genome.fa.s556.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  71  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14678892--14678960	23	3.0	23	70	10	61	73	5	11	8	1.23
14680847--14680919	27	2.7	27	81	10	78	39	0	4	56	1.19
14682256--14682284	2	14.5	2	100	0	58	51	0	0	48	1.00
14683755--14683994	118	2.0	118	100	0	480	26	20	23	30	1.98
14684273--14684312	21	1.9	21	84	0	53	17	0	10	72	1.11
14684261--14684309	15	3.1	15	85	8	53	20	0	8	71	1.11
14685089--14685127	20	2.0	20	89	0	60	28	7	10	53	1.62
14685335--14685439	18	5.8	18	74	19	85	33	5	10	50	1.60
14685319--14685423	36	3.0	34	82	10	115	33	5	9	51	1.58
14685315--14685439	18	6.9	17	72	18	76	34	5	9	50	1.59
14686463--14686524	21	2.8	22	75	22	67	24	11	6	58	1.56
14692864--14692930	34	1.9	35	87	6	100	23	4	23	47	1.70
14692919--14693002	38	2.2	37	85	4	114	35	11	17	34	1.87
14692923--14693012	38	2.3	39	84	3	110	38	12	17	31	1.87
14693250--14693286	13	2.8	13	95	4	65	21	2	5	70	1.20
14693943--14693977	17	2.1	17	89	10	54	25	5	11	57	1.56
14694017--14694156	24	6.0	24	74	13	123	34	2	8	54	1.46
14694050--14694176	24	5.5	23	75	5	98	33	3	9	52	1.52
14694017--14694156	47	3.0	45	80	11	149	34	2	8	54	1.46
14694138--14694195	16	3.6	16	70	25	59	32	5	8	53	1.54
14694064--14694202	24	6.8	20	68	23	69	33	4	9	52	1.53
14694142--14694202	32	1.9	32	96	0	113	31	6	9	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14694379--14694417	19	2.1	19	85	0	51	30	5	10	53	1.56
14694539--14694589	20	2.5	20	78	12	59	29	3	13	52	1.58
14698505--14698537	16	2.1	16	88	5	50	48	27	6	18	1.71
14699453--14699481	15	1.9	15	100	0	58	68	20	0	10	1.18
14710663--14710736	37	2.0	37	91	0	121	39	16	12	32	1.85
14711496--14711521	11	2.4	11	100	0	52	0	7	0	92	0.39
14713219--14713272	17	3.2	16	82	10	63	24	0	24	51	1.48
14714706--14714759	28	2.0	26	86	13	74	29	0	0	70	0.88
14723056--14723109	17	3.2	16	84	10	63	22	0	24	53	1.46
14723484--14723527	23	2.0	23	86	4	63	50	11	0	38	1.39
14723525--14723584	9	6.7	9	75	9	52	78	0	3	18	0.89
14724590--14724629	3	13.7	3	89	5	64	32	0	2	65	1.06
14725443--14725475	8	4.1	8	85	14	50	36	0	0	63	0.95
14725444--14725475	16	1.9	17	93	6	57	37	0	0	62	0.95
14726235--14726262	8	3.5	8	100	0	56	67	0	0	32	0.91
14727671--14728231	187	3.0	187	99	0	1113	31	11	18	39	1.86
14735566--14735642	21	3.4	22	72	18	77	49	1	5	44	1.33
14744020--14744068	24	2.0	24	96	0	89	46	12	18	22	1.82
14744138--14744191	29	2.0	27	85	10	74	33	7	5	53	1.52
14744199--14744227	2	14.5	2	100	0	58	51	0	0	48	1.00
14747514--14747623	54	2.0	55	98	1	213	36	7	38	18	1.78
14752488--14752539	20	2.6	20	84	0	77	32	0	17	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14752480--14752522	14	3.1	14	89	0	59	34	0	13	51	1.42
14752492--14752534	16	2.7	16	85	0	59	27	0	20	51	1.48
14754790--14754828	14	2.4	18	76	24	50	5	38	0	56	1.22
14767972--14768002	2	16.0	2	93	6	55	51	0	0	48	1.00
14768186--14768228	19	2.3	19	79	0	50	55	2	4	37	1.33
14768330--14768401	29	2.5	28	80	8	92	61	4	1	33	1.24
14768504--14768547	17	2.6	16	79	10	52	34	4	4	56	1.40
14768561--14768610	18	2.7	18	82	11	57	26	2	4	68	1.18
14768561--14768631	19	3.8	19	73	12	58	30	4	2	61	1.29
14768630--14768670	20	2.0	20	86	9	57	39	4	0	56	1.21
14771724--14771766	13	3.4	13	83	3	52	27	13	0	58	1.37
14774638--14774682	3	15.3	3	95	4	83	68	0	0	31	0.89
14774681--14774715	3	11.7	3	100	0	70	34	0	0	65	0.93
14775655--14775688	10	3.4	10	84	15	52	41	0	0	58	0.98
14775847--14775897	19	2.6	21	81	15	72	52	0	0	47	1.00
14776453--14776501	19	2.7	18	84	6	62	42	0	2	55	1.11
14776453--14776517	20	3.4	19	81	6	69	41	1	1	55	1.18
14776883--14776971	24	3.9	22	77	16	92	56	3	3	37	1.33
14776957--14777007	21	2.3	23	76	6	61	64	0	0	35	0.94
14778440--14778477	3	12.7	3	94	0	67	36	0	28	34	1.58
14778967--14778991	13	1.9	13	100	0	50	64	0	4	32	1.12
14780588--14780649	16	4.1	16	72	18	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14780585--14780643	21	2.8	21	68	14	50	59	0	0	40	0.97
14780838--14780887	19	2.4	22	83	12	70	56	0	2	42	1.11
14781374--14781585	111	2.0	105	86	9	299	35	19	7	36	1.81
14785659--14785698	21	2.0	21	90	9	66	47	0	0	52	1.00
14792846--14792900	25	2.2	25	80	9	58	40	7	5	47	1.54
14792955--14793017	13	4.8	13	78	5	56	76	4	0	19	0.96
14792955--14793026	26	2.7	26	76	2	72	75	6	0	18	1.02
14792975--14793019	13	3.5	13	84	0	63	75	2	0	22	0.91
14797342--14797388	18	2.5	20	83	13	64	72	6	14	6	1.25
14801504--14801533	4	7.8	4	92	7	53	0	23	0	76	0.78
14802554--14802700	57	2.6	57	84	1	204	21	18	16	43	1.88
14802800--14802964	58	2.9	58	76	8	158	24	22	12	40	1.89
14802951--14803176	122	1.8	123	81	3	285	21	20	11	46	1.83
14803110--14803198	33	2.8	32	78	1	97	17	14	12	55	1.70
14803896--14803938	21	2.0	21	86	0	59	23	11	0	65	1.25
14809761--14809798	19	1.9	20	84	10	51	52	0	2	44	1.14
14809865--14809907	16	2.8	15	82	6	50	51	2	2	44	1.27
14812932--14812977	15	2.7	17	81	18	60	73	6	0	19	1.04
14816925--14817018	46	2.1	45	93	2	161	60	3	12	23	1.47
14817653--14817692	18	2.3	18	86	4	55	82	2	2	12	0.87
14818111--14818145	11	3.3	11	92	4	54	60	0	0	40	0.97
14818189--14818244	29	1.9	29	92	0	94	37	1	1	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14818575--14818602	2	14.0	2	100	0	56	50	0	0	50	1.00
14819632--14819674	17	2.5	17	77	7	52	46	0	0	53	1.00
14819631--14819691	23	3.0	23	73	26	66	45	0	0	54	1.00
14822772--14822797	2	13.0	2	100	0	52	50	0	0	50	1.00
14823158--14823183	2	13.0	2	100	0	52	0	50	0	50	1.00
14823183--14823215	2	17.0	2	93	6	59	48	0	0	51	1.00
14831484--14831521	15	2.5	16	87	8	53	31	0	21	47	1.51
14842647--14842787	3	47.7	3	78	16	125	28	4	2	64	1.26
14842789--14842836	5	9.2	5	78	17	53	0	22	0	77	0.78
14843227--14843262	10	3.6	10	88	0	54	13	0	8	77	0.98
14843601--14843639	13	3.1	13	88	7	62	15	0	2	82	0.79
14843603--14843639	17	2.2	17	90	0	56	16	0	2	81	0.81
14854745--14854812	32	2.2	33	81	7	88	25	19	11	44	1.84
14854745--14855242	89	5.6	89	76	5	402	19	22	14	44	1.86
14854748--14855233	176	2.8	178	78	4	428	19	22	13	44	1.86
14855365--14855426	26	2.4	26	76	15	74	17	20	24	37	1.94
14855501--14855632	3	46.3	3	81	13	118	34	6	0	58	1.30
14855638--14855679	20	2.2	19	91	4	66	0	19	0	80	0.70
14855638--14855690	24	2.2	23	78	15	54	1	20	0	77	0.87
14855644--14855691	20	2.3	20	80	13	53	2	20	0	77	0.88
14856408--14856442	18	1.9	18	94	0	61	17	5	0	77	0.96
14856408--14856458	26	2.0	25	88	3	75	19	5	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14860615--14860654	20	2.0	20	95	0	71	27	12	15	45	1.82
14861125--14861166	12	3.5	12	93	6	68	33	9	0	57	1.31
14861179--14861233	18	3.0	19	77	17	62	50	0	3	45	1.19
14861158--14861215	23	2.4	25	75	19	59	51	1	1	44	1.21
14861166--14861233	36	1.9	36	87	3	102	50	0	2	47	1.16
14861321--14861360	19	2.0	20	85	4	55	57	2	10	30	1.45
14861468--14861518	24	2.1	24	88	0	75	58	5	1	33	1.33
14863602--14863659	9	6.2	9	74	7	53	50	6	6	36	1.56
14863616--14863657	18	2.3	18	91	0	66	47	9	7	35	1.64
14865499--14865596	30	3.3	29	76	12	92	46	6	7	39	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130