genome.fa.s556.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  77  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15723768--15723882	51	2.2	53	83	7	146	36	9	7	46	1.66
15725474--15725511	18	2.1	18	85	9	51	31	2	0	65	1.06
15725959--15726061	50	2.1	49	81	5	118	36	8	11	42	1.72
15726407--15726437	15	2.0	16	93	6	55	61	6	0	32	1.21
15727129--15727154	3	8.7	3	100	0	52	30	0	0	69	0.89
15728309--15728419	59	1.9	57	85	9	152	39	15	12	32	1.85
15728651--15728690	15	2.5	16	92	8	64	52	5	7	35	1.51
15729792--15729857	33	2.0	33	93	0	114	19	25	10	43	1.83
15731132--15731199	31	2.1	33	81	10	79	67	0	29	2	1.05
15741540--15741596	27	2.1	27	83	6	71	33	14	22	29	1.93
15742031--15742090	26	2.4	25	83	8	68	50	3	10	36	1.53
15743182--15743238	27	2.0	29	86	6	82	61	3	1	33	1.23
15743350--15743446	10	9.9	10	73	8	65	54	6	1	38	1.32
15743347--15743429	38	2.2	37	82	8	96	54	6	1	38	1.33
15743367--15743455	20	4.4	20	77	14	85	51	5	2	40	1.38
15743350--15743420	29	2.5	28	81	6	79	57	7	1	33	1.34
15743511--15743554	18	2.5	16	80	20	52	59	0	4	36	1.18
15743593--15743633	20	2.2	19	86	8	57	68	0	7	24	1.15
15743523--15743633	18	6.2	18	67	14	59	60	4	2	32	1.31
15743703--15743741	18	2.1	19	85	4	53	51	0	2	46	1.14
15743751--15743794	22	2.1	20	83	8	52	59	0	4	36	1.18
15743682--15743806	61	2.0	63	84	10	168	60	0	4	36	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15743951--15744006	26	2.1	27	83	9	71	37	3	3	55	1.35
15744269--15744320	21	2.5	22	75	9	54	38	0	7	53	1.30
15744248--15744348	49	2.0	48	81	14	116	39	0	6	52	1.35
15744319--15744361	19	2.3	19	88	11	63	48	0	4	46	1.22
15744474--15744528	19	2.8	20	80	2	67	52	0	3	43	1.18
15744485--15744550	20	3.4	19	79	8	60	46	0	4	48	1.22
15744689--15744744	27	2.1	27	83	6	69	60	3	7	28	1.40
15745041--15745252	61	3.5	61	72	17	163	45	9	5	39	1.60
15746496--15746530	18	2.1	18	89	10	56	68	0	2	28	1.04
15747649--15747677	2	14.5	2	100	0	58	51	0	0	48	1.00
15748416--15748598	97	1.9	98	85	4	253	44	3	6	45	1.46
15749442--15749691	131	1.9	129	85	1	347	46	3	6	44	1.45
15752453--15752681	127	1.8	128	83	6	306	37	12	7	42	1.72
15754489--15754628	29	4.8	30	78	6	137	22	3	29	45	1.69
15756205--15756229	12	2.1	12	100	0	50	52	0	0	48	1.00
15757916--15757971	28	2.0	28	85	3	76	42	0	3	53	1.18
15763728--15763766	20	2.0	20	94	0	69	66	5	0	28	1.12
15763771--15763987	58	3.6	56	72	21	172	43	5	3	47	1.44
15763832--15763922	32	2.7	32	72	23	80	46	5	4	43	1.46
15763939--15764007	21	3.2	22	73	8	61	42	2	1	53	1.24
15764651--15764888	133	1.8	131	84	4	291	42	6	3	47	1.46
15764801--15764980	99	1.8	99	88	7	276	48	6	2	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15764668--15765129	230	2.0	232	85	6	634	45	6	2	46	1.42
15765733--15765761	2	14.5	2	100	0	58	48	0	0	51	1.00
15767966--15768226	63	4.2	61	74	11	208	37	6	9	45	1.64
15768722--15768778	20	3.0	18	76	16	53	49	5	0	45	1.24
15768819--15768870	10	4.9	11	81	11	56	42	7	0	50	1.31
15768819--15768870	22	2.5	22	81	15	65	42	7	0	50	1.31
15768819--15768875	21	2.8	20	80	15	64	45	7	0	47	1.30
15768908--15769045	10	14.0	10	70	7	77	34	2	5	58	1.32
15768908--15769016	19	5.6	19	77	8	94	33	0	5	59	1.27
15768926--15768985	9	6.4	9	79	7	66	36	1	6	55	1.36
15768973--15769045	21	3.7	20	77	10	71	27	4	2	65	1.24
15769526--15769564	17	2.3	17	90	0	60	38	7	5	48	1.54
15770453--15770503	18	2.8	18	80	11	59	47	0	0	52	1.00
15771543--15771575	17	1.9	17	93	0	57	30	9	9	51	1.64
15771668--15771709	21	2.0	22	85	4	59	26	4	2	66	1.23
15771642--15771714	29	2.5	30	88	2	112	26	6	1	65	1.25
15771725--15771788	30	2.2	29	83	13	78	59	1	1	37	1.16
15773929--15774019	43	2.1	43	91	2	148	42	9	5	41	1.61
15774890--15775230	170	2.0	170	97	0	637	29	21	21	26	1.99
15776068--15776125	29	2.1	27	81	15	66	55	6	0	37	1.27
15779466--15779503	15	2.4	16	86	8	51	55	0	2	42	1.14
15779384--15779676	57	5.0	57	82	6	311	36	10	6	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15779384--15779676	117	2.5	116	84	3	356	36	10	6	46	1.64
15779384--15779677	59	5.1	58	83	4	317	36	10	6	46	1.63
15779684--15779717	6	5.7	6	85	0	50	79	0	2	17	0.86
15779684--15779720	18	2.1	18	90	5	58	78	0	2	18	0.87
15779752--15779786	3	11.7	3	100	0	70	68	0	0	31	0.90
15780060--15780097	19	2.1	19	95	5	69	0	26	0	73	0.83
15780505--15780559	9	6.2	9	79	12	53	52	0	0	47	1.00
15780509--15780564	8	6.6	8	79	16	60	50	0	0	50	1.00
15780511--15780570	17	3.4	17	78	17	61	48	0	0	51	1.00
15788420--15788445	13	2.0	13	100	0	52	15	0	15	69	1.20
15789516--15789547	15	2.1	15	94	0	55	50	3	0	46	1.17
15789467--15789709	131	1.9	127	89	3	378	45	5	2	46	1.37
15789671--15789740	21	3.2	23	70	13	58	41	2	1	54	1.24
15790440--15790469	6	5.0	6	91	0	51	30	33	20	16	1.94
15791013--15791195	98	1.9	97	87	6	271	46	6	1	44	1.39
15791099--15791323	125	1.8	120	82	11	287	46	5	2	45	1.39
15792638--15792672	17	2.0	18	88	5	54	37	0	2	60	1.12
15793907--15794113	62	3.4	62	84	6	253	39	6	8	45	1.60
15794613--15794653	19	2.2	18	86	4	55	46	2	2	48	1.28
15794597--15794655	20	3.0	21	81	16	65	49	3	1	45	1.28
15794697--15794744	10	4.7	10	82	12	62	52	4	0	43	1.20
15794668--15794744	32	2.5	31	78	4	73	61	5	0	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15794767--15794891	9	13.0	9	71	12	52	32	1	6	59	1.32
15794794--15794928	9	14.4	9	71	16	51	32	1	8	57	1.37
15794777--15794844	20	3.4	19	78	8	64	33	0	10	55	1.34
15794851--15794892	19	2.3	19	91	4	68	21	0	2	76	0.90
15794851--15794893	10	4.5	10	82	8	54	20	0	2	76	0.89
15795465--15795494	11	2.6	11	94	5	51	60	0	0	40	0.97
15795528--15795570	22	1.9	23	85	4	61	25	4	2	67	1.22
15795502--15795570	30	2.3	30	92	0	120	26	5	1	66	1.22
15795586--15795650	29	2.2	30	83	10	80	60	1	1	36	1.16
15796565--15796603	6	6.5	6	81	0	51	23	0	0	76	0.78
15796560--15796603	18	2.4	18	92	0	70	27	0	0	72	0.85
15796712--15796736	2	12.5	2	100	0	50	52	0	0	48	1.00
15796812--15796862	9	4.9	11	88	11	65	66	0	0	33	0.92
15798360--15798414	29	1.9	28	85	3	74	29	7	3	60	1.41
15799106--15799446	170	2.0	170	96	0	628	30	20	21	27	1.98
15800259--15800316	29	2.1	27	81	15	66	56	6	0	36	1.26
15804311--15804350	20	2.0	21	90	5	64	67	5	0	27	1.11
15804373--15804404	15	2.1	15	94	0	55	50	3	0	46	1.17
15804543--15804597	22	2.5	23	75	16	55	45	1	1	50	1.22
15804347--15804578	131	1.8	130	85	4	319	41	6	3	49	1.44
15805246--15805483	133	1.8	131	84	6	293	42	7	3	46	1.47
15805396--15805582	98	1.9	99	86	9	274	47	7	1	43	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15805497--15805735	125	1.9	124	86	6	340	45	5	2	46	1.37
15806323--15806349	2	13.5	2	100	0	54	48	0	0	51	1.00
15808598--15808821	62	3.6	62	72	14	167	39	7	8	44	1.63
15808596--15808821	125	1.8	122	80	12	271	39	7	8	44	1.63
15809321--15809393	20	3.7	19	75	14	67	52	6	0	41	1.28
15809513--15809641	9	13.3	9	70	13	60	33	2	7	56	1.41
15809513--15809563	20	2.7	19	88	8	77	37	0	7	54	1.29
15809502--15809563	29	2.1	29	82	5	72	37	0	8	54	1.30
15809569--15809602	10	3.3	10	88	8	50	20	0	2	76	0.92
15810426--15810466	17	2.4	18	84	12	59	36	0	2	60	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130