genome.fa.s556.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  19  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5192340--5192507	28	5.9	28	80	8	144	50	30	0	19	1.52
5192399--5192507	14	7.7	15	68	16	63	52	28	0	19	1.46
5192267--5192514	29	8.6	27	75	12	156	47	31	0	20	1.56
5192527--5192573	22	2.2	22	88	3	69	51	25	0	23	1.49
5193942--5193982	12	3.2	12	80	12	55	48	0	0	51	1.00
5193944--5193995	26	2.0	26	88	7	79	46	0	0	53	1.00
5193942--5193988	14	3.5	14	77	5	53	46	0	0	53	1.00
5197114--5197142	5	6.0	5	92	8	51	41	0	0	58	0.98
5203887--5203922	3	11.7	3	94	5	63	33	0	2	63	1.08
5209571--5209601	14	2.2	14	94	0	53	61	9	6	22	1.50
5212543--5212632	32	2.8	32	78	9	94	50	14	1	34	1.50
5220126--5220163	7	5.6	7	87	3	51	7	2	2	86	0.74
5220126--5220166	20	2.0	20	86	9	57	9	2	2	85	0.78
5221935--5221973	18	2.1	19	85	9	53	48	2	0	48	1.15
5225132--5225160	15	1.9	15	100	0	58	44	13	13	27	1.82
5228675--5228789	35	3.3	35	78	0	122	20	20	13	45	1.85
5229187--5229260	34	2.1	35	82	2	87	21	20	10	47	1.80
5228905--5229350	35	12.7	35	70	7	152	19	15	12	52	1.75
5229152--5229350	70	2.9	68	72	9	177	19	17	13	49	1.79
5229010--5229375	139	2.6	139	77	8	357	19	17	12	51	1.76
5229421--5229487	35	1.9	34	85	8	91	20	25	11	41	1.87
5229421--5229499	35	2.3	35	80	10	90	20	22	10	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5230980--5231017	3	12.7	3	94	0	67	65	2	0	31	1.06
5231424--5231462	14	2.8	14	84	0	51	53	25	0	20	1.45
5231450--5231536	30	2.9	31	77	14	85	45	32	1	20	1.59
5231522--5231573	22	2.3	22	81	15	61	46	25	0	28	1.53
5231524--5231658	71	1.9	70	84	13	179	45	22	2	29	1.65
5231578--5231630	25	2.2	23	83	12	63	43	22	1	32	1.64
5231630--5231683	21	2.5	21	87	3	72	44	29	1	24	1.64
5245104--5245139	19	1.9	18	88	5	54	55	0	0	44	0.99
5248192--5248229	9	4.3	9	83	6	51	55	2	0	42	1.14
5248199--5248245	8	5.9	8	76	18	53	53	2	0	44	1.12
5248192--5248253	17	3.8	16	78	18	65	53	1	0	45	1.10
5251155--5251183	12	2.3	13	94	5	51	0	27	0	72	0.85
5251341--5251692	104	3.4	104	93	0	605	26	33	17	23	1.96
5251525--5251571	23	2.0	23	100	0	94	25	31	17	25	1.97
5251629--5251673	23	2.1	21	88	12	65	22	31	20	26	1.98
5251588--5251779	87	2.2	87	94	0	339	24	33	18	23	1.96
5251716--5251762	23	2.0	23	100	0	94	21	31	21	25	1.98
5251762--5251796	17	2.1	17	100	0	70	34	31	17	17	1.93
5251901--5251954	25	2.2	25	93	0	90	38	16	9	35	1.81
5262201--5262592	213	1.8	213	97	0	739	30	16	20	32	1.95
5268203--5268260	18	3.2	17	79	11	62	53	0	0	46	1.00
5268183--5268269	36	2.4	36	77	12	88	48	1	0	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5268371--5268423	21	2.5	22	73	17	58	39	5	1	52	1.36
5270095--5270142	24	2.0	24	88	8	71	54	0	2	43	1.12
5272270--5272303	16	2.1	17	88	5	52	50	0	2	47	1.16
5272952--5272998	18	2.4	18	77	22	51	42	0	36	21	1.53
5273594--5273631	15	2.5	15	91	0	58	0	18	0	81	0.69
5276578--5276617	13	3.0	14	76	23	50	45	0	2	52	1.14
5276530--5276641	58	1.9	58	82	7	138	50	0	1	48	1.11
5276557--5276624	25	2.7	25	84	8	84	47	0	2	50	1.16
5276566--5276641	29	2.6	28	70	13	64	47	0	2	50	1.15
5276720--5276796	18	4.2	18	83	3	91	50	0	0	49	1.00
5276709--5276782	37	2.2	34	80	17	84	43	1	0	55	1.08
5276721--5276769	26	1.9	25	88	12	73	46	0	0	53	1.00
5285023--5285074	24	2.2	24	89	0	77	19	23	3	53	1.61
5286965--5287014	24	2.1	24	96	0	91	16	24	4	56	1.57
5302876--5302900	13	1.9	13	100	0	50	88	4	8	0	0.64
5306529--5306576	13	3.6	13	76	15	53	81	0	18	0	0.70
5306520--5306576	27	2.1	27	80	12	71	82	1	15	0	0.75
5306519--5306565	16	3.1	15	79	8	51	85	2	12	0	0.70
5306527--5306573	22	2.2	20	88	7	67	82	0	17	0	0.66
5306526--5306565	7	5.4	7	85	11	53	85	0	15	0	0.61
5306525--5306576	26	2.0	25	89	10	79	82	0	17	0	0.66
5307629--5307664	18	2.0	18	89	10	56	77	8	13	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5308837--5308893	26	2.2	26	87	6	80	40	17	8	33	1.81
5309295--5309457	32	5.1	32	76	1	139	39	26	13	20	1.90
5309297--5309501	96	2.1	96	79	5	227	38	26	14	20	1.91
5309507--5309554	22	2.2	22	84	0	60	35	25	10	29	1.89
5310128--5310152	13	1.9	13	100	0	50	32	0	0	68	0.90
5314229--5314260	12	2.6	13	90	9	50	43	3	0	53	1.16
5315643--5315685	23	2.0	22	82	17	54	48	0	2	48	1.14
5316331--5316355	11	2.3	11	100	0	50	44	0	8	48	1.32
5316541--5316581	18	2.3	18	86	0	55	4	14	0	80	0.87
5316657--5316681	9	2.8	9	100	0	50	8	8	0	84	0.79
5323406--5323449	2	22.5	2	95	4	81	50	0	0	50	1.00
5331276--5331301	1	26.0	1	100	0	52	0	0	0	100	0.00
5334039--5334081	21	2.0	22	86	4	61	46	0	2	51	1.13
5334601--5334661	24	2.6	23	77	10	61	37	4	0	57	1.20
5334621--5334671	23	2.2	24	82	3	59	33	3	0	62	1.13
5334983--5335094	55	2.0	58	82	5	140	41	8	10	39	1.69
5334997--5335110	55	2.1	55	80	9	126	45	5	11	37	1.63
5342619--5342852	120	2.0	120	91	0	378	24	15	16	43	1.87
5345288--5345338	24	2.1	24	100	0	102	64	0	7	27	1.21
5345372--5345486	59	1.9	59	81	10	137	48	0	3	47	1.18
5348173--5348201	2	14.5	2	100	0	58	48	0	0	51	1.00
5349714--5349784	31	2.2	33	87	5	101	29	0	16	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5365923--5365953	15	2.1	15	100	0	62	22	19	19	38	1.93
5368082--5368129	15	3.2	15	77	8	53	31	0	4	64	1.12
5376004--5376420	169	2.4	168	79	7	414	36	20	18	24	1.95
5375917--5376443	86	6.2	85	74	7	300	36	21	18	23	1.95
5376361--5376495	61	2.2	61	80	7	148	38	20	17	23	1.93
5376799--5376857	19	3.1	19	81	15	68	33	27	20	18	1.96
5376817--5377085	121	2.2	121	84	5	355	33	21	18	26	1.96
5384863--5384921	23	2.5	23	78	10	66	30	6	1	61	1.32
5384867--5384915	22	2.2	22	85	7	64	26	6	2	65	1.27
5384953--5385006	21	2.5	22	77	16	60	75	7	1	14	1.09
5384944--5385003	16	4.0	14	76	20	59	75	8	1	15	1.12
5386390--5386452	32	2.0	32	83	0	81	33	9	17	39	1.82
5387127--5387168	18	2.3	18	80	11	50	35	2	9	52	1.47
5400136--5400319	18	10.5	17	71	17	103	57	2	0	39	1.17
5400136--5400319	33	5.3	34	71	18	130	57	2	0	39	1.17
5400160--5400304	41	3.7	40	80	8	165	57	2	0	40	1.15
5400141--5400297	15	10.5	15	72	16	105	56	3	0	39	1.20
5400184--5400326	8	18.6	7	70	15	63	58	1	0	39	1.12
5400233--5400319	23	3.8	23	82	5	106	58	1	0	40	1.05
5400136--5400331	15	12.9	15	69	22	92	56	2	0	40	1.17
5400136--5400297	74	2.1	78	83	10	203	56	3	0	39	1.19
5400385--5400435	16	3.2	15	83	8	57	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5400397--5400431	16	2.2	16	95	5	63	48	0	0	51	1.00
5400564--5400599	14	2.6	14	90	0	54	27	0	5	66	1.13
5408524--5408561	19	1.9	19	89	5	58	34	0	2	63	1.09
5410417--5410441	2	12.5	2	100	0	50	48	0	0	52	1.00
5412749--5412775	7	3.9	7	100	0	54	14	0	25	59	1.36
5424815--5424839	13	1.9	13	100	0	50	92	0	0	8	0.40
5425045--5425098	17	3.0	18	84	13	67	48	3	1	46	1.30
5425107--5425157	24	2.1	24	85	0	66	43	1	13	41	1.55
5425175--5425219	23	2.0	23	86	8	65	57	0	6	35	1.25
5425536--5425899	18	20.8	18	68	21	161	54	1	1	41	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130