
13648457--13648627	4	44.2	4	69	15	53	69	4	1	25	1.16
13648599--13648657	5	11.2	5	79	16	50	79	1	0	18	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130