genome.fa.s556.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  126  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25529389--25529457	27	2.5	28	77	11	63	40	1	0	57	1.07
25530709--25530798	39	2.4	38	76	10	87	46	2	0	51	1.13
25540873--25540920	19	2.5	20	76	10	55	60	0	0	39	0.97
25555197--25555239	22	1.9	23	85	4	61	51	0	4	44	1.22
25556445--25556481	4	9.2	4	100	0	74	24	0	24	51	1.49
25556479--25556565	36	2.6	31	82	10	93	33	2	16	48	1.58
25558877--25558906	6	5.0	6	100	0	60	16	33	0	50	1.46
25564202--25564230	7	4.1	7	100	0	58	41	44	0	13	1.44
25569522--25569573	27	1.9	27	96	0	95	44	11	11	32	1.77
25574846--25574907	30	2.1	30	90	0	97	40	9	1	48	1.46
25577169--25577393	112	2.0	113	93	0	389	42	16	13	27	1.85
25584434--25584458	3	8.3	3	100	0	50	32	32	36	0	1.58
25585836--25585877	22	2.0	21	86	9	59	19	11	0	69	1.19
25586739--25586769	5	6.4	5	92	7	55	0	38	0	61	0.96
25592358--25592390	14	2.4	14	95	5	59	60	0	0	39	0.97
25592678--25592707	4	7.5	4	100	0	60	46	0	0	53	1.00
25600852--25601047	104	1.9	104	94	0	347	37	19	16	27	1.93
25604686--25604744	28	2.1	28	100	0	118	52	16	16	13	1.75
25609680--25609720	20	2.0	20	85	0	55	56	0	0	43	0.99
25610635--25610675	19	2.2	19	90	0	64	53	0	2	43	1.13
25610736--25610789	6	9.3	6	84	8	67	48	0	0	51	1.00
25610727--25610789	23	2.7	23	82	2	81	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25610743--25610791	17	2.8	18	78	12	66	46	0	0	53	1.00
25613136--25613160	2	12.5	2	100	0	50	52	48	0	0	1.00
25626460--25626529	34	2.1	34	94	0	122	32	17	24	25	1.96
25629225--25629288	26	2.5	26	73	12	71	43	9	7	39	1.66
25631628--25631662	18	2.0	17	88	5	52	31	11	37	20	1.88
25640754--25640806	28	1.9	27	88	3	79	28	28	5	37	1.80
25641676--25641710	17	2.1	17	88	0	52	60	0	0	40	0.97
25641682--25641719	14	2.4	16	87	12	53	52	0	0	47	1.00
25641682--25641715	17	2.0	17	94	0	59	50	0	0	50	1.00
25641842--25641927	42	2.0	42	88	0	127	48	5	4	40	1.48
25647285--25647322	20	2.0	19	90	10	60	26	5	0	68	1.11
25647651--25647676	13	2.0	13	100	0	52	15	7	15	61	1.55
25649893--25649984	34	2.8	31	74	19	80	36	1	5	56	1.30
25651748--25651817	36	1.9	36	94	0	122	35	11	17	35	1.85
25653236--25653285	24	2.1	24	100	0	100	22	16	16	46	1.84
25665631--25665669	19	2.1	19	85	9	53	48	0	2	48	1.15
25666016--25666302	111	2.5	115	86	8	424	42	22	10	25	1.85
25682111--25682172	29	2.2	26	78	13	61	56	3	6	33	1.41
25682542--25682572	12	2.6	12	89	0	53	38	51	0	9	1.35
25695904--25695966	16	4.1	16	70	13	60	42	4	1	50	1.32
25696310--25696349	20	2.0	20	85	9	55	52	7	0	40	1.30
25696479--25696535	26	2.2	27	81	6	73	50	3	1	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25700654--25700681	4	7.0	4	100	0	56	50	0	25	25	1.50
25702136--25702162	2	13.5	2	100	0	54	48	0	0	51	1.00
25704307--25704358	15	3.5	15	84	5	70	63	7	0	28	1.22
25704301--25704366	29	2.3	29	75	12	73	65	6	0	28	1.17
25704420--25704453	11	3.1	11	91	0	59	70	0	2	26	1.01
25704420--25704466	15	3.1	15	81	6	51	65	0	2	31	1.04
25706137--25706397	130	2.0	129	93	2	452	28	14	22	34	1.93
25708578--25708613	19	1.9	19	88	5	56	30	0	0	69	0.89
25708764--25708798	13	2.7	13	86	0	52	48	0	0	51	1.00
25719886--25719918	9	3.8	9	92	8	59	9	0	0	90	0.44
25719887--25719918	8	3.9	8	92	8	55	9	0	0	90	0.45
25719886--25719918	17	1.9	17	100	0	66	9	0	0	90	0.44
25720023--25720070	21	2.3	21	78	7	53	18	14	56	10	1.66
25735559--25735800	128	1.9	129	90	2	387	47	18	10	23	1.80
25736464--25736521	25	2.3	26	82	11	68	48	1	0	50	1.11
25736473--25736521	11	4.1	12	82	14	57	46	2	0	51	1.12
25736474--25736521	25	1.9	24	87	8	69	45	2	0	52	1.12
25750264--25750297	2	17.0	2	87	0	50	44	0	0	55	0.99
25762764--25762867	54	1.9	55	88	2	156	27	19	20	32	1.96
25785139--25785201	32	2.0	31	87	3	90	34	4	11	49	1.59
25785311--25785355	14	3.3	13	82	11	54	60	6	0	33	1.23
25787594--25787618	13	1.9	13	100	0	50	32	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25792284--25792318	17	2.1	17	89	5	54	2	20	0	77	0.90
25795771--25795828	25	2.4	25	86	8	77	56	0	0	43	0.99
25795784--25795830	12	3.9	12	75	8	51	57	0	0	42	0.98
25813505--25813563	26	2.3	26	81	16	70	30	5	1	62	1.26
25813655--25813692	2	19.0	2	100	0	76	50	0	0	50	1.00
25814595--25814624	14	2.1	15	93	6	53	36	13	13	36	1.84
25826208--25826250	12	3.7	11	85	14	52	69	0	0	30	0.88
25826186--25826240	29	2.0	27	82	7	65	60	0	0	40	0.97
25826814--25826864	24	2.1	24	85	0	66	35	9	0	54	1.33
25826956--25827004	24	2.0	24	88	4	71	57	0	0	42	0.99
25831968--25832064	41	2.3	40	81	13	117	54	0	1	44	1.06
25837651--25837702	21	2.5	22	93	6	90	48	0	0	51	1.00
25839065--25839094	3	10.0	3	100	0	60	66	0	0	33	0.92
25840019--25840049	2	15.5	2	100	0	62	51	0	0	48	1.00
25842456--25842512	24	2.4	23	88	5	78	59	0	0	40	0.97
25842454--25842509	23	2.3	24	84	12	78	58	0	0	41	0.98
25842457--25842519	23	2.7	23	80	7	56	61	0	0	38	0.96
25844964--25845007	18	2.5	17	92	7	70	34	0	0	65	0.93
25845669--25845697	2	14.5	2	100	0	58	51	0	48	0	1.00
25847750--25847868	7	16.7	7	72	19	52	19	1	1	77	0.94
25847760--25847858	6	15.5	6	69	22	60	19	2	2	76	0.98
25847746--25847868	21	5.8	21	72	16	74	19	1	1	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25847718--25847866	71	2.1	69	87	4	228	21	1	3	73	1.05
25847753--25847868	14	8.3	13	71	13	79	18	1	1	77	0.94
25847938--25848371	117	3.7	114	84	8	511	43	7	14	35	1.73
25847931--25848371	58	7.5	57	79	8	471	43	7	14	35	1.73
25852246--25852292	12	3.8	12	83	8	58	76	0	17	6	0.98
25854006--25854291	41	7.0	41	82	7	323	24	13	20	41	1.88
25853983--25854291	82	3.8	81	82	8	360	24	13	20	41	1.88
25854006--25854291	123	2.3	124	84	3	373	24	13	20	41	1.88
25854391--25854532	42	3.3	42	85	3	176	26	16	19	37	1.93
25854410--25854545	44	3.1	45	83	8	138	26	13	18	41	1.88
25854410--25854585	45	4.0	44	81	7	171	25	14	19	40	1.89
25854812--25854912	40	2.3	44	80	13	120	30	5	1	61	1.31
25854884--25854919	3	11.3	3	88	11	54	30	2	0	66	1.06
25854812--25854974	46	3.7	44	71	19	108	30	5	3	61	1.34
25854811--25854939	26	5.1	26	72	14	92	30	5	2	62	1.30
25854887--25854969	20	4.3	19	72	15	55	27	4	3	63	1.31
25855295--25855324	4	7.5	4	100	0	60	23	0	0	76	0.78
25855295--25855392	8	14.0	7	80	14	64	24	0	3	72	0.99
25855347--25855452	6	16.5	6	72	15	70	20	0	2	75	0.99
25855347--25855462	13	8.3	13	72	19	76	20	0	2	75	0.97
25855292--25855427	59	2.3	58	87	8	186	23	0	3	72	1.00
25855295--25855388	12	8.7	11	72	21	58	23	0	3	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25855315--25855413	25	3.2	31	74	22	102	25	0	5	69	1.08
25855408--25855462	14	3.8	15	79	13	62	16	1	1	80	0.90
25855519--25856019	119	4.3	115	81	8	464	43	6	12	37	1.69
25855519--25856019	58	8.5	58	80	7	519	43	6	12	37	1.69
25855519--25855961	177	2.5	176	85	4	579	43	6	12	37	1.69
25856596--25856640	22	2.0	22	82	0	54	33	4	0	62	1.15
25857503--25857528	9	2.9	9	100	0	52	11	0	0	88	0.52
25865342--25865413	20	3.6	20	78	0	90	68	11	1	19	1.28
25865346--25865426	40	2.0	40	97	0	153	65	11	2	20	1.36
25866257--25866290	2	18.0	2	88	11	54	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130