genome.fa.s556.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  7  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830146--1830206	30	2.0	30	100	0	122	16	13	16	54	1.72
1838505--1838532	12	2.3	12	100	0	56	46	0	0	53	1.00
1838946--1839005	18	3.1	18	72	28	52	45	0	0	55	0.99
1838955--1838999	24	2.0	22	86	8	63	46	0	0	53	1.00
1838977--1839037	24	2.6	24	72	12	63	47	0	3	49	1.18
1841856--1841912	28	2.0	28	93	0	96	45	14	14	26	1.82
1842379--1842418	2	20.0	2	100	0	80	50	0	0	50	1.00
1849052--1849085	10	3.4	10	88	12	52	52	0	0	47	1.00
1850929--1851015	30	2.9	29	76	10	79	36	2	2	58	1.23
1851043--1851111	30	2.3	29	87	2	93	46	1	7	44	1.40
1862911--1862951	21	1.9	22	90	5	66	68	2	0	29	1.03
1863967--1864035	23	3.0	24	75	14	65	44	5	5	43	1.52
1863991--1864040	23	2.2	23	86	13	68	42	4	6	48	1.46
1872179--1872205	2	13.5	2	100	0	54	51	0	0	48	1.00
1872205--1872246	2	21.0	2	100	0	84	50	0	50	0	1.00
1872827--1873105	152	1.8	152	81	6	350	34	17	15	32	1.91
1872956--1873337	168	2.3	168	83	4	493	33	18	15	32	1.92
1874202--1874231	2	15.0	2	100	0	60	50	0	0	50	1.00
1876307--1876824	168	3.1	168	79	6	582	34	16	15	34	1.89
1878667--1878749	41	2.0	41	92	0	139	49	12	8	30	1.69
1879434--1879466	15	2.1	16	88	5	50	21	9	15	54	1.68
1882664--1882688	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883426--1883594	82	2.1	82	86	0	230	34	20	11	34	1.88
1886100--1886134	2	17.5	2	87	0	52	45	0	0	54	0.99
1886738--1887265	168	3.1	168	80	2	605	34	15	14	35	1.88
1888116--1888153	2	19.0	2	94	0	67	50	2	0	47	1.15
1890743--1890778	18	2.0	18	88	0	54	16	27	33	22	1.95
1904861--1904914	22	2.4	22	93	3	90	55	3	7	33	1.45
1915726--1915805	27	3.0	27	79	0	79	25	47	11	16	1.79
1917310--1917364	27	2.0	27	86	6	76	49	0	0	50	1.00
1919707--1919738	2	16.0	2	100	0	64	50	50	0	0	1.00
1924470--1925313	280	3.0	280	98	0	1634	37	15	14	33	1.87
1933018--1933080	11	5.7	11	68	20	51	36	1	1	60	1.16
1938234--1938284	19	2.7	20	79	14	54	49	0	0	50	1.00
1938307--1938336	15	1.9	16	93	6	53	46	0	0	53	1.00
1938404--1938473	37	1.9	36	82	8	88	54	2	1	41	1.24
1938444--1938473	12	2.6	11	90	10	51	56	0	0	43	0.99
1938873--1938917	20	2.2	20	88	7	65	64	2	0	33	1.06
1946346--1946375	15	2.0	15	93	0	51	46	10	23	20	1.80
1954400--1954430	16	1.9	16	93	0	53	54	0	3	41	1.16
1954406--1954443	16	2.3	17	86	4	51	52	0	2	44	1.14
1954534--1954563	13	2.2	14	94	5	53	70	0	0	30	0.88
1957870--1957897	8	3.5	8	100	0	56	89	0	0	10	0.49
1957914--1958009	32	3.2	32	62	27	82	37	6	13	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957908--1958025	58	2.0	58	98	0	227	38	7	13	39	1.73
1958901--1958960	22	2.7	22	77	15	61	40	0	1	58	1.08
1959281--1959315	2	17.5	2	100	0	70	51	0	0	48	1.00
1959375--1959408	17	1.9	18	88	5	52	41	2	0	55	1.15
1960292--1960326	2	17.5	2	100	0	70	48	0	0	51	1.00
1960599--1960632	15	2.2	16	94	5	61	76	0	0	23	0.79
1960599--1960633	8	4.4	8	89	10	54	77	0	0	22	0.78
1960599--1960655	24	2.3	24	82	8	62	77	3	1	17	1.00
1964604--1964633	12	2.6	12	94	5	53	23	0	3	73	0.98
1964799--1964834	19	1.9	19	88	5	56	36	0	0	63	0.94
1965440--1965515	35	2.2	35	81	11	86	40	15	3	39	1.66
1965815--1965863	19	2.6	18	80	6	53	24	10	6	59	1.53
1966568--1966614	23	2.0	24	88	8	71	80	0	6	12	0.88
1966618--1966655	3	12.7	3	100	0	76	68	0	0	31	0.90
1972370--1972422	21	2.5	21	84	0	70	54	1	9	33	1.43
1982785--1982846	18	3.2	19	72	21	56	50	4	12	32	1.62
1982993--1983024	16	2.0	17	88	11	50	34	3	0	62	1.11
1982998--1983042	22	2.0	23	86	4	65	42	2	0	55	1.12
1988729--1988776	15	3.2	15	71	11	53	64	4	4	27	1.30
2006037--2006108	28	2.6	29	78	8	80	51	0	2	45	1.15
2011686--2011736	17	2.9	17	85	2	57	58	0	0	41	0.98
2018835--2018868	16	2.1	17	88	5	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019836--2019880	17	2.7	16	80	10	54	20	11	0	68	1.19
2022116--2022153	16	2.4	16	86	4	51	31	0	2	65	1.06
2022289--2022333	12	4.0	12	75	13	51	46	0	2	51	1.13
2022699--2022758	26	2.4	25	85	2	84	46	1	3	48	1.28
2022935--2022979	23	2.0	22	86	4	63	53	0	4	42	1.21
2023251--2023276	10	2.6	10	100	0	52	15	0	0	84	0.62
2024863--2024904	22	2.0	21	85	4	57	45	9	2	42	1.49
2025341--2025391	22	2.2	23	82	6	68	60	0	0	39	0.97
2025684--2025724	21	1.9	21	90	5	64	58	2	0	39	1.11
2025876--2025905	1	30.0	1	93	0	51	3	96	0	0	0.21
2032952--2032978	13	2.1	13	100	0	54	29	18	14	37	1.91
2034450--2034496	16	2.9	16	75	12	51	34	4	2	59	1.29
2034625--2034663	18	2.2	18	90	0	60	43	0	0	56	0.99
2034629--2034664	18	2.0	18	94	0	63	41	0	0	58	0.98
2034632--2034671	18	2.2	18	86	0	53	47	0	2	50	1.14
2037809--2038172	14	24.7	15	65	15	77	21	1	26	50	1.56
2037991--2038050	21	2.9	21	78	9	77	20	0	23	56	1.42
2038034--2038201	31	5.6	30	71	7	101	23	0	23	52	1.47
2038019--2038193	61	2.9	61	83	7	216	22	0	22	54	1.45
2038027--2038230	30	6.9	30	71	9	125	23	0	25	50	1.52
2038364--2038408	3	14.7	3	90	4	72	31	2	0	66	1.04
2039756--2039802	14	3.5	13	85	8	58	29	2	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2039763--2039806	14	3.2	13	87	9	61	29	2	0	68	1.02
2042418--2042460	22	2.0	22	86	4	61	65	6	4	23	1.37
2042516--2042576	11	5.8	11	73	11	56	52	1	0	45	1.10
2042529--2042575	14	3.2	14	78	21	60	55	0	0	44	0.99
2043074--2043118	21	2.1	22	87	4	65	60	2	0	37	1.09
2043494--2043518	5	5.0	5	100	0	50	0	20	0	80	0.72
2045700--2045746	22	2.1	22	84	7	60	55	0	2	42	1.12
2045793--2045828	2	18.0	2	94	0	63	52	0	0	47	1.00
2056518--2056542	8	3.1	8	100	0	50	52	0	0	48	1.00
2057730--2057763	18	1.9	17	88	5	50	32	0	0	67	0.91
2057724--2057772	23	2.1	24	85	11	66	34	0	0	65	0.93
2060286--2060343	29	2.0	29	96	0	107	56	10	0	32	1.33
2074327--2074388	21	2.9	21	80	4	70	58	1	3	37	1.24
2074327--2074388	11	5.8	10	76	14	61	58	1	3	37	1.24
2074446--2074478	11	3.0	11	90	0	57	48	0	6	45	1.27
2081836--2081915	40	2.0	41	83	11	103	50	3	0	46	1.19
2082637--2082693	25	2.2	27	76	20	68	64	0	0	35	0.93
2084124--2084217	47	2.0	47	87	0	134	22	7	21	48	1.74
2086968--2087008	20	2.0	20	95	0	73	34	26	14	24	1.94
2089568--2089606	18	2.2	17	90	4	60	53	2	0	43	1.14
2108582--2108649	26	2.7	24	78	10	64	36	1	2	58	1.22
2108723--2108774	19	2.8	20	72	21	58	34	5	1	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2113108--2113185	34	2.2	35	80	11	88	38	1	0	60	1.05
2113107--2113185	15	4.7	15	70	20	50	37	1	0	60	1.05
2116317--2116389	34	2.2	34	90	7	114	34	24	15	26	1.94
2124612--2124663	24	2.2	23	82	3	59	44	1	5	48	1.38
2124743--2124783	16	2.4	18	80	8	50	43	0	4	51	1.23
2131692--2131742	26	2.0	26	84	0	66	45	3	1	49	1.32
2131842--2132162	128	2.6	125	82	7	359	44	10	4	40	1.59
2131993--2132043	16	3.1	16	81	16	59	54	3	0	41	1.19
2132118--2132162	15	2.8	17	80	16	60	53	11	0	35	1.37
2132159--2132194	15	2.2	18	85	14	51	72	2	0	25	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130