genome.fa.s556.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  43  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10223956--10224055	8	11.8	8	68	21	53	40	3	5	52	1.39
10223959--10224056	5	18.4	5	73	14	72	40	3	5	51	1.40
10224016--10224064	23	2.1	24	84	3	64	42	2	8	46	1.45
10224639--10224678	21	1.9	21	89	0	62	25	5	15	55	1.60
10225061--10225100	19	2.2	18	86	4	53	15	5	2	77	1.04
10225062--10225143	18	4.5	17	76	18	60	19	3	2	74	1.08
10225114--10225162	22	2.2	23	81	3	55	22	4	2	71	1.13
10225114--10225157	23	1.9	23	85	0	61	22	2	2	72	1.07
10227207--10227282	28	2.7	27	82	12	73	22	6	2	68	1.25
10227595--10227626	16	1.9	17	93	6	57	71	12	12	3	1.25
10228002--10228086	42	2.0	42	90	0	134	28	14	20	37	1.91
10228453--10228507	23	2.5	22	79	5	74	50	5	1	41	1.36
10231663--10231693	15	2.1	15	100	0	62	38	0	35	25	1.56
10232018--10232090	37	2.0	37	86	0	101	31	12	27	28	1.93
10233357--10233404	16	2.9	15	79	14	51	45	0	2	52	1.12
10233453--10233598	61	2.4	61	77	7	145	39	4	17	38	1.71
10233555--10233646	36	2.6	36	77	6	98	47	6	13	32	1.68
10235522--10235557	2	18.0	2	88	0	54	47	2	0	50	1.15
10236414--10236473	26	2.4	25	81	13	61	40	3	5	51	1.40
10237904--10237977	21	3.5	21	84	0	85	32	13	18	35	1.90
10239640--10239678	18	2.2	18	85	0	51	58	0	2	38	1.12
10239711--10239768	21	2.7	22	79	12	68	67	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10239792--10239867	24	3.1	23	83	11	89	44	0	0	55	0.99
10248670--10248701	13	2.4	14	85	15	50	46	0	3	50	1.17
10249969--10250014	17	2.7	17	82	0	65	52	0	2	45	1.13
10252431--10253150	22	33.4	22	64	10	117	48	4	9	37	1.56
10252404--10252500	44	2.3	42	82	8	115	46	4	11	38	1.59
10252765--10252900	65	2.1	66	82	5	161	50	5	8	35	1.56
10253054--10253093	19	2.1	19	95	0	71	47	2	7	42	1.45
10253075--10253161	44	2.0	44	83	0	111	45	5	9	39	1.60
10253058--10253161	22	4.9	22	76	3	88	46	5	8	39	1.59
10253273--10253394	22	5.6	22	78	6	106	45	8	8	37	1.64
10255919--10256006	45	2.0	45	100	0	176	31	12	15	39	1.85
10257894--10257926	17	1.9	17	100	0	66	72	0	0	27	0.85
10259403--10259444	22	1.9	22	85	9	59	40	7	11	40	1.69
10259473--10259530	22	2.6	22	81	10	82	53	8	8	29	1.61
10259473--10259587	22	5.2	22	74	8	72	47	7	8	35	1.63
10259627--10259766	22	6.4	21	75	9	102	47	7	7	37	1.60
10259689--10259788	44	2.3	44	85	0	137	46	9	8	37	1.65
10259708--10259843	22	6.3	22	74	6	125	44	5	9	39	1.61
10259618--10259833	66	3.3	62	76	13	177	45	7	8	37	1.63
10259689--10259805	44	2.7	44	83	0	126	46	7	8	37	1.63
10259826--10259896	22	3.2	22	77	0	79	46	9	7	36	1.64
10260209--10260271	22	2.9	22	92	4	101	49	9	6	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10260275--10260330	21	2.7	20	72	10	51	46	12	7	33	1.69
10260320--10260420	48	2.2	44	83	15	116	51	8	1	37	1.45
10261377--10261412	17	2.1	17	90	10	56	75	0	0	25	0.81
10270943--10270990	21	2.2	21	85	10	62	50	4	10	35	1.56
10270927--10270984	20	3.1	18	77	20	64	46	5	10	37	1.60
10272342--10272381	21	2.0	20	90	5	62	42	12	12	32	1.80
10274860--10274899	20	2.0	20	90	0	62	45	5	37	12	1.64
10275018--10275052	15	2.3	15	95	0	61	14	22	11	51	1.74
10281220--10281261	15	2.8	15	85	0	57	19	26	11	42	1.85
10281245--10281300	30	1.9	29	82	7	69	19	19	10	50	1.77
10282288--10282313	13	2.0	13	100	0	52	30	23	7	38	1.83
10291197--10291272	34	2.2	34	83	0	89	39	14	15	30	1.88
10295372--10295457	33	2.7	33	82	7	106	31	5	9	53	1.56
10295580--10295614	19	1.9	18	88	11	54	57	11	2	28	1.48
10298269--10298318	23	2.2	23	89	3	75	46	22	4	28	1.70
10298582--10298645	29	2.2	28	81	8	74	48	4	6	40	1.49
10305653--10305985	174	1.9	173	90	3	490	34	11	14	39	1.81
10307051--10307100	24	2.1	24	96	0	91	30	22	8	40	1.82
10316893--10316952	25	2.4	25	85	0	84	18	23	21	36	1.95
10320637--10320680	22	2.0	22	95	0	79	31	11	13	43	1.80
10329105--10329163	20	3.1	19	75	15	59	61	0	1	37	1.07
10343215--10343502	145	2.0	145	93	0	486	27	16	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10345569--10345750	90	2.0	91	88	5	269	46	9	14	29	1.77
10347637--10347716	40	2.0	40	95	0	142	27	26	18	27	1.98
10352569--10352668	50	2.0	50	86	0	137	40	11	15	34	1.82
10370198--10370232	2	17.5	2	100	0	70	48	0	0	51	1.00
10377400--10377481	41	2.0	41	92	0	137	41	6	8	43	1.60
10380884--10380930	3	15.7	3	100	0	94	31	0	0	68	0.90
10380934--10380989	18	3.2	17	81	16	69	3	10	0	85	0.71
10380938--10380991	13	4.1	14	79	11	53	3	9	0	87	0.67
10380934--10381002	36	1.9	36	82	8	88	4	10	2	82	0.91
10381266--10381305	21	1.9	21	84	0	53	77	17	0	5	0.94
10382809--10382855	3	15.7	3	100	0	94	68	0	0	31	0.90
10383072--10383106	17	2.1	17	89	5	54	45	0	0	54	0.99
10392364--10392455	37	2.6	34	72	5	85	33	7	14	44	1.73
10396538--10396609	34	2.1	34	92	0	117	43	5	12	38	1.66
10396880--10397144	133	2.0	133	90	0	415	33	7	18	41	1.78
10400580--10400617	5	7.8	5	86	13	53	86	0	13	0	0.56
10400580--10400618	20	2.0	20	100	0	78	87	0	12	0	0.55
10400580--10400620	14	3.2	13	83	10	50	87	0	12	0	0.53
10400623--10400648	3	8.7	3	100	0	52	69	0	0	30	0.89
10400813--10400894	42	1.9	42	82	7	103	40	9	12	37	1.76
10401152--10401507	150	2.4	150	80	3	378	39	15	11	33	1.83
10401041--10401507	50	9.4	50	75	8	308	39	16	10	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10401259--10401549	100	2.9	99	78	7	311	42	15	11	30	1.82
10402330--10402354	11	2.3	11	100	0	50	36	0	0	64	0.94
10404735--10404770	18	2.0	18	94	0	63	58	0	11	30	1.33
10409718--10409752	15	2.3	15	95	0	61	85	5	2	5	0.81
10412202--10412237	17	2.1	17	89	5	54	8	0	8	83	0.82
10412437--10412540	38	2.7	38	72	5	102	52	11	18	17	1.73
10412548--10412648	51	2.0	50	96	3	186	52	17	16	12	1.75
10412617--10412720	40	2.7	37	82	10	127	60	16	10	12	1.58
10412655--10412738	38	2.2	37	80	2	96	57	17	11	13	1.65
10412763--10412854	37	2.5	37	89	0	130	48	11	22	16	1.78
10412880--10412969	22	4.1	22	73	9	69	30	14	24	31	1.95
10413035--10413092	22	2.6	22	83	0	71	29	17	22	31	1.96
10413196--10413266	37	1.9	37	88	0	106	49	18	16	15	1.80
10413282--10413362	22	3.7	22	80	6	83	32	12	22	33	1.91
10413433--10413477	22	2.0	22	95	0	81	33	17	20	28	1.95
10413941--10413990	26	1.9	26	84	8	66	26	20	16	38	1.92
10413940--10413996	26	2.2	26	78	6	62	29	17	14	38	1.89
10414005--10414279	136	2.0	136	91	1	444	31	11	18	37	1.87
10415624--10415669	8	5.6	8	80	14	58	8	4	2	84	0.83
10415624--10415670	16	2.9	16	87	6	67	8	4	2	85	0.81
10415624--10415669	17	2.8	16	87	6	65	8	4	2	84	0.83
10416245--10416291	20	2.3	21	85	3	60	2	6	4	87	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10416245--10416298	13	4.2	13	76	9	56	1	5	5	87	0.74
10420881--10420919	16	2.4	16	83	12	53	23	0	25	51	1.49
10420921--10421107	37	5.1	37	68	16	93	18	0	29	50	1.51
10420928--10421016	21	4.1	22	77	8	85	16	1	28	53	1.50
10421000--10421256	30	8.6	30	79	9	256	19	0	29	50	1.53
10421037--10421092	16	3.6	16	80	9	80	21	0	32	46	1.52
10421000--10421256	119	2.2	120	85	4	340	19	0	29	50	1.53
10421006--10421259	89	2.8	89	83	4	305	20	0	29	49	1.54
10421156--10421244	16	5.8	16	72	15	71	22	0	28	49	1.50
10421223--10421307	21	4.2	22	67	28	71	18	0	28	52	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130