genome.fa.s556.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  80  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16048522--16048570	16	3.1	15	78	18	55	83	4	12	0	0.77
16050011--16050044	17	2.0	17	88	0	50	20	17	11	50	1.77
16050732--16050946	114	1.9	114	83	0	277	23	22	14	38	1.92
16050723--16050999	114	2.4	114	78	1	268	22	24	14	38	1.92
16051501--16051620	3	44.0	3	74	21	86	34	2	3	60	1.27
16051488--16051579	13	7.7	12	75	21	70	38	5	2	54	1.36
16051523--16051579	10	6.1	10	89	8	77	38	5	0	56	1.22
16051488--16051582	31	3.1	31	83	7	106	37	5	2	54	1.35
16051504--16051620	23	5.3	22	74	18	100	34	2	3	59	1.27
16052487--16052575	24	3.7	24	75	11	85	19	0	6	74	1.04
16057729--16057773	3	15.0	3	100	0	90	66	0	0	33	0.92
16058940--16059002	30	2.1	31	82	8	76	22	0	34	42	1.54
16058945--16059139	16	12.8	15	66	20	68	22	1	30	46	1.58
16059046--16059140	16	6.0	16	79	6	104	18	1	31	48	1.56
16059477--16059519	21	2.0	23	90	9	72	58	13	0	27	1.37
16066135--16066171	19	2.0	18	94	5	65	45	0	0	54	1.00
16066619--16066643	13	1.9	13	100	0	50	40	0	0	60	0.97
16067840--16067864	2	12.5	2	100	0	50	52	0	0	48	1.00
16069277--16069324	23	2.1	22	88	11	71	64	0	0	35	0.94
16074748--16074943	109	1.8	106	87	3	293	22	17	14	45	1.84
16075392--16075435	6	7.2	6	79	5	52	47	0	0	52	1.00
16075388--16075455	22	2.9	25	78	14	90	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16080767--16080885	58	2.1	58	100	0	238	37	21	12	27	1.90
16095855--16095948	47	2.0	47	97	0	179	24	21	26	27	1.99
16097087--16097111	2	12.5	2	100	0	50	48	0	0	52	1.00
16099836--16099879	17	2.6	17	89	3	63	79	0	4	15	0.89
16103812--16103863	22	2.4	22	93	0	86	28	17	17	36	1.92
16103883--16103964	22	3.7	22	88	0	119	37	21	9	30	1.86
16103813--16103969	44	3.6	44	78	4	147	33	21	13	31	1.92
16104406--16104559	38	4.0	38	81	5	150	24	13	18	44	1.85
16104406--16104559	77	2.0	77	82	8	190	24	13	18	44	1.85
16104701--16104846	21	6.8	21	73	10	98	34	9	15	41	1.79
16104701--16104911	43	4.9	43	78	10	198	34	9	15	40	1.80
16104700--16104911	86	2.5	86	84	10	272	34	9	15	40	1.80
16104872--16104943	32	2.3	31	85	2	90	33	9	13	43	1.77
16104925--16104983	22	2.8	21	86	2	73	38	10	10	40	1.73
16104952--16104999	23	2.1	22	84	3	60	43	12	6	37	1.68
16105108--16105239	36	3.7	35	81	4	147	29	13	9	47	1.74
16105098--16105239	53	2.6	53	81	8	171	30	13	8	47	1.72
16105092--16105257	18	9.2	18	78	9	108	30	12	8	48	1.70
16105343--16105457	22	5.4	20	73	19	74	40	8	8	42	1.67
16107078--16107121	22	2.0	22	100	0	88	22	9	18	50	1.75
16115599--16115651	23	2.4	22	84	12	72	49	1	0	49	1.12
16128852--16128908	29	2.0	27	86	6	78	33	1	3	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16128919--16129022	42	2.4	43	75	12	106	48	2	1	47	1.28
16129643--16129694	21	2.5	21	100	0	104	50	0	0	50	1.00
16136054--16136192	60	2.3	62	81	8	169	43	12	2	42	1.54
16142452--16142601	61	2.4	62	84	9	216	42	11	4	42	1.59
16143285--16143378	45	2.1	45	95	0	170	44	12	5	37	1.65
16143378--16143421	23	1.9	23	85	0	61	52	0	4	43	1.22
16143931--16143973	23	1.9	22	85	4	59	58	9	0	32	1.30
16144199--16144228	8	3.6	8	95	4	51	53	0	0	46	1.00
16148028--16148063	17	2.1	18	89	5	56	63	11	8	16	1.49
16148108--16148175	31	2.2	31	81	5	75	47	5	7	39	1.56
16148368--16148418	26	2.0	26	84	7	68	66	0	27	5	1.14
16173662--16173745	29	2.9	30	81	11	79	42	2	0	54	1.13
16174261--16174315	23	2.4	22	78	6	65	36	1	1	60	1.18
16175245--16175277	12	2.9	12	86	13	52	33	0	0	66	0.92
16176395--16176419	5	5.0	5	100	0	50	60	20	20	0	1.37
16185240--16185269	11	2.7	11	89	0	51	46	0	0	53	1.00
16185298--16185423	51	2.4	51	82	5	128	53	5	12	28	1.61
16186333--16186375	11	3.9	11	93	0	77	25	0	27	46	1.53
16186333--16186388	22	2.6	22	85	2	78	25	1	26	46	1.63
16186406--16186555	52	2.9	51	85	4	192	44	6	21	28	1.75
16194234--16194274	12	3.5	12	83	12	50	31	0	0	68	0.90
16195622--16195690	35	2.0	35	85	0	93	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16199917--16199987	17	4.5	17	68	19	55	26	2	4	66	1.24
16204556--16204713	64	2.5	64	81	1	174	46	6	4	42	1.49
16205456--16205489	15	2.2	16	89	5	52	61	0	0	38	0.96
16218186--16218240	27	2.0	27	100	0	110	30	7	25	36	1.83
16220073--16220097	2	12.5	2	100	0	50	0	48	0	52	1.00
16224084--16224151	27	2.4	28	80	9	77	27	1	2	67	1.13
16224211--16224257	23	2.0	24	88	8	71	63	0	0	36	0.94
16233123--16233169	2	23.5	2	100	0	94	0	51	0	48	1.00
16235641--16235688	24	2.0	24	91	0	78	58	0	6	35	1.23
16238977--16239021	19	2.3	20	81	11	58	24	2	11	62	1.40
16238987--16239024	19	2.0	19	94	0	67	21	2	13	63	1.42
16239080--16239120	18	2.3	18	87	4	57	60	7	0	31	1.24
16241066--16241126	18	3.4	17	77	8	59	63	19	1	14	1.38
16241070--16241127	21	2.8	20	79	10	62	62	20	1	15	1.42
16241074--16241126	15	3.3	15	77	17	54	64	18	1	15	1.38
16244450--16244488	20	2.0	19	90	5	60	64	12	5	17	1.46
16246787--16246839	22	2.4	22	90	6	72	50	0	0	49	1.00
16246793--16246839	22	2.2	22	96	3	87	48	0	0	51	1.00
16248448--16248489	17	2.3	19	80	12	52	33	0	2	64	1.07
16248456--16248564	40	2.8	37	76	12	103	48	1	4	44	1.33
16248725--16248794	37	1.9	37	91	8	117	62	2	4	30	1.28
16248732--16248824	21	4.8	20	69	18	79	59	6	2	32	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16248896--16248937	19	2.3	18	80	15	50	66	2	2	28	1.16
16249031--16249069	20	1.9	21	89	5	62	35	5	5	53	1.45
16249082--16249152	30	2.4	29	77	11	81	25	0	15	59	1.37
16249129--16249182	19	2.8	19	78	8	65	27	1	7	62	1.32
16249129--16249171	20	2.2	20	87	4	61	23	0	9	67	1.19
16249141--16249184	20	2.2	20	87	0	61	22	2	9	65	1.32
16249781--16249861	27	2.8	29	80	17	96	49	1	0	49	1.08
16249797--16249835	19	2.0	20	90	5	62	48	0	0	51	1.00
16249996--16250049	21	2.5	22	73	8	58	33	14	3	48	1.62
16252990--16253016	2	13.5	2	100	0	54	0	48	0	51	1.00
16262169--16262215	21	2.2	21	84	0	58	23	14	14	46	1.82
16263930--16264022	26	3.7	26	90	8	149	35	23	7	33	1.83
16264729--16264771	21	2.0	21	86	0	59	46	13	13	25	1.81
16265025--16265068	22	2.0	24	82	13	58	22	2	40	34	1.67
16270834--16270888	27	2.0	27	100	0	110	30	7	25	36	1.83
16272721--16272747	2	13.5	2	100	0	54	0	48	0	51	1.00
16273617--16273665	19	2.7	18	81	12	55	55	2	0	42	1.11
16276733--16276800	27	2.4	28	80	9	77	27	1	2	67	1.13
16276832--16276881	18	2.7	18	81	9	55	60	0	0	40	0.97
16276819--16276902	30	2.9	28	81	12	82	61	0	0	38	0.96
16276847--16276906	22	2.7	22	80	12	68	65	0	0	35	0.93
16276860--16276906	23	2.0	24	88	8	71	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16285790--16285834	2	22.5	2	100	0	90	0	51	0	48	1.00
16286904--16286975	30	2.6	27	81	16	69	47	1	0	51	1.09
16287395--16287442	24	2.0	24	87	0	69	58	0	4	37	1.18
16290737--16290781	19	2.3	20	81	11	58	24	2	11	62	1.40
16290747--16290784	19	2.0	19	94	0	67	21	2	13	63	1.42
16294029--16294066	19	2.0	19	85	10	51	71	0	0	28	0.87
16296626--16296659	17	2.0	17	88	0	50	23	23	11	41	1.87
16300210--16300252	17	2.4	19	88	7	63	37	0	2	60	1.10
16300348--16300391	20	2.2	20	84	8	54	61	6	4	27	1.41
16300388--16300421	10	3.6	9	85	14	50	67	11	0	20	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130