genome.fa.s556.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  6  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1566151--1566192	22	1.9	22	85	9	59	42	2	9	45	1.49
1566843--1566873	14	2.2	14	100	0	62	38	12	0	48	1.42
1567374--1567455	38	2.2	38	97	0	155	48	10	8	31	1.68
1568203--1568227	11	2.3	11	100	0	50	32	0	8	60	1.26
1568603--1568650	13	3.1	16	77	20	57	37	0	4	58	1.18
1568640--1569091	168	2.8	152	82	12	602	45	5	6	42	1.55
1568764--1569024	87	3.1	87	62	16	211	42	6	5	44	1.55
1570014--1570062	16	3.1	17	72	19	52	36	0	4	59	1.17
1570052--1570359	152	2.0	154	88	2	460	46	5	5	42	1.52
1572794--1572883	45	2.0	45	100	0	180	37	13	20	28	1.90
1575214--1575240	2	13.5	2	100	0	54	48	0	0	51	1.00
1580138--1580166	2	14.5	2	100	0	58	48	0	51	0	1.00
1594162--1594318	52	3.0	52	85	3	183	28	24	7	40	1.82
1594358--1594493	52	2.6	52	88	4	186	27	23	6	42	1.79
1594166--1594535	185	2.0	185	97	0	695	27	24	7	40	1.82
1595443--1595599	52	3.0	52	82	7	185	26	21	7	43	1.79
1600640--1600706	33	2.0	33	100	0	134	43	17	8	29	1.80
1600649--1600719	33	2.2	33	84	5	90	46	21	9	22	1.80
1602620--1602670	26	2.0	26	88	7	77	5	3	25	64	1.33
1609732--1609797	33	2.0	33	100	0	132	54	12	12	21	1.69
1618361--1618412	17	3.1	16	75	8	50	44	0	5	50	1.26
1618492--1618539	18	2.5	19	80	6	62	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618700--1618747	12	3.9	12	76	12	53	45	4	2	47	1.33
1618700--1618736	14	2.8	14	88	8	51	43	5	2	48	1.40
1618700--1618750	26	2.0	24	85	7	66	47	3	1	47	1.32
1622817--1622873	28	2.0	28	90	6	89	29	24	7	38	1.82
1622884--1622941	28	2.0	29	86	3	82	31	20	3	44	1.68
1622812--1623095	68	4.2	67	86	3	385	29	20	4	45	1.72
1624407--1624450	15	3.0	15	77	16	56	50	0	6	43	1.29
1624653--1624696	20	2.2	20	88	8	63	61	0	2	36	1.09
1631670--1631756	29	2.8	30	81	10	104	52	9	5	32	1.57
1631813--1631855	18	2.4	19	80	11	54	48	0	2	48	1.14
1632685--1632723	19	2.1	19	90	0	60	58	2	0	38	1.12
1634338--1634371	4	8.5	4	93	0	59	26	23	0	50	1.50
1643883--1643922	19	2.2	18	90	4	62	40	0	0	60	0.97
1644988--1645032	2	22.5	2	100	0	90	0	48	0	51	1.00
1645032--1645064	2	16.5	2	100	0	66	48	0	0	51	1.00
1652491--1652552	24	2.5	24	86	2	79	48	0	1	50	1.10
1652509--1652586	37	2.0	40	85	14	110	48	1	1	48	1.17
1652489--1652586	12	7.8	12	74	16	65	46	1	1	51	1.14
1652497--1652587	26	3.6	25	79	10	69	47	1	1	50	1.15
1652565--1652633	26	2.6	27	78	13	70	46	0	4	49	1.21
1654165--1654225	25	2.4	25	100	0	122	27	13	14	44	1.83
1654203--1654343	37	3.8	37	80	8	162	29	12	25	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1654208--1654339	35	3.6	38	79	9	139	29	11	25	33	1.91
1654377--1654468	38	2.4	38	90	0	157	29	13	23	33	1.92
1654714--1654798	34	2.5	36	83	12	101	58	0	1	40	1.05
1655185--1655217	13	2.7	13	90	9	52	33	3	0	63	1.10
1655185--1655217	6	5.5	6	86	13	50	33	3	0	63	1.10
1655172--1655226	14	3.5	15	76	21	51	30	1	1	65	1.13
1657577--1657602	3	8.7	3	100	0	52	30	0	0	69	0.89
1660854--1660947	27	3.4	28	80	11	104	58	4	6	30	1.42
1660841--1660917	37	2.1	38	82	7	95	61	3	3	31	1.32
1660851--1660945	29	3.3	29	80	14	108	58	4	5	31	1.39
1661612--1661657	2	23.0	2	100	0	92	50	0	0	50	1.00
1663108--1663216	57	1.9	56	85	5	148	37	8	11	42	1.72
1663222--1663267	12	4.0	12	80	11	60	47	6	8	36	1.60
1667750--1667782	16	2.2	16	89	10	52	39	0	0	60	0.97
1667805--1667844	18	2.2	18	86	8	55	50	0	0	50	1.00
1667774--1667867	42	2.3	40	82	8	111	47	2	0	50	1.13
1669174--1669239	29	2.3	28	80	15	73	34	0	0	65	0.93
1669202--1669242	20	2.0	21	85	4	57	46	0	0	53	1.00
1669826--1669855	15	1.9	16	93	6	53	80	0	0	20	0.72
1672535--1672588	23	2.5	22	82	8	58	51	7	0	40	1.30
1675159--1675215	30	1.9	30	92	0	96	47	12	22	17	1.81
1675482--1675535	28	1.9	28	96	0	99	46	7	5	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1678331--1678357	12	2.2	12	100	0	54	48	7	0	44	1.31
1681901--1681938	13	2.9	13	84	11	51	0	18	0	81	0.69
1681901--1681938	16	2.4	16	90	0	58	0	18	0	81	0.69
1682346--1682462	31	3.5	31	76	18	135	14	15	18	51	1.77
1682377--1682541	50	3.9	41	75	16	149	18	16	16	48	1.82
1682327--1682462	71	1.9	72	96	1	256	16	16	19	47	1.82
1682444--1682481	19	2.0	19	100	0	76	15	10	15	57	1.64
1688855--1688910	29	1.9	29	92	0	94	57	3	1	37	1.27
1690174--1690233	14	4.1	14	79	16	61	20	1	5	73	1.11
1690305--1690347	21	2.0	21	82	8	52	41	2	2	53	1.26
1690688--1690731	3	15.3	3	90	9	74	68	0	0	31	0.90
1691937--1691984	16	2.9	17	81	12	55	41	2	0	56	1.11
1691969--1692007	16	2.4	16	82	4	51	48	0	5	46	1.24
1693223--1693262	19	2.0	21	85	9	57	35	2	0	62	1.09
1693279--1693353	22	3.5	22	98	1	143	49	0	0	50	1.00
1694181--1694242	30	2.2	27	91	8	97	66	1	0	32	1.02
1694271--1694319	25	1.9	26	91	4	82	63	8	0	28	1.23
1694268--1694319	27	2.0	26	88	3	77	61	9	0	28	1.27
1695208--1695267	20	2.9	21	85	5	86	43	0	0	56	0.99
1696075--1696105	16	1.9	16	93	0	53	6	12	6	74	1.21
1695378--1697314	656	3.0	653	82	10	2110	34	11	7	47	1.66
1696637--1696690	29	1.9	28	82	14	67	35	5	5	53	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700206--1700233	2	14.0	2	100	0	56	0	50	0	50	1.00
1700615--1700653	20	2.0	20	89	0	60	46	28	10	15	1.78
1703338--1703392	20	2.9	19	83	5	67	34	1	1	61	1.17
1703354--1703401	17	2.7	18	84	12	55	37	0	0	62	0.95
1704140--1704177	20	1.9	20	94	0	67	55	2	2	39	1.28
1704867--1704916	25	2.0	25	92	0	82	22	34	18	26	1.96
1707414--1707460	23	2.0	23	100	0	94	46	4	14	34	1.64
1709008--1709050	18	2.5	17	88	7	61	41	0	4	53	1.21
1710621--1710685	27	2.5	25	80	9	85	66	0	1	32	1.01
1711455--1711513	11	5.1	11	80	11	55	64	0	3	32	1.10
1711455--1711513	23	2.5	23	81	10	66	64	0	3	32	1.10
1720788--1720821	17	1.9	18	88	5	52	64	0	35	0	0.94
1721190--1721236	19	2.5	19	92	0	76	34	2	23	40	1.67
1729001--1729039	7	5.6	7	88	11	62	30	12	12	43	1.81
1733383--1733407	10	2.5	10	100	0	50	0	8	0	92	0.40
1738621--1738651	15	2.1	15	93	0	53	77	0	0	22	0.77
1740773--1740811	15	2.5	17	76	23	50	56	0	0	43	0.99
1742047--1742079	2	16.5	2	100	0	66	51	0	48	0	1.00
1747658--1747692	17	2.1	17	89	5	54	14	57	0	28	1.38
1748394--1748525	66	2.0	65	91	4	212	27	7	21	43	1.80
1754200--1754567	183	2.0	183	97	0	691	27	10	20	41	1.84
1760799--1760855	30	1.9	30	85	0	78	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1762040--1762101	27	2.3	27	76	18	65	51	16	4	27	1.64
1786840--1786870	6	5.2	6	100	0	62	32	0	16	51	1.44
1789092--1789139	24	2.0	24	100	0	96	33	4	33	29	1.77
1789816--1789859	22	2.0	22	91	8	72	45	13	9	31	1.75
1793510--1793568	25	2.4	25	86	5	77	42	18	25	13	1.87
1793758--1793800	22	2.0	22	85	0	59	44	9	9	37	1.69
1794009--1794045	18	2.1	18	89	0	56	37	0	13	48	1.43
1794076--1794108	17	1.9	17	88	11	50	57	0	3	39	1.14
1824128--1824249	61	2.0	61	96	3	228	24	9	15	50	1.72
1824956--1825061	53	2.0	53	94	0	185	15	17	23	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130