genome.fa.s556.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  20  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5425548--5425899	23	14.9	23	68	20	151	54	1	1	41	1.21
5425536--5425881	65	5.3	63	70	19	180	54	1	1	42	1.21
5425666--5425785	3	40.7	3	69	18	56	57	0	0	41	1.04
5425660--5425900	26	9.1	26	68	21	92	55	2	0	41	1.15
5425536--5425877	31	10.5	33	65	25	60	54	1	1	42	1.21
5425938--5426022	18	4.9	18	75	17	83	50	0	0	49	1.00
5425944--5426022	17	4.7	16	78	13	70	49	0	0	50	1.00
5425935--5426022	32	2.5	36	81	18	107	50	0	0	50	1.00
5426048--5426082	16	2.3	15	90	5	52	82	2	0	14	0.77
5426048--5426082	15	2.3	15	90	9	54	82	2	0	14	0.77
5426135--5426207	25	2.8	25	89	6	101	45	4	0	50	1.20
5426149--5426204	13	4.2	13	84	11	69	48	5	0	46	1.25
5426415--5426466	16	3.4	16	75	20	56	40	0	1	57	1.10
5426415--5426484	30	2.3	29	78	7	77	44	0	1	54	1.09
5426453--5426504	22	2.5	22	93	6	90	50	0	0	50	1.00
5432973--5432999	14	1.9	14	100	0	54	51	7	3	37	1.48
5432968--5433034	34	2.0	33	82	2	80	46	5	4	43	1.48
5433057--5433100	14	3.1	14	83	0	52	52	0	2	45	1.13
5432972--5433087	48	2.4	48	81	2	135	46	6	2	43	1.44
5435631--5435679	3	16.3	3	86	0	71	2	36	0	61	1.08
5443436--5443521	43	2.0	42	93	2	145	32	27	12	26	1.93
5444612--5444948	167	2.0	167	100	0	674	25	16	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5457545--5457588	20	2.2	20	92	4	72	38	18	2	40	1.63
5463681--5463731	19	2.8	18	77	16	59	27	1	13	56	1.48
5464194--5464226	6	5.7	6	85	7	50	81	0	3	15	0.80
5465343--5465396	19	2.7	20	78	15	58	40	1	3	53	1.29
5465351--5465399	22	2.2	23	78	14	57	40	0	4	55	1.19
5470524--5470553	14	2.1	14	93	0	51	53	0	0	46	1.00
5472114--5472151	13	2.8	14	85	14	53	23	0	0	76	0.79
5474401--5474486	16	5.5	16	67	10	61	43	30	5	20	1.76
5476294--5476332	18	2.2	18	85	0	51	38	0	5	56	1.22
5479659--5479705	12	3.8	12	79	20	53	6	34	2	57	1.36
5481868--5481904	18	2.0	20	89	10	60	62	2	8	27	1.37
5487744--5487774	2	15.5	2	100	0	62	48	0	0	51	1.00
5491158--5491186	2	14.5	2	100	0	58	0	51	0	48	1.00
5493312--5493368	19	3.0	19	73	14	55	49	0	0	50	1.00
5493440--5493468	7	4.3	7	95	4	51	37	17	13	31	1.89
5499070--5499124	27	2.0	27	100	0	110	20	14	7	58	1.60
5499389--5499425	18	2.1	18	100	0	74	27	16	8	48	1.74
5500911--5500950	20	2.0	20	85	9	55	30	7	15	47	1.72
5511886--5511934	16	2.9	16	87	9	62	22	0	2	75	0.90
5511878--5511934	19	3.2	19	80	14	75	21	1	1	75	0.98
5511884--5511936	7	7.9	7	82	14	51	22	0	1	75	0.90
5512042--5512168	4	32.2	4	69	15	54	28	3	2	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5512042--5512209	22	7.2	25	70	21	109	27	4	2	65	1.25
5512124--5512204	21	3.8	20	80	8	90	23	6	1	69	1.19
5512108--5512215	43	2.5	43	85	11	132	23	5	1	69	1.19
5512572--5512657	5	16.8	5	76	17	79	17	4	0	77	0.93
5512572--5512657	12	7.8	12	70	25	50	17	4	0	77	0.93
5512654--5513120	57	8.1	57	82	7	475	43	7	12	37	1.69
5512800--5512888	30	3.0	30	66	12	74	44	4	11	39	1.60
5515161--5515194	14	2.4	14	90	0	50	44	0	0	55	0.99
5518851--5518894	13	3.5	13	84	12	56	63	0	6	29	1.20
5519181--5519234	22	2.4	22	81	9	65	46	0	3	50	1.19
5521513--5521538	2	13.0	2	100	0	52	50	0	0	50	1.00
5522160--5522214	21	2.6	21	82	2	65	34	7	14	43	1.73
5522177--5522239	21	3.0	20	78	17	67	31	4	19	44	1.71
5522160--5522239	42	1.9	42	82	10	101	33	6	16	43	1.73
5522710--5522870	22	7.3	22	71	13	73	40	5	6	47	1.52
5522716--5522843	11	11.6	11	65	14	50	39	2	7	51	1.42
5522837--5522893	30	1.9	30	89	7	89	45	10	3	40	1.56
5522863--5522916	22	2.5	22	84	6	65	44	11	3	40	1.58
5523161--5523231	21	3.2	21	75	11	61	39	9	4	46	1.57
5522869--5523363	22	22.5	22	67	11	138	35	10	5	47	1.62
5523679--5523804	22	5.8	22	81	4	112	38	7	6	47	1.56
5523679--5523804	44	2.9	44	80	1	137	38	7	6	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5523821--5523889	22	3.2	22	72	10	61	36	7	8	47	1.62
5524012--5524050	8	5.1	8	84	12	55	33	0	2	64	1.08
5523903--5524322	22	19.4	22	67	8	171	36	7	4	51	1.50
5524106--5524200	43	2.2	45	81	5	106	40	8	3	48	1.49
5524146--5524200	11	5.0	11	70	16	51	43	5	0	50	1.25
5524165--5524310	65	2.2	67	80	4	172	41	6	2	48	1.44
5524148--5524309	87	1.9	87	80	5	193	41	6	2	48	1.43
5524313--5524343	14	2.2	14	94	0	53	41	6	0	51	1.27
5524352--5524422	22	3.2	22	85	0	79	39	8	2	49	1.48
5524367--5524456	44	2.0	44	82	4	110	35	8	5	50	1.57
5524511--5524564	19	2.8	19	77	5	56	40	1	3	53	1.29
5524515--5524623	22	5.1	22	73	5	80	41	3	2	52	1.33
5534524--5534585	28	2.1	30	85	5	83	54	0	1	43	1.09
5547942--5547974	16	2.1	16	94	0	57	3	42	0	54	1.15
5555166--5555220	21	2.7	21	78	15	62	70	0	1	27	0.97
5555330--5555381	17	2.9	17	84	15	70	78	3	1	15	0.98
5555337--5555394	30	1.9	30	86	6	82	77	3	1	17	0.99
5555667--5555707	3	13.7	3	100	0	82	34	0	0	65	0.93
5556576--5556610	17	2.1	17	88	0	52	20	8	8	62	1.49
5556881--5556943	33	1.9	33	96	0	117	33	14	14	38	1.86
5558115--5558281	29	5.7	29	73	12	92	22	0	29	47	1.56
5558246--5558278	16	2.1	16	88	5	50	27	0	24	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5558237--5558280	15	2.9	15	77	12	54	27	0	27	45	1.54
5558121--5558296	58	3.0	58	74	11	148	22	0	31	45	1.57
5558302--5558349	15	3.0	16	90	9	80	20	0	29	50	1.49
5558295--5558339	7	6.0	7	82	14	54	17	2	28	51	1.58
5558302--5558343	8	5.4	8	83	16	61	21	0	30	47	1.51
5558295--5558358	31	2.0	32	87	3	94	20	1	26	51	1.56
5558295--5558343	15	3.2	15	91	5	80	20	2	30	46	1.62
5558568--5558598	16	1.9	16	93	0	53	35	0	9	54	1.33
5558778--5558839	18	3.5	18	77	14	58	72	1	1	24	1.02
5559825--5559859	7	4.9	7	92	3	52	25	0	0	74	0.82
5560209--5560260	24	2.2	24	82	3	61	36	19	19	25	1.95
5560246--5560417	87	2.0	87	81	0	200	38	16	20	23	1.93
5560336--5560537	109	1.9	109	80	2	244	39	20	19	20	1.93
5560430--5560692	87	3.0	86	82	3	305	42	19	17	20	1.89
5560440--5560712	85	3.2	84	82	4	303	42	18	17	21	1.90
5561283--5561597	65	4.8	65	81	6	341	34	14	20	30	1.93
5561283--5561597	33	9.6	33	82	5	336	34	14	20	30	1.93
5561283--5561598	98	3.2	97	87	2	418	34	14	20	30	1.93
5563552--5563584	12	2.8	12	86	13	50	6	12	3	78	1.04
5563553--5563583	11	2.7	11	95	5	53	6	12	3	77	1.08
5563843--5564010	30	5.8	28	76	11	108	22	0	29	47	1.56
5563849--5563988	30	4.8	29	75	11	119	22	0	30	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5563975--5564007	16	2.1	16	88	5	50	27	0	24	48	1.51
5563966--5564009	15	2.9	15	77	12	54	27	0	27	45	1.54
5563874--5564025	58	2.6	58	75	13	152	24	0	28	46	1.58
5564024--5564068	7	6.0	7	82	14	54	17	2	28	51	1.58
5564031--5564071	8	5.2	8	83	16	59	19	0	31	48	1.49
5564024--5564071	15	3.1	15	91	5	78	18	2	31	47	1.60
5564296--5564326	16	1.9	16	93	0	53	35	0	9	54	1.33
5564504--5564553	17	3.1	15	81	16	55	74	4	0	22	0.99
5564526--5564566	17	2.5	16	96	4	73	75	0	0	24	0.80
5564526--5564563	8	4.8	8	87	12	60	78	0	0	21	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130