genome.fa.s556.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  96  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18842411--18842546	65	2.1	66	81	15	160	66	5	1	27	1.21
18849573--18849626	26	2.1	26	82	6	65	35	0	0	64	0.94
18849571--18849626	18	2.9	18	73	19	51	33	0	0	66	0.92
18849868--18849928	24	2.5	23	82	10	68	14	8	0	77	0.99
18851621--18851679	23	2.6	21	78	19	57	40	0	1	57	1.09
18856058--18856083	13	2.0	13	100	0	52	53	15	30	0	1.42
18856149--18856188	21	1.9	21	84	0	53	42	15	12	30	1.83
18858173--18858231	20	3.0	20	94	0	100	18	30	28	22	1.97
18858268--18858303	7	5.1	7	87	12	56	16	0	0	83	0.65
18858268--18858303	13	2.5	15	86	13	58	16	0	0	83	0.65
18858524--18858557	11	2.9	12	86	8	52	20	0	0	79	0.73
18858874--18858939	31	2.1	32	83	8	82	22	25	19	31	1.98
18859008--18859052	19	2.4	19	80	0	54	22	26	22	28	1.99
18859212--18859342	64	2.0	64	100	0	262	15	47	23	13	1.81
18859336--18859378	5	8.6	5	80	10	52	20	44	32	2	1.65
18859403--18859438	13	2.8	13	100	0	72	11	0	5	83	0.80
18859398--18859474	32	2.5	30	79	8	82	10	3	6	79	1.04
18859398--18859482	33	2.6	32	76	10	84	11	4	5	77	1.09
18859457--18859914	156	2.9	161	94	2	777	28	14	17	39	1.89
18863621--18863692	16	4.4	16	82	3	72	76	0	18	5	0.97
18863615--18863676	16	3.7	17	78	8	74	77	0	17	4	0.94
18863646--18863713	16	4.2	16	80	10	68	75	0	19	5	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18863670--18863713	17	2.8	16	83	10	63	72	0	18	9	1.10
18863670--18863709	8	4.9	8	87	6	62	75	0	15	10	1.05
18864902--18865307	41	10.0	40	90	5	554	23	18	21	36	1.94
18865438--18865496	20	3.0	20	94	0	100	18	30	28	22	1.97
18865534--18865568	7	5.1	7	86	6	54	17	0	0	82	0.66
18865537--18865567	13	2.4	13	94	0	53	16	0	0	83	0.64
18865647--18865688	14	2.9	14	86	10	50	35	0	4	59	1.19
18865660--18865688	13	2.1	14	93	6	51	34	0	0	65	0.93
18865782--18865814	12	2.9	12	86	13	52	21	0	0	78	0.75
18866127--18866197	31	2.3	31	85	4	99	21	26	23	28	1.99
18866261--18866304	19	2.3	19	88	0	61	22	29	22	25	1.99
18866524--18866551	5	5.6	5	100	0	56	17	42	39	0	1.50
18866620--18867078	156	2.9	161	93	2	759	28	14	17	39	1.88
18876859--18876884	3	8.7	3	100	0	52	30	0	0	69	0.89
18885556--18885618	26	2.5	26	84	2	74	41	0	6	52	1.27
18888005--18888035	2	15.5	2	93	0	53	48	0	3	48	1.17
18889984--18890021	14	2.8	13	92	4	58	26	0	2	71	1.00
18889980--18890028	13	3.8	13	84	7	55	28	0	2	69	1.00
18897090--18897145	22	2.5	22	97	2	103	37	14	17	30	1.90
18900710--18900740	15	2.1	15	93	0	53	41	0	0	58	0.98
18901325--18901397	37	2.0	37	88	0	110	58	5	1	34	1.29
18901734--18901771	20	1.9	20	84	10	51	31	5	7	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18902003--18902047	17	2.6	17	89	6	65	37	6	0	55	1.26
18901987--18902090	9	11.4	9	68	21	58	32	4	1	60	1.29
18902056--18902116	27	2.3	26	75	13	61	37	3	3	55	1.32
18902730--18902769	20	1.9	22	85	10	57	50	0	2	47	1.14
18903433--18903457	11	2.3	11	100	0	50	44	0	0	56	0.99
18912581--18912634	28	1.9	28	96	0	99	50	18	16	14	1.79
18917498--18917536	11	3.5	11	85	3	51	30	2	0	66	1.05
18918497--18918555	21	2.8	21	82	10	59	33	0	3	62	1.12
18918538--18918612	37	2.0	38	84	2	98	40	1	0	58	1.06
18918520--18918608	29	3.1	29	77	9	76	41	1	0	57	1.06
18918557--18918610	19	2.9	19	81	10	67	44	0	0	55	0.99
18918512--18918611	11	8.6	11	70	18	53	40	1	0	59	1.04
18924688--18924718	10	3.1	10	95	0	53	32	9	19	38	1.84
18928107--18928147	20	2.0	20	86	13	57	34	0	0	65	0.93
18928164--18928215	21	2.5	21	93	6	88	51	0	0	48	1.00
18929438--18929476	20	1.9	20	84	5	51	30	12	17	38	1.88
18930525--18930603	29	2.5	31	78	12	81	49	2	3	44	1.34
18930821--18930859	20	2.0	20	94	0	69	35	17	20	25	1.95
18930826--18930870	20	2.2	20	88	0	63	33	24	17	24	1.96
18932060--18932118	24	2.4	25	80	8	68	62	5	30	1	1.26
18933227--18933265	20	2.1	18	90	9	60	51	0	0	48	1.00
18933388--18933476	39	2.4	36	85	14	94	49	2	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18933387--18933462	39	1.9	39	89	10	120	52	1	1	44	1.17
18933612--18933655	23	1.9	23	85	0	61	59	0	0	40	0.98
18938895--18938922	2	14.0	2	100	0	56	50	0	0	50	1.00
18939066--18939096	14	2.2	14	100	0	62	22	19	22	35	1.96
18942833--18942907	28	2.6	29	78	6	89	61	1	5	32	1.27
18942922--18943133	104	2.0	105	81	9	247	36	6	2	54	1.38
18943116--18943148	17	1.9	17	100	0	66	39	0	0	60	0.97
18951561--18951654	35	2.6	35	85	11	118	36	14	11	37	1.83
18951903--18952172	140	1.9	142	84	4	359	24	12	21	42	1.87
18951971--18952223	99	2.5	99	81	6	292	23	10	21	43	1.84
18951858--18952440	240	2.4	239	85	3	717	24	11	20	43	1.84
18952303--18952678	99	3.7	98	75	9	308	24	11	21	43	1.85
18952623--18952710	29	2.9	30	70	14	72	25	12	19	43	1.86
18952738--18952922	46	3.9	46	77	5	199	30	10	18	40	1.84
18952733--18952955	96	2.4	92	80	7	250	34	11	17	37	1.86
18953522--18953559	19	2.0	20	84	5	51	71	23	2	2	1.12
18956468--18956509	3	14.0	3	100	0	84	33	0	0	66	0.92
18956514--18956568	28	1.9	29	81	3	67	40	7	5	47	1.54
18956838--18956878	21	2.0	21	85	0	55	51	0	2	46	1.14
18967157--18968019	372	2.3	370	84	3	1101	21	30	20	26	1.98
18974548--18974580	15	2.2	15	89	10	50	36	0	3	60	1.12
18977011--18977069	30	1.9	30	83	10	75	37	8	3	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18979285--18979422	69	2.0	66	94	4	240	35	20	19	24	1.96
18983857--18984015	79	2.0	79	96	0	291	38	22	14	25	1.92
18990330--18990399	15	4.5	15	67	19	54	42	0	0	57	0.99
18991944--18991973	1	30.0	1	100	0	60	100	0	0	0	0.00
18993728--18993790	23	2.6	24	75	5	65	58	1	1	38	1.17
18994175--18994332	79	2.0	79	98	0	307	37	15	11	34	1.84
18994613--18994661	3	16.0	3	95	4	89	67	0	0	32	0.91
18998028--18998063	7	5.1	7	100	0	72	27	27	13	30	1.94
18999897--18999955	17	3.6	18	71	19	56	49	0	1	49	1.11
19009730--19009758	14	2.1	14	93	6	51	58	0	0	41	0.98
19017112--19017168	20	2.8	21	76	10	55	22	15	3	57	1.53
19023811--19023894	42	2.0	42	88	0	123	29	9	25	35	1.87
19026818--19027151	175	1.9	174	90	1	526	23	21	12	42	1.87
19029246--19029606	59	6.1	57	75	14	284	35	11	6	46	1.65
19029246--19029606	118	3.0	118	84	7	441	35	11	6	46	1.65
19029617--19029689	13	5.1	14	78	16	71	76	0	4	19	0.94
19029617--19029689	10	7.7	9	79	14	67	76	0	4	19	0.94
19029617--19029683	17	3.8	17	75	25	59	76	0	4	19	0.96
19029623--19029689	21	3.2	21	82	16	86	77	0	2	19	0.89
19029622--19029689	5	14.2	5	73	22	58	77	0	2	19	0.89
19029622--19029678	12	5.2	11	76	21	57	77	0	3	19	0.92
19029623--19029678	22	2.6	21	88	11	78	76	0	3	19	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19029640--19029694	14	3.6	15	74	16	51	78	0	1	20	0.85
19029987--19030029	18	2.3	19	88	4	61	0	39	0	60	0.97
19029987--19030036	12	3.8	14	75	19	54	0	40	0	60	0.97
19030643--19030683	20	2.0	20	90	9	64	56	0	4	39	1.21
19030769--19030827	11	5.5	11	75	13	52	72	5	1	20	1.12
19030765--19030843	20	3.7	21	77	13	72	73	3	1	21	1.06
19030762--19030858	23	4.1	23	74	17	74	75	4	1	19	1.03
19030769--19030841	33	2.2	35	85	9	100	73	4	1	20	1.06
19030751--19030855	14	7.5	14	74	17	60	73	3	1	20	1.09
19031067--19031197	41	3.2	40	89	6	183	41	19	12	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130