genome.fa.s556.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  94  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18420079--18420291	53	4.0	53	78	6	171	42	14	10	32	1.80
18431295--18431347	20	2.6	20	83	16	65	5	5	11	77	1.11
18432505--18432592	30	3.0	30	72	11	74	29	3	3	63	1.27
18433696--18433743	20	2.4	20	83	10	62	4	2	10	83	0.87
18435169--18435204	3	12.0	3	100	0	72	33	0	0	66	0.92
18436463--18436493	15	2.1	15	94	5	55	58	0	0	41	0.98
18438375--18438410	6	6.0	6	93	0	63	13	19	33	33	1.91
18439594--18439664	38	1.9	36	82	5	88	49	0	1	49	1.09
18439756--18439797	12	3.5	12	80	9	50	47	0	0	52	1.00
18440215--18440262	24	2.0	24	87	0	69	47	0	0	52	1.00
18444729--18444862	69	2.0	68	83	1	169	23	5	16	53	1.65
18445778--18445820	22	1.9	23	81	13	54	18	18	6	55	1.64
18445755--18446097	150	2.3	152	81	8	371	20	17	10	51	1.73
18451851--18451890	9	4.3	9	87	6	53	40	0	2	57	1.12
18452975--18453014	3	13.3	3	100	0	80	67	0	0	32	0.91
18452993--18453084	45	2.1	45	82	11	111	48	0	2	48	1.13
18453079--18453140	32	1.9	32	83	6	81	50	1	3	45	1.27
18453661--18453779	59	2.0	59	96	0	220	37	16	15	30	1.90
18454972--18455007	16	2.1	18	90	10	58	61	2	8	27	1.39
18454988--18455025	11	3.5	11	85	7	60	71	0	2	26	1.00
18460348--18460389	20	2.1	20	100	0	84	21	21	9	47	1.79
18464817--18464851	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18466526--18466558	11	3.1	11	91	4	50	63	0	3	33	1.10
18472944--18472987	20	2.2	20	92	4	72	11	6	29	52	1.63
18473274--18473322	20	2.4	21	93	6	91	28	22	20	28	1.98
18473429--18473473	12	3.8	12	82	11	56	20	4	0	75	0.97
18473426--18473473	17	2.7	18	78	18	55	20	4	0	75	0.97
18485049--18485084	9	4.0	9	85	0	54	33	11	0	55	1.35
18485471--18485513	20	2.2	19	83	8	50	16	4	27	51	1.64
18485850--18485892	13	3.4	13	84	12	54	13	0	4	81	0.84
18485911--18485951	18	2.4	17	87	4	55	24	4	0	70	1.06
18486860--18486952	45	2.1	45	84	8	118	38	7	11	41	1.70
18491194--18491219	6	4.3	6	100	0	52	46	38	0	15	1.46
18500097--18500201	14	7.5	13	71	20	61	20	3	23	52	1.63
18500100--18500156	26	2.2	26	84	6	71	26	3	15	54	1.57
18500151--18500201	13	3.9	13	82	10	59	15	3	25	54	1.58
18500332--18500357	3	8.7	3	100	0	52	30	0	0	69	0.89
18501892--18501933	21	2.0	21	85	4	57	11	19	16	52	1.74
18502790--18502859	23	2.9	23	73	14	61	25	2	0	71	1.00
18502796--18502848	20	2.7	20	80	13	74	24	3	0	71	1.02
18502809--18502860	16	3.0	16	83	16	52	25	3	0	71	1.03
18503571--18503720	72	2.1	72	83	2	185	45	9	24	21	1.81
18503733--18503802	35	2.0	35	86	5	97	45	12	21	20	1.84
18504388--18504442	20	2.8	21	78	15	64	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18505543--18505580	3	12.7	3	100	0	76	68	0	0	31	0.90
18505741--18506223	244	2.0	245	94	1	853	42	10	10	35	1.76
18508599--18508697	34	2.9	34	80	3	101	33	12	16	38	1.85
18510295--18510604	161	1.9	161	84	2	408	42	14	9	32	1.79
18517875--18517946	28	2.6	28	88	4	110	20	1	26	51	1.56
18517906--18518006	12	7.9	12	74	20	62	20	5	25	47	1.73
18517939--18517998	13	4.8	12	78	8	66	20	10	25	45	1.81
18517939--18518006	25	2.7	25	86	0	91	22	8	25	44	1.81
18521440--18521669	127	1.8	129	81	8	292	34	11	13	40	1.80
18532369--18532432	26	2.5	26	84	2	76	25	1	20	53	1.55
18532368--18532417	14	3.8	14	79	12	61	20	0	22	58	1.40
18532406--18532452	20	2.4	19	82	10	58	31	4	14	48	1.63
18532427--18532478	13	4.0	13	73	9	52	25	7	15	51	1.69
18532606--18532651	3	16.0	3	82	17	62	30	0	2	67	1.03
18533054--18533100	17	2.8	16	76	20	51	23	4	0	72	1.02
18535074--18535163	7	12.6	7	74	14	69	18	2	1	77	0.93
18535071--18535156	6	14.7	6	74	14	65	18	2	0	79	0.85
18535083--18535155	11	6.4	11	72	21	53	20	2	0	76	0.90
18542166--18542215	21	2.4	21	83	6	57	42	10	6	42	1.63
18550926--18550987	29	2.1	29	100	0	124	38	19	19	22	1.93
18552732--18552800	24	2.9	23	72	10	59	40	10	8	40	1.70
18564742--18564771	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18567681--18567711	14	2.3	14	94	5	55	19	3	0	77	0.90
18568986--18569299	153	2.0	154	88	2	470	44	4	3	47	1.40
18569289--18569343	16	3.6	16	76	11	53	56	5	0	38	1.23
18571763--18571949	22	8.5	22	70	10	89	53	3	8	34	1.48
18572262--18572676	22	18.7	22	70	11	143	50	5	8	34	1.57
18572434--18572894	66	7.0	66	71	8	265	49	7	9	34	1.63
18572777--18572903	65	1.9	66	80	4	150	45	6	11	36	1.66
18572819--18572927	22	5.0	22	75	5	105	41	6	11	41	1.66
18572821--18572927	44	2.5	44	83	4	137	41	6	11	41	1.67
18572810--18572936	66	1.9	67	82	6	161	43	5	11	40	1.63
18572981--18573109	11	11.8	10	67	19	53	49	4	5	40	1.46
18573000--18573068	32	2.1	33	91	2	113	47	1	7	43	1.39
18573032--18573090	23	2.6	22	79	10	66	49	3	5	42	1.41
18573403--18573481	22	3.5	22	81	3	95	50	6	7	35	1.56
18573399--18573487	45	2.0	46	88	2	135	48	6	7	37	1.59
18573397--18573492	22	4.3	22	74	10	88	47	6	7	38	1.56
18573635--18573784	22	6.8	22	78	8	81	46	6	4	42	1.51
18573698--18573798	11	9.3	10	70	14	67	51	5	1	40	1.38
18573660--18573798	22	6.3	22	81	5	147	49	6	2	41	1.43
18573839--18573889	22	2.3	22	77	16	61	39	7	17	35	1.79
18573971--18574033	24	2.6	24	85	5	74	44	3	12	39	1.59
18580828--18580864	18	2.1	18	89	0	56	13	32	8	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18582404--18582434	2	15.5	2	100	0	62	48	0	0	51	1.00
18583211--18583367	52	3.0	52	77	12	171	28	21	8	42	1.82
18583391--18583422	11	2.9	11	100	0	64	53	28	0	18	1.45
18585203--18585237	14	2.4	14	95	4	61	14	0	0	85	0.59
18585412--18585446	2	17.5	2	88	11	54	48	0	2	48	1.16
18587407--18587453	24	2.0	24	86	0	67	51	0	0	48	1.00
18594364--18594426	31	2.0	31	100	0	126	34	34	11	19	1.87
18594685--18595129	59	7.6	58	80	8	456	36	10	6	46	1.64
18594968--18595056	25	3.2	25	65	24	61	35	11	6	46	1.66
18597291--18597416	66	1.9	66	81	3	155	51	13	12	22	1.74
18597354--18597991	85	7.5	85	84	1	769	43	14	19	22	1.87
18597354--18597991	255	2.5	255	87	0	900	43	14	19	22	1.87
18599471--18599496	8	3.2	8	100	0	52	26	23	0	50	1.50
18603254--18603710	58	7.8	56	76	12	318	36	10	5	47	1.61
18603254--18603662	58	7.0	58	77	10	372	36	10	6	47	1.63
18606252--18606292	3	14.3	3	80	10	50	65	2	2	29	1.18
18606759--18606994	119	2.0	119	91	0	384	44	13	13	28	1.81
18607151--18607182	3	10.7	3	100	0	64	68	0	0	31	0.90
18610636--18610684	15	3.3	15	76	0	53	63	4	0	32	1.13
18627932--18627984	24	2.2	24	96	0	97	35	24	18	20	1.95
18635117--18635155	19	2.1	19	90	4	62	20	2	10	66	1.33
18637224--18637262	16	2.5	15	91	4	60	66	10	0	23	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18637458--18637502	22	2.0	22	82	0	54	42	2	6	48	1.41
18637600--18637638	18	2.2	18	90	4	62	56	12	10	20	1.65
18637696--18637740	18	2.5	18	82	7	56	33	13	15	37	1.86
18637857--18637891	18	1.9	18	88	0	52	40	17	11	31	1.85
18637912--18637983	18	4.0	18	75	13	76	40	13	12	33	1.83
18637870--18637984	18	6.4	18	68	20	53	42	13	13	30	1.83
18637962--18638017	25	2.2	25	87	3	76	39	17	7	35	1.78
18638031--18638093	18	3.6	18	73	2	56	42	15	14	26	1.86
18638071--18638180	47	2.3	47	78	6	107	38	16	12	32	1.86
18638231--18638295	17	3.8	17	75	2	58	33	6	15	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130