genome.fa.s556.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  61  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12857646--12857747	54	1.9	54	84	7	138	46	4	6	42	1.52
12862460--12862515	29	1.9	29	82	7	69	21	14	0	64	1.29
12867997--12868052	14	3.7	14	73	17	58	44	0	0	55	0.99
12868002--12868060	16	3.5	18	68	17	63	38	0	0	61	0.96
12868240--12868288	2	25.0	2	79	4	55	44	2	6	46	1.39
12872211--12872265	27	2.0	27	92	0	92	23	12	16	47	1.81
12872618--12872659	20	2.1	20	86	8	59	16	4	0	78	0.91
12880477--12880504	9	3.1	9	100	0	56	21	0	35	42	1.53
12890982--12891045	31	2.1	31	100	0	128	31	20	15	32	1.94
12891978--12892078	41	2.5	41	83	3	132	33	19	11	34	1.89
12892215--12892265	14	3.8	14	73	19	54	17	23	15	43	1.88
12892216--12892278	26	2.4	26	100	0	126	19	23	14	42	1.87
12892253--12892295	18	2.4	18	92	0	68	23	23	13	39	1.90
12892646--12893563	50	17.6	50	73	14	289	35	12	13	37	1.84
12893012--12893181	58	3.0	58	80	6	186	37	10	14	38	1.80
12892782--12893550	317	2.4	316	79	8	777	36	13	13	36	1.84
12898951--12898997	17	2.7	18	83	3	60	29	2	2	65	1.15
12900646--12900691	17	2.6	17	83	10	58	50	0	2	47	1.13
12900646--12900691	18	2.6	18	86	3	67	50	0	2	47	1.13
12900646--12900698	18	3.0	17	78	8	52	54	1	1	41	1.22
12900685--12900764	28	2.8	28	76	5	79	65	8	1	25	1.29
12900777--12900841	21	3.2	21	82	4	71	50	7	1	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12900896--12900935	18	2.2	18	86	0	53	42	2	2	52	1.28
12900914--12900951	20	1.9	20	94	0	67	39	0	5	55	1.23
12901128--12901165	20	1.9	20	88	0	58	44	0	2	52	1.14
12902550--12902580	14	2.2	14	94	0	53	54	3	0	41	1.16
12902673--12902775	32	3.2	32	75	5	102	45	4	4	44	1.46
12903021--12903091	30	2.3	30	83	13	83	43	0	7	49	1.29
12903918--12903967	25	2.0	25	84	0	64	44	0	0	56	0.99
12903993--12904056	26	2.3	29	79	17	82	43	4	1	50	1.32
12904526--12904574	22	2.5	20	80	16	57	51	4	0	44	1.20
12905277--12905346	35	2.0	35	100	0	140	51	0	11	37	1.38
12907398--12907450	23	2.2	24	80	3	63	43	15	5	35	1.70
12913619--12913676	21	2.8	19	74	25	55	50	0	0	50	1.00
12915071--12915138	11	5.7	11	77	17	50	33	2	1	61	1.20
12915087--12915135	27	1.9	24	84	12	62	32	4	0	63	1.13
12915071--12915143	37	1.9	39	81	10	89	34	4	1	60	1.24
12915584--12915610	14	1.9	14	100	0	54	0	7	0	92	0.38
12918012--12918082	31	2.2	32	82	5	90	50	4	8	36	1.52
12928482--12928531	13	3.9	13	94	5	93	44	16	8	32	1.76
12928480--12928533	25	2.2	25	100	0	108	40	16	9	33	1.80
12929708--12930047	145	2.4	144	83	0	437	40	11	15	32	1.84
12929708--12930087	145	2.6	144	79	5	417	40	11	16	31	1.84
12930600--12930705	37	2.9	37	82	1	115	34	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12930730--12930874	37	3.9	37	84	4	159	35	15	15	33	1.89
12943357--12943810	240	1.9	240	82	6	567	42	12	7	37	1.70
12945968--12946346	142	2.6	145	79	2	442	42	11	14	32	1.80
12949779--12949932	77	2.0	77	84	0	200	30	10	11	47	1.73
12949883--12949956	28	2.6	28	80	4	78	28	5	12	54	1.59
12951064--12951097	17	2.0	17	94	0	59	26	8	0	64	1.22
12956508--12956551	22	2.0	22	95	0	79	43	13	11	31	1.80
12964040--12964081	21	2.0	22	85	4	59	35	7	4	52	1.50
12964399--12964453	25	2.2	24	79	17	60	69	1	1	27	1.09
12974354--12974396	22	2.0	22	95	0	77	53	11	6	27	1.63
12975351--12975396	20	2.3	20	81	3	58	43	2	4	50	1.34
12975480--12975536	25	2.3	26	84	6	82	47	0	3	49	1.18
12975519--12975595	19	4.2	19	76	20	74	50	1	0	48	1.09
12975519--12975588	18	3.9	18	77	17	67	51	1	0	47	1.09
12975862--12975901	17	2.4	17	84	16	57	57	2	2	37	1.26
12976879--12976926	22	2.3	21	80	13	55	60	4	0	35	1.16
12976941--12977003	18	3.3	18	74	14	56	50	1	0	47	1.10
12976911--12976974	29	2.3	27	79	15	67	53	1	1	43	1.19
12976959--12977047	29	3.1	29	82	6	101	50	1	1	47	1.15
12977098--12977139	21	2.0	20	86	4	57	52	2	0	45	1.13
12977090--12977200	50	2.1	54	78	17	128	50	2	0	45	1.22
12977260--12977497	21	11.2	21	70	13	105	42	2	4	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12977300--12977395	10	9.2	10	70	8	66	41	4	3	51	1.37
12977346--12977407	20	3.0	20	73	2	61	45	3	4	46	1.40
12977302--12977502	21	9.6	21	75	8	151	42	2	4	49	1.39
12979263--12979294	3	10.7	3	100	0	64	34	0	0	65	0.93
12980194--12980273	30	2.7	29	82	7	81	37	1	3	57	1.25
12980353--12980394	12	3.4	12	78	18	50	80	0	14	4	0.86
12999821--12999877	23	2.4	25	80	11	66	45	14	10	29	1.78
12999836--12999888	26	2.0	26	82	7	63	43	16	13	26	1.85
12999946--12999979	15	2.3	15	100	0	68	67	23	0	8	1.18
13003624--13003677	25	2.2	25	93	0	90	35	9	16	38	1.81
13003933--13003966	16	2.1	17	94	5	61	17	17	29	35	1.93
13004013--13004047	17	2.1	17	88	0	52	20	14	28	37	1.91
13003782--13004112	80	4.0	81	87	5	416	22	16	34	26	1.95
13004112--13004178	23	2.9	23	100	0	134	26	20	31	20	1.98
13004159--13004381	81	2.8	81	94	1	376	22	16	35	25	1.95
13003886--13004381	270	1.8	269	91	1	823	22	16	34	25	1.95
13004928--13004971	19	2.4	18	82	14	54	50	0	2	47	1.13
13013416--13013467	24	2.1	25	92	3	88	19	3	9	67	1.35
13022446--13022483	2	19.0	2	88	0	58	0	44	2	52	1.14
13026744--13026787	22	2.0	22	91	8	72	31	9	13	45	1.75
13027300--13027374	25	3.1	25	85	11	95	14	21	16	48	1.81
13030996--13031039	22	2.0	22	95	0	79	31	6	13	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13038082--13038106	2	12.5	2	100	0	50	48	0	0	52	1.00
13043077--13044151	565	1.9	564	88	2	1606	44	10	11	33	1.75
13050912--13050975	27	2.4	27	82	10	85	42	9	3	45	1.52
13051445--13051479	2	17.5	2	100	0	70	51	0	0	48	1.00
13053372--13053458	33	2.7	32	72	13	79	14	17	27	40	1.89
13057096--13057134	15	2.7	15	88	4	53	25	0	0	74	0.82
13060006--13060057	23	2.2	25	83	13	65	46	1	1	50	1.23
13064888--13064926	19	2.2	18	86	9	53	48	0	2	48	1.15
13066230--13066279	21	2.5	20	83	6	64	44	6	2	48	1.39
13074405--13074461	27	2.2	25	84	12	71	47	8	3	40	1.52
13074405--13074471	25	2.6	24	81	13	71	43	10	2	43	1.54
13074424--13074479	25	2.2	26	81	12	62	39	8	5	46	1.58
13075178--13075278	11	9.0	11	68	21	59	73	1	9	14	1.18
13075168--13075298	13	9.8	13	71	16	74	74	2	7	16	1.15
13075246--13075298	14	3.6	14	80	14	61	79	0	3	16	0.88
13075244--13075292	17	2.9	17	88	8	66	77	0	4	18	0.92
13075203--13075288	22	3.9	22	75	17	65	74	2	8	15	1.15
13081047--13081090	22	2.0	22	95	0	79	43	13	11	31	1.80
13084737--13084840	23	4.4	23	88	2	127	41	17	25	15	1.89
13084988--13085031	22	2.0	22	95	0	79	43	13	11	31	1.80
13089270--13089317	25	1.9	24	87	8	69	41	2	8	47	1.45
13089271--13089326	6	9.2	6	75	11	51	39	1	10	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13089491--13089520	9	3.2	9	95	4	51	63	0	0	36	0.95
13089493--13089522	10	3.1	10	95	4	53	63	0	0	36	0.95
13090600--13090653	27	2.0	27	100	0	108	48	14	7	29	1.71
13095716--13095757	17	2.4	17	84	11	50	61	2	0	35	1.09
13095717--13095757	9	4.7	9	77	17	50	63	2	0	34	1.08
13095718--13095775	26	2.2	26	81	6	64	68	1	3	25	1.14
13096014--13096062	24	2.0	24	92	0	80	28	20	0	51	1.48
13096602--13096669	23	3.0	23	79	10	70	72	0	14	13	1.13
13096878--13096928	25	2.0	25	88	0	75	47	1	9	41	1.48
13097012--13097067	25	2.3	23	84	9	67	53	7	3	35	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130