genome.fa.s556.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  60  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12700241--12700280	13	3.1	13	79	13	55	82	2	12	2	0.87
12703566--12703753	44	4.2	44	76	6	137	39	14	13	31	1.85
12703677--12704234	47	11.7	48	75	11	429	39	18	12	29	1.88
12703623--12704028	90	4.4	91	78	11	339	39	18	13	28	1.89
12703633--12703790	43	3.6	43	72	13	140	39	16	14	29	1.88
12703767--12704236	191	2.4	191	81	4	543	39	18	12	29	1.87
12703767--12704214	146	3.1	146	79	6	441	39	19	12	28	1.88
12705062--12705091	13	2.3	13	94	0	51	10	3	0	86	0.67
12717801--12717829	5	5.8	5	100	0	58	82	0	0	17	0.66
12721249--12721301	25	2.2	25	93	3	90	54	0	5	39	1.24
12726246--12726278	15	2.2	15	100	0	66	33	27	0	39	1.57
12729725--12729758	10	3.4	10	91	0	50	5	23	0	70	1.09
12732571--12732619	23	2.1	23	92	0	80	26	16	6	51	1.68
12732987--12733013	2	13.5	2	100	0	54	48	0	0	51	1.00
12737344--12737532	93	2.0	96	81	8	226	42	4	9	43	1.58
12737489--12737595	49	2.2	50	88	3	155	52	1	4	41	1.33
12737895--12737919	12	2.1	12	100	0	50	24	16	0	60	1.36
12741917--12741966	18	2.8	17	84	9	55	18	2	2	78	0.95
12741935--12742023	26	3.6	25	71	22	62	20	2	1	76	0.96
12741913--12741978	25	2.6	25	79	11	73	18	1	1	78	0.90
12741950--12742012	13	4.4	14	82	15	67	19	3	1	76	1.01
12742168--12742221	23	2.4	22	84	6	72	20	0	1	77	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12742128--12742218	9	9.0	10	72	15	64	20	2	3	73	1.08
12742723--12742766	21	2.0	22	91	4	72	54	0	45	0	0.99
12743014--12743106	4	22.8	4	73	19	52	23	1	3	72	1.06
12743052--12743108	20	2.9	20	84	7	73	19	3	0	77	0.92
12743005--12743106	45	2.3	46	73	11	106	23	0	2	72	1.04
12743125--12743578	59	7.7	59	82	10	502	44	7	12	35	1.71
12743125--12743578	118	3.8	117	86	6	553	44	7	12	35	1.71
12755027--12755326	41	7.6	39	82	10	301	25	16	19	38	1.92
12755179--12755243	33	2.0	32	87	3	94	29	13	15	41	1.86
12755139--12755284	73	2.0	73	89	2	222	25	17	19	37	1.93
12755098--12755326	114	2.0	114	88	1	343	24	17	19	38	1.93
12755216--12755349	41	3.3	41	89	0	187	26	17	20	35	1.95
12755369--12755399	5	6.0	5	92	7	53	80	19	0	0	0.71
12755369--12755400	11	3.0	11	95	4	57	81	18	0	0	0.70
12755406--12755597	43	4.4	44	91	3	282	21	14	22	40	1.90
12755406--12755597	87	2.2	88	88	5	282	21	14	22	40	1.90
12755747--12755851	6	16.8	6	72	18	65	18	2	2	76	1.04
12755747--12755851	19	5.6	18	73	16	65	18	2	2	76	1.04
12755747--12755851	31	3.4	31	73	10	88	18	2	2	76	1.04
12755747--12755855	37	3.1	34	75	15	91	18	2	2	76	1.03
12755821--12755859	15	2.6	16	88	8	55	25	2	2	69	1.14
12755902--12755965	22	3.0	22	82	15	73	34	4	3	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12755906--12755949	20	2.2	20	92	8	72	34	4	4	56	1.40
12756835--12756933	9	11.9	8	75	21	71	19	2	0	78	0.84
12756833--12756938	11	9.0	11	77	12	86	18	2	0	78	0.88
12756873--12756932	4	15.8	4	83	13	74	23	0	0	76	0.78
12756850--12756931	26	3.1	26	84	10	103	21	1	0	76	0.85
12756846--12756932	15	5.7	15	77	16	81	20	1	0	78	0.82
12756846--12756933	12	7.4	11	76	17	79	20	1	0	78	0.82
12756969--12757172	62	3.4	60	90	3	338	42	6	13	37	1.69
12757175--12757299	58	2.1	58	89	7	191	40	10	13	36	1.79
12757220--12757300	27	2.9	27	68	23	67	43	7	13	35	1.72
12762589--12762640	13	4.1	12	80	11	59	75	1	3	19	1.06
12762589--12762640	26	2.0	25	85	10	70	75	1	3	19	1.06
12763828--12763865	18	2.1	18	85	9	51	47	0	13	39	1.42
12765968--12766022	23	2.3	24	81	12	69	80	12	3	3	0.98
12766739--12766785	20	2.4	19	75	3	58	19	55	23	2	1.54
12766835--12766879	13	3.4	13	81	6	54	35	37	20	6	1.79
12767692--12767741	21	2.3	23	77	19	63	60	0	0	40	0.97
12768426--12768450	13	1.9	13	100	0	50	80	0	12	8	0.92
12773990--12774255	109	2.5	108	83	3	322	22	18	11	46	1.81
12774532--12774666	45	3.0	45	86	2	182	20	12	16	51	1.76
12774352--12774795	224	2.0	225	86	1	631	20	15	14	48	1.80
12775188--12775222	17	2.0	18	88	5	54	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12776199--12776246	18	2.7	18	78	12	53	22	0	4	72	1.01
12776356--12776410	3	18.3	3	100	0	110	67	0	0	32	0.91
12776659--12776711	22	2.3	23	80	3	63	43	28	1	26	1.65
12776705--12776743	20	2.0	20	90	10	62	51	20	0	28	1.48
12776733--12776825	30	3.2	30	76	10	86	47	29	1	22	1.58
12776745--12776853	29	3.7	29	74	12	87	47	29	0	22	1.57
12777935--12777997	26	2.3	27	78	10	67	31	4	3	60	1.33
12777984--12778055	32	2.4	31	80	13	87	62	1	1	34	1.13
12780976--12781070	46	2.1	46	84	4	120	56	3	13	26	1.52
12781714--12781761	25	2.0	24	91	4	78	75	6	6	12	1.19
12782259--12782314	29	2.0	28	89	3	85	39	1	3	55	1.28
12782646--12782677	2	16.0	2	100	0	64	50	0	0	50	1.00
12783691--12783762	29	2.5	31	80	13	91	43	0	2	54	1.15
12789107--12789131	2	12.5	2	100	0	50	52	0	0	48	1.00
12790819--12790864	23	2.0	23	82	0	56	50	2	0	47	1.13
12793516--12793590	31	2.4	32	82	10	93	69	0	6	24	1.12
12797138--12797194	25	2.4	24	80	11	64	57	5	3	33	1.38
12797516--12797554	21	1.9	21	94	5	71	61	0	10	28	1.28
12798427--12798564	73	1.9	73	87	0	204	36	11	19	32	1.88
12798644--12798766	54	2.3	54	86	8	162	30	12	8	48	1.69
12798641--12798882	54	4.5	52	77	11	150	31	13	9	46	1.74
12799479--12799504	12	2.2	12	100	0	52	50	15	11	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12800572--12801025	128	3.6	127	78	5	397	42	13	5	38	1.66
12804908--12804948	21	2.0	21	85	9	57	73	2	0	24	0.96
12807229--12807408	43	4.2	42	82	5	209	28	16	16	38	1.90
12807930--12808034	46	2.3	46	86	1	149	31	7	9	51	1.62
12808064--12808104	11	3.5	11	87	9	55	90	0	7	2	0.54
12808065--12808095	16	1.9	16	100	0	62	90	0	6	3	0.55
12809966--12810015	21	2.4	20	78	15	57	40	0	0	60	0.97
12810039--12810585	213	2.6	208	89	6	797	32	15	8	42	1.78
12810039--12810646	213	2.9	206	83	9	732	31	14	8	45	1.75
12811712--12811750	16	2.4	16	87	8	53	2	0	15	82	0.79
12811922--12812860	47	19.9	47	93	3	1493	33	26	13	25	1.94
12813629--12813656	12	2.3	12	100	0	56	0	7	0	92	0.37
12821011--12821052	21	2.1	19	91	8	66	50	0	2	47	1.14
12822630--12822682	22	2.4	23	84	9	74	50	0	7	41	1.30
12822432--12822863	226	1.9	225	82	7	545	35	12	8	43	1.74
12822831--12822881	26	1.9	27	84	4	68	29	1	3	64	1.22
12823053--12823091	13	3.0	13	82	14	53	0	20	46	33	1.51
12824031--12824080	20	2.5	20	81	12	59	16	6	4	74	1.17
12824269--12824320	26	2.0	27	84	3	70	28	3	0	67	1.08
12825588--12825617	2	15.0	2	100	0	60	50	0	0	50	1.00
12825959--12826052	49	1.9	49	88	0	143	43	7	5	43	1.55
12826182--12826213	14	2.3	14	94	0	55	53	0	9	37	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12829748--12829805	19	3.3	18	70	20	52	36	8	1	53	1.42
12829865--12829953	42	2.1	43	84	15	116	58	0	1	40	1.05
12829865--12829953	22	4.2	21	72	21	71	58	0	1	40	1.05
12829903--12829942	19	2.0	20	90	4	64	60	0	0	40	0.97
12831430--12831529	52	1.9	52	85	4	139	42	6	24	28	1.78
12832063--12832114	25	2.1	25	88	0	77	42	9	28	19	1.82
12835146--12835970	144	5.8	144	92	4	1383	25	23	17	32	1.96
12835206--12835714	72	7.1	72	59	17	178	26	21	18	33	1.96
12835651--12835910	132	2.0	132	95	1	468	26	25	18	30	1.98
12841667--12841723	29	2.0	29	96	0	105	33	12	10	43	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130