genome.fa.s556.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  93  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18266570--18266618	13	3.8	13	81	10	64	46	16	18	18	1.84
18266561--18266621	26	2.3	26	94	0	104	49	13	19	18	1.79
18269916--18269960	3	15.0	3	81	9	56	35	0	26	37	1.57
18272691--18272716	2	13.0	2	100	0	52	50	0	0	50	1.00
18273315--18273386	30	2.4	30	83	4	83	44	0	0	55	0.99
18273322--18273371	16	3.0	16	85	5	55	38	0	0	62	0.96
18273323--18273374	14	3.6	14	75	10	50	42	0	0	57	0.98
18273359--18273409	21	2.5	21	96	3	95	50	0	0	49	1.00
18276442--18276504	27	2.3	26	79	12	74	28	0	3	68	1.05
18276447--18276498	26	2.1	24	82	13	61	26	0	1	71	0.97
18276712--18276745	13	2.6	13	86	13	52	70	0	2	26	1.01
18276748--18276796	3	16.3	3	95	0	89	65	0	2	32	1.04
18276966--18277021	29	1.9	29	82	13	71	46	26	5	21	1.73
18276985--18277227	30	8.2	29	72	15	160	44	28	2	23	1.66
18277071--18277249	30	6.1	30	80	7	179	45	32	1	20	1.59
18277071--18277210	14	9.6	14	70	15	79	47	31	1	20	1.59
18281780--18281855	39	1.9	40	81	7	93	23	22	15	38	1.93
18284732--18284766	18	1.9	18	94	0	61	82	8	8	0	0.83
18286600--18286817	106	2.1	105	83	6	273	33	12	15	38	1.85
18287019--18287061	22	2.0	22	90	0	68	27	20	18	32	1.96
18286806--18287047	129	1.9	130	80	4	292	34	16	14	33	1.90
18287165--18287229	22	3.0	22	77	8	78	32	16	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18287227--18287332	37	2.8	38	70	8	92	19	16	14	50	1.79
18287353--18287418	22	3.0	22	77	2	71	27	24	16	31	1.96
18287483--18287562	37	2.2	36	86	2	106	17	21	15	46	1.84
18287510--18287601	36	2.5	37	82	5	105	15	21	15	47	1.81
18289040--18289102	27	2.3	26	79	12	74	28	0	3	68	1.05
18289045--18289096	26	2.1	24	82	13	61	26	0	1	71	0.97
18289136--18289161	4	6.5	4	100	0	52	76	0	0	23	0.78
18289323--18289371	3	16.3	3	80	16	57	67	2	0	30	1.02
18289580--18289720	15	9.6	15	75	9	112	46	24	1	27	1.61
18289569--18289647	29	2.7	29	76	9	88	44	26	2	26	1.67
18289562--18289692	44	3.0	44	90	2	192	45	22	3	29	1.67
18289681--18289750	22	3.2	22	67	15	54	47	31	1	20	1.59
18289696--18289838	30	4.9	30	67	13	91	45	33	2	18	1.62
18289760--18289804	21	2.1	21	84	8	56	46	37	2	13	1.55
18290164--18290238	38	2.0	38	97	2	143	40	21	5	33	1.76
18290987--18291028	20	2.1	20	90	0	66	57	0	4	38	1.20
18293613--18293695	36	2.3	36	79	6	96	60	3	4	31	1.35
18296132--18296198	26	2.5	28	80	9	86	14	28	25	31	1.95
18296107--18296197	26	3.4	27	73	13	82	16	28	25	29	1.97
18296232--18296325	3	31.7	3	75	10	86	30	4	1	63	1.20
18296225--18296305	22	4.0	21	75	13	62	30	6	2	60	1.34
18296233--18296307	36	2.1	36	87	5	107	33	5	1	60	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18296264--18296302	5	7.2	5	91	5	51	35	2	0	61	1.10
18296260--18296325	28	2.4	28	85	7	82	31	1	0	66	1.01
18296255--18296325	22	3.3	22	77	15	51	30	2	0	66	1.06
18307421--18307774	119	3.0	119	77	4	347	19	21	13	45	1.85
18309176--18309270	39	2.5	37	79	15	97	15	5	2	76	1.05
18309333--18309367	14	2.6	14	86	4	54	77	0	0	22	0.78
18309360--18309401	18	2.3	19	87	4	59	64	9	0	26	1.24
18309357--18309408	18	2.9	17	78	16	52	59	7	0	32	1.26
18312101--18312135	16	2.2	16	89	0	52	60	22	8	8	1.54
18312898--18313091	101	1.9	101	94	0	343	32	12	10	44	1.76
18322541--18322605	32	2.0	32	96	0	121	47	4	12	35	1.62
18323057--18323155	44	2.2	44	92	0	162	32	14	6	47	1.68
18323087--18323155	22	3.1	23	72	16	72	31	13	7	47	1.69
18323072--18323138	19	3.2	19	67	28	55	29	11	7	50	1.66
18323078--18323147	21	3.2	21	75	15	79	31	11	7	50	1.65
18323057--18323180	44	2.9	44	85	4	128	30	12	7	49	1.68
18323534--18323575	18	2.3	18	80	8	50	42	4	0	52	1.22
18323895--18323970	26	3.0	24	72	14	71	48	0	1	50	1.09
18323896--18323987	6	14.5	6	71	18	53	51	0	1	47	1.07
18323897--18323975	14	5.9	14	73	20	71	49	0	1	49	1.09
18323913--18323991	24	3.3	23	78	15	79	53	0	1	45	1.08
18323928--18324000	17	4.5	16	74	19	71	54	1	0	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18324105--18324185	31	2.6	31	86	0	108	43	7	8	40	1.63
18325430--18325474	6	7.5	6	97	0	81	33	13	33	20	1.91
18327007--18327221	110	1.9	111	88	0	324	40	13	13	33	1.83
18332367--18332421	23	2.4	24	81	6	69	21	3	1	72	1.09
18332839--18332878	17	2.3	19	83	12	50	57	5	0	37	1.21
18332880--18332928	25	2.0	25	88	8	73	79	2	6	12	0.99
18332880--18332928	19	2.5	20	84	12	59	79	2	6	12	0.99
18333239--18333276	19	2.1	19	85	5	51	47	10	7	34	1.67
18334799--18334824	13	2.0	13	100	0	52	76	0	0	23	0.78
18344584--18344632	16	2.9	17	77	17	57	32	4	8	55	1.48
18344695--18344770	30	2.6	30	75	6	75	36	5	2	55	1.37
18344714--18344759	15	3.1	15	81	12	58	41	6	4	47	1.49
18346179--18346213	11	3.3	11	92	8	63	51	0	11	37	1.38
18346179--18346222	21	2.0	22	91	4	72	47	2	11	38	1.52
18346182--18346213	10	3.1	10	91	8	55	53	0	9	37	1.34
18348747--18348847	52	1.9	52	84	4	132	24	16	18	39	1.91
18349583--18349648	23	2.7	25	81	13	75	34	0	3	62	1.11
18360816--18360848	15	2.2	15	94	0	57	15	0	3	81	0.80
18360798--18360884	39	2.2	38	82	9	104	21	2	4	71	1.16
18371060--18371724	36	18.0	36	73	12	342	26	15	7	49	1.72
18371270--18371422	83	1.8	83	94	0	270	24	18	8	49	1.75
18371145--18371724	109	5.2	113	73	13	286	25	16	7	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18372288--18372363	31	2.4	32	84	2	91	40	21	9	28	1.84
18378910--18378948	3	12.7	3	83	5	51	38	25	0	35	1.56
18381476--18381561	45	1.9	45	80	4	102	22	18	19	39	1.92
18381814--18381855	16	2.7	16	82	10	52	35	2	0	61	1.09
18383659--18383699	19	2.1	20	86	4	57	31	0	9	58	1.31
18383658--18383706	20	2.4	20	80	10	55	32	0	8	59	1.27
18384765--18384805	19	2.2	19	100	0	82	39	21	7	31	1.81
18386271--18386317	24	2.0	24	86	0	67	27	29	21	21	1.98
18389702--18389740	3	13.0	3	94	0	69	66	2	0	30	1.05
18391447--18391487	16	2.5	17	84	4	57	51	21	2	24	1.60
18391549--18391589	16	2.6	16	84	0	55	48	31	0	19	1.49
18397918--18397958	3	13.7	3	100	0	82	68	0	0	31	0.90
18403182--18403225	11	3.8	11	81	6	52	27	2	2	68	1.14
18404783--18404839	19	3.1	18	82	7	62	56	0	1	42	1.10
18405025--18405054	2	15.0	2	100	0	60	50	0	0	50	1.00
18405846--18405880	14	2.5	14	90	9	54	34	5	2	57	1.37
18407237--18407468	126	1.8	126	80	9	274	50	9	8	32	1.64
18415175--18415227	17	3.4	17	75	15	51	24	3	0	71	1.02
18416343--18416376	17	1.9	18	94	5	61	17	0	2	79	0.86
18416819--18417260	50	8.9	49	73	12	233	38	17	12	31	1.87
18417002--18417087	42	2.0	42	82	4	102	34	18	10	36	1.85
18417047--18417259	53	4.0	53	79	8	209	40	15	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18417830--18417895	9	6.8	10	76	11	66	18	1	3	77	0.98
18417863--18417895	8	3.7	9	88	12	50	21	0	0	78	0.75
18417830--18417895	30	2.3	31	84	10	86	18	1	3	77	0.98
18418341--18418566	50	4.6	49	81	2	220	36	20	14	29	1.92
18418585--18418746	52	3.1	52	83	7	195	42	14	11	31	1.81
18418569--18418781	53	4.0	54	78	8	186	41	15	11	31	1.82
18419348--18419412	10	6.5	10	74	10	53	21	1	3	73	1.05
18419851--18420076	50	4.6	49	76	2	211	35	20	14	29	1.92
18420095--18420256	52	3.1	51	80	8	182	42	14	10	32	1.79
18420079--18420257	53	3.4	52	78	10	184	42	13	9	34	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130