genome.fa.s556.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  115  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22546523--22546563	19	2.2	19	95	0	73	78	0	12	9	0.98
22546508--22546580	34	2.1	34	85	5	94	78	0	9	12	0.98
22546508--22546545	8	4.8	8	83	9	51	84	0	5	10	0.77
22547835--22547896	21	3.0	20	86	6	79	38	6	17	37	1.76
22548339--22548519	42	4.4	42	80	7	158	23	11	16	49	1.77
22548379--22548491	41	2.8	41	86	5	149	20	14	16	48	1.80
22548411--22548643	124	1.9	126	79	7	269	24	12	15	47	1.81
22548616--22548704	42	2.1	43	89	6	137	23	14	19	42	1.88
22549148--22549199	21	2.5	21	90	6	79	50	0	0	50	1.00
22549148--22549199	22	2.5	22	93	6	90	50	0	0	50	1.00
22549172--22549228	30	1.9	30	85	0	78	52	1	0	45	1.11
22549721--22549775	19	2.8	18	76	12	56	14	0	9	76	1.02
22549720--22549776	10	5.6	11	80	14	61	15	0	8	75	1.04
22549789--22549821	14	2.4	14	90	10	50	84	0	3	12	0.72
22554443--22554474	6	5.7	6	96	3	50	0	9	0	90	0.45
22555772--22555938	29	6.1	27	69	16	83	47	1	1	49	1.16
22555877--22555936	29	2.1	27	87	6	84	48	1	0	50	1.11
22556714--22556749	3	12.0	3	93	0	63	30	0	2	66	1.06
22562077--22562102	1	26.0	1	100	0	52	0	0	0	100	0.00
22565546--22565607	31	2.0	32	84	9	83	46	0	3	50	1.17
22567740--22567933	104	1.9	103	84	8	259	36	12	9	42	1.75
22568341--22568391	17	2.9	17	82	2	57	47	3	1	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22575738--22575764	13	2.1	13	100	0	54	0	7	0	92	0.38
22576404--22576470	31	2.1	31	81	8	73	34	2	7	55	1.43
22586658--22586717	32	1.9	31	86	3	84	43	0	3	53	1.17
22594574--22594639	30	2.1	31	81	10	73	34	3	7	54	1.44
22607104--22607147	11	3.9	11	82	11	54	18	4	0	77	0.94
22614374--22614411	15	2.4	17	86	8	53	18	0	7	73	1.06
22615814--22615846	6	5.5	6	89	10	50	15	0	0	84	0.61
22619041--22619118	24	3.3	24	77	16	99	34	14	3	47	1.62
22619101--22619133	15	2.2	15	100	0	66	27	12	6	54	1.60
22619222--22619276	26	2.1	26	82	0	65	30	14	10	43	1.80
22619317--22619383	32	2.1	31	91	2	107	34	20	7	37	1.81
22624065--22624096	4	8.0	4	92	0	55	21	0	0	78	0.76
22627240--22627283	21	2.0	22	83	12	56	56	6	2	34	1.38
22627754--22627806	23	2.4	23	90	9	85	50	0	0	49	1.00
22632075--22632106	15	2.2	14	94	5	55	50	0	6	43	1.27
22632165--22632197	17	1.9	17	88	11	50	33	12	0	54	1.37
22633127--22633195	21	3.2	22	75	16	74	13	13	1	72	1.19
22637050--22637083	16	2.1	16	88	0	50	58	2	0	38	1.13
22637552--22637608	28	2.0	30	86	6	82	75	8	12	3	1.16
22642680--22642724	16	2.7	16	82	6	54	64	0	2	33	1.06
22642809--22642834	2	13.0	2	100	0	52	50	0	0	50	1.00
22644735--22644807	31	2.3	32	83	2	94	58	6	13	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22645032--22645106	30	2.6	30	79	10	84	37	4	4	54	1.38
22645148--22645235	30	3.0	30	76	5	90	54	6	4	34	1.47
22656015--22656052	19	2.0	19	89	0	58	42	2	2	52	1.29
22656506--22656548	22	2.0	22	90	0	68	46	2	0	51	1.13
22656561--22656621	29	2.1	29	96	0	113	22	18	3	55	1.56
22662302--22662352	19	2.7	19	85	14	70	47	0	0	52	1.00
22662305--22662352	18	2.6	19	83	12	64	45	0	0	54	0.99
22663212--22663244	16	2.1	16	94	0	57	51	3	3	42	1.32
22663249--22663333	22	4.1	21	69	26	65	55	0	0	44	0.99
22663260--22663352	22	5.0	18	77	19	93	56	0	0	43	0.99
22663261--22663355	15	6.3	15	71	19	56	57	0	0	42	0.98
22663261--22663375	38	3.0	38	83	10	119	56	0	0	41	1.11
22663300--22663358	15	4.1	14	78	10	66	55	0	0	44	0.99
22663327--22663385	23	2.5	23	80	5	64	52	3	1	42	1.28
22663260--22663390	38	3.5	38	80	10	108	54	1	0	42	1.14
22668935--22669183	90	2.8	89	90	4	384	36	16	11	35	1.86
22675988--22676038	22	2.3	20	78	18	57	41	0	3	54	1.19
22677228--22677258	8	3.8	8	95	4	53	48	0	0	51	1.00
22683087--22683112	5	5.2	5	100	0	52	38	0	0	61	0.96
22690942--22690974	16	2.0	17	94	5	59	51	18	0	30	1.46
22691860--22691907	24	2.0	24	100	0	96	29	4	4	62	1.32
22693725--22693763	14	2.9	14	84	3	53	38	7	17	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22693725--22693773	13	3.7	13	81	5	53	36	12	18	32	1.88
22697752--22698042	60	5.0	57	80	7	318	48	5	10	34	1.62
22697751--22698042	118	2.5	114	85	5	399	48	5	10	34	1.61
22702460--22702572	17	6.4	17	71	21	63	72	0	17	9	1.11
22702485--22702564	15	4.7	16	72	18	63	75	0	15	10	1.05
22703621--22703734	36	3.2	35	90	5	165	43	8	14	33	1.76
22703702--22703742	21	2.0	21	100	0	82	39	9	14	36	1.79
22703697--22703987	122	2.3	123	81	4	318	39	11	14	34	1.82
22703931--22704008	22	3.7	21	77	6	68	42	8	11	37	1.73
22703929--22704080	46	3.3	46	83	3	184	40	11	11	36	1.78
22704506--22704642	44	3.1	44	88	2	193	21	13	20	44	1.85
22704832--22704872	13	3.3	13	83	10	59	21	7	2	68	1.26
22706056--22706104	10	4.6	10	76	14	53	6	0	14	79	0.91
22706194--22706476	58	4.9	58	80	8	308	46	6	10	36	1.65
22706198--22706418	116	1.9	119	89	4	351	47	4	11	36	1.62
22708671--22708710	17	2.4	18	80	16	50	52	12	12	22	1.72
22714275--22714333	30	2.0	30	89	0	91	44	13	30	11	1.80
22716303--22716380	30	2.6	29	84	9	95	17	3	30	47	1.66
22716408--22716469	16	3.8	16	80	14	65	17	1	29	51	1.55
22716359--22716449	39	2.3	38	79	5	101	18	2	30	48	1.60
22716439--22716477	17	2.3	17	90	0	60	23	0	25	51	1.49
22716473--22716516	22	2.0	23	86	4	63	18	2	27	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22716431--22716569	24	5.8	24	70	15	90	18	2	27	51	1.57
22721049--22721138	33	2.8	31	78	13	103	65	3	1	30	1.16
22721066--22721138	29	2.7	27	80	15	80	67	1	1	30	1.08
22725840--22725904	18	3.6	18	75	10	53	24	30	10	33	1.90
22725826--22725887	3	20.7	3	83	0	61	24	35	6	33	1.81
22729954--22730100	61	2.4	61	81	4	172	32	12	19	34	1.90
22733592--22733633	21	2.0	22	90	4	68	73	2	4	19	1.12
22733983--22734053	35	2.0	35	86	0	97	36	19	12	30	1.89
22759353--22759741	197	2.0	198	89	1	593	25	19	11	43	1.84
22763447--22763479	16	2.1	16	88	11	50	48	6	0	45	1.27
22768739--22768782	16	2.7	17	79	10	56	29	29	6	34	1.83
22778715--22778782	33	2.0	34	85	2	93	47	2	0	50	1.16
22779103--22779132	13	2.4	12	89	10	51	50	0	3	46	1.18
22779257--22779296	21	1.9	21	94	0	71	57	2	0	40	1.12
22779252--22779297	10	4.5	10	86	5	65	60	2	0	36	1.09
22780220--22780244	10	2.5	10	100	0	50	24	0	0	76	0.80
22786404--22786434	7	4.3	7	95	4	53	25	0	0	74	0.82
22799773--22799802	5	6.0	5	100	0	60	40	0	0	60	0.97
22800161--22800235	4	16.5	4	73	26	53	64	2	0	33	1.08
22800159--22800206	15	2.8	18	70	23	50	62	2	0	35	1.07
22800166--22800247	15	5.7	13	82	17	92	60	4	0	34	1.18
22800167--22800247	29	2.8	29	96	3	146	61	4	0	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22800308--22800365	27	2.2	27	87	3	82	56	3	5	34	1.38
22800352--22800382	11	2.8	11	95	0	53	51	0	3	45	1.17
22800308--22800380	26	2.8	26	82	2	74	56	2	5	35	1.37
22802324--22802375	13	4.1	12	77	18	52	30	1	0	67	1.02
22802320--22802488	17	10.9	16	67	17	65	29	4	1	63	1.24
22802325--22802409	31	2.8	30	79	8	84	31	5	1	61	1.28
22802328--22802414	14	6.4	14	73	11	65	31	5	1	62	1.26
22802396--22802486	21	4.4	21	82	6	105	28	4	2	64	1.24
22802396--22802486	42	2.2	41	88	2	128	28	4	2	64	1.24
22802488--22802512	13	1.9	13	100	0	50	0	12	0	88	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130