genome.fa.s556.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  97  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19031031--19031197	83	2.0	86	86	4	241	40	19	13	26	1.88
19032224--19032261	10	3.8	10	80	13	51	10	5	0	84	0.77
19032219--19032262	21	2.2	20	88	8	63	11	9	0	79	0.93
19032224--19032262	21	1.9	20	94	5	69	10	7	0	82	0.86
19042659--19043038	59	6.6	57	77	10	353	36	14	6	43	1.71
19042661--19043048	57	6.7	58	78	8	407	35	13	6	43	1.70
19043060--19043135	9	8.8	8	74	17	55	77	1	2	18	0.95
19043065--19043134	5	14.8	5	73	21	55	78	1	1	18	0.90
19043066--19043128	17	3.5	17	75	23	65	77	1	1	19	0.93
19043060--19043134	22	3.4	22	75	18	75	77	1	2	18	0.96
19044036--19044123	21	4.1	22	75	11	94	59	5	4	30	1.41
19044187--19044263	17	4.6	17	70	22	65	71	2	2	23	1.11
19044196--19044263	26	2.6	27	77	15	72	72	2	1	23	1.07
19044186--19044268	21	4.0	21	73	16	66	71	2	2	24	1.10
19045261--19045300	14	2.9	14	88	7	55	80	2	2	15	0.93
19045275--19045311	14	2.5	15	91	4	58	78	0	2	18	0.87
19045899--19045937	19	2.0	20	85	5	53	28	17	5	48	1.68
19046948--19046993	19	2.6	17	90	10	67	17	2	6	73	1.14
19052733--19052764	2	16.0	2	100	0	64	50	0	0	50	1.00
19053743--19053810	21	3.5	19	75	17	68	36	7	1	54	1.37
19054028--19054087	29	2.0	31	90	6	97	51	3	0	45	1.17
19055726--19055777	13	3.5	15	79	15	54	34	9	0	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19082307--19082377	30	2.3	30	92	2	106	35	7	0	57	1.26
19082511--19082588	16	4.9	16	74	16	72	51	3	0	44	1.19
19082521--19082583	31	2.1	32	85	8	87	50	4	0	44	1.23
19082520--19082612	47	1.9	49	86	4	136	52	4	0	43	1.21
19082693--19082745	20	2.7	20	82	8	65	41	1	0	56	1.10
19082945--19082988	12	3.8	11	77	11	52	52	0	0	47	1.00
19083077--19083108	17	1.9	16	93	6	55	53	0	3	43	1.16
19083060--19083186	57	2.2	57	80	8	134	53	1	1	43	1.19
19083111--19083277	8	23.0	7	64	26	55	51	1	2	44	1.25
19083111--19083381	18	14.2	18	66	24	85	50	1	3	43	1.29
19083163--19083269	29	3.7	29	77	13	112	50	2	2	43	1.31
19083071--19083386	96	3.3	94	85	5	418	51	1	3	43	1.28
19083165--19083277	15	7.6	15	64	28	55	50	2	2	44	1.30
19083304--19083348	19	2.6	16	78	18	54	60	0	4	35	1.17
19083303--19083423	40	3.1	39	78	7	129	52	0	2	44	1.14
19083484--19083600	11	11.0	11	69	7	80	53	2	3	40	1.31
19083520--19083686	21	8.1	20	71	9	95	48	2	2	46	1.30
19083698--19083751	7	8.0	7	75	22	53	42	0	0	57	0.98
19083675--19083745	26	2.8	26	78	8	83	45	0	1	53	1.09
19084158--19084208	23	2.2	23	96	0	93	49	1	3	45	1.32
19084409--19084463	29	1.9	28	88	3	83	61	0	1	36	1.06
19084736--19084788	27	2.0	27	96	0	97	22	30	32	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19086669--19086730	30	2.0	31	84	3	81	48	4	9	37	1.57
19088214--19088304	40	2.3	40	90	0	137	43	13	13	29	1.81
19091429--19091460	9	3.4	9	91	8	55	78	3	0	18	0.89
19091495--19091549	26	2.2	25	80	9	58	58	1	3	36	1.26
19091515--19091586	18	3.9	18	73	8	58	58	8	0	33	1.28
19091537--19091615	37	2.1	37	88	9	117	59	8	1	30	1.36
19091627--19091665	10	4.0	10	93	3	62	71	5	0	23	1.05
19091714--19091769	21	2.7	21	83	5	69	58	3	1	35	1.26
19091837--19091891	24	2.3	24	78	6	58	61	5	5	27	1.40
19091884--19091922	18	2.1	19	90	4	62	48	2	0	48	1.15
19092046--19092088	19	2.3	19	88	8	61	39	6	0	53	1.28
19093387--19093457	22	3.3	21	80	11	72	33	2	2	60	1.26
19093867--19093931	33	2.0	32	84	3	85	53	0	1	44	1.09
19094066--19094116	23	2.2	23	89	6	77	35	0	0	64	0.94
19094065--19094133	23	3.0	23	81	10	63	34	0	0	65	0.93
19094711--19094769	12	5.2	12	74	17	54	47	0	1	50	1.11
19094727--19094767	20	2.0	21	90	4	66	48	0	2	48	1.14
19094786--19094828	19	2.3	19	87	0	59	67	2	0	30	1.03
19095612--19095637	12	2.2	12	100	0	52	73	0	0	26	0.84
19098329--19098472	73	2.0	73	95	0	261	30	20	13	35	1.91
19099895--19099926	2	16.0	2	100	0	64	50	0	0	50	1.00
19100887--19100983	21	4.6	21	72	12	65	44	2	3	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19100902--19100987	21	4.2	20	77	5	82	40	2	2	54	1.26
19100900--19101021	62	1.9	64	83	3	158	40	3	4	52	1.37
19101358--19102004	22	29.3	22	67	12	166	38	8	4	47	1.56
19101358--19102034	44	15.3	44	70	11	269	38	8	5	47	1.56
19101358--19102046	66	10.4	66	69	13	252	38	8	5	47	1.57
19101703--19102011	65	4.7	65	72	8	180	39	9	5	46	1.59
19101991--19102052	22	2.8	22	80	4	63	38	9	8	43	1.67
19102611--19102833	59	3.8	60	85	8	287	35	12	6	44	1.69
19102611--19102843	119	2.0	117	87	7	337	35	12	6	45	1.68
19102815--19102845	16	1.9	16	100	0	62	32	0	9	58	1.31
19103815--19103925	21	6.1	18	69	19	54	71	4	6	18	1.25
19103815--19103854	18	2.2	18	86	4	53	70	7	7	15	1.33
19103858--19103935	21	3.9	20	80	9	88	71	2	3	21	1.14
19103800--19103896	47	2.0	47	82	10	113	73	4	8	14	1.22
19103877--19103975	22	4.1	24	70	24	75	67	2	4	26	1.19
19104074--19104121	22	2.2	22	88	7	71	77	2	0	20	0.88
19104086--19104119	17	2.1	17	89	10	54	76	2	0	20	0.92
19104269--19104297	12	2.3	13	94	5	51	3	0	6	89	0.57
19104304--19104478	41	4.2	42	89	2	228	33	24	18	24	1.97
19104304--19104478	83	2.1	84	87	3	246	33	24	18	24	1.97
19104456--19104502	24	2.0	24	100	0	94	25	17	19	38	1.92
19104415--19104543	65	2.0	65	96	0	240	32	21	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19104480--19104706	41	5.5	41	91	3	359	37	21	16	24	1.93
19104373--19104582	106	2.0	107	94	0	368	34	21	17	25	1.95
19104341--19104625	147	1.9	148	90	0	455	35	22	16	25	1.95
19104996--19105077	43	1.9	42	87	7	121	34	15	12	37	1.85
19106362--19106421	8	7.8	8	80	9	54	10	15	0	75	1.05
19106362--19106410	17	2.9	17	81	6	55	12	16	0	71	1.14
19106354--19106414	25	2.6	25	76	7	65	9	14	0	75	1.04
19106387--19106458	29	2.5	28	77	11	83	11	18	0	70	1.15
19106395--19106450	27	2.0	29	86	6	80	8	16	0	75	1.05
19110902--19110946	18	2.5	18	82	10	56	80	0	11	8	0.92
19110963--19111127	58	2.8	58	87	6	226	35	12	7	44	1.70
19111106--19111136	16	1.9	16	100	0	62	32	0	9	58	1.31
19111166--19111209	11	3.8	11	82	11	61	72	0	11	15	1.11
19111147--19111216	5	13.2	5	72	21	54	75	0	8	15	1.03
19111185--19111217	17	1.9	17	88	11	50	72	0	12	15	1.12
19112084--19112130	19	2.4	19	92	3	76	74	8	6	10	1.22
19112104--19112176	31	2.3	30	81	11	83	76	4	6	12	1.12
19112073--19112177	49	2.1	49	82	8	124	76	4	7	11	1.15
19112135--19112199	18	3.3	20	82	10	80	73	3	4	18	1.13
19112159--19112340	4	43.5	4	67	18	61	65	3	3	27	1.26
19112136--19112210	36	2.1	35	83	14	91	73	2	4	20	1.12
19112135--19112230	19	5.1	19	75	9	72	70	2	3	23	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19112271--19112375	41	2.5	40	77	7	95	67	3	5	22	1.28
19112355--19112405	6	8.7	6	82	8	61	78	1	0	19	0.85
19112355--19112405	17	2.9	17	82	8	59	78	1	0	19	0.85
19112355--19112405	23	2.2	24	86	10	70	78	1	0	19	0.85
19112538--19112639	50	2.0	50	92	7	172	29	1	13	54	1.50
19112788--19112847	22	2.7	22	84	0	75	35	8	10	46	1.67
19112836--19112928	22	4.2	22	75	5	98	39	5	5	49	1.48
19112846--19112953	44	2.5	44	80	6	110	44	7	4	43	1.53
19112845--19112940	22	4.3	23	71	17	78	42	6	5	45	1.51
19112974--19113013	21	1.9	21	84	0	53	37	10	7	45	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130