genome.fa.s556.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  54  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11773747--11774600	125	6.8	124	76	8	685	36	11	11	39	1.79
11773779--11773978	61	3.2	59	71	14	161	39	14	8	38	1.77
11773763--11774600	251	3.3	244	77	10	766	36	12	11	39	1.79
11774123--11774579	64	7.3	61	68	10	206	35	10	12	40	1.79
11773779--11774592	376	2.2	376	80	5	885	36	12	11	39	1.79
11774755--11775230	119	4.0	119	81	4	514	44	14	21	18	1.86
11775411--11775503	41	2.3	41	88	7	136	33	26	8	31	1.87
11785342--11785445	40	2.6	39	81	4	136	63	3	14	18	1.45
11786018--11786063	24	2.0	24	87	12	69	28	2	4	65	1.23
11786046--11786101	29	1.9	29	85	7	78	19	3	3	73	1.13
11786628--11786653	10	2.6	10	100	0	52	76	15	0	7	0.99
11787155--11787207	3	18.3	3	84	7	74	67	3	0	28	1.07
11793846--11793890	22	2.0	23	86	4	65	28	13	11	46	1.77
11794088--11794305	50	4.3	50	80	9	217	33	14	16	34	1.90
11794099--11794294	100	1.9	103	84	6	265	32	15	17	34	1.92
11801406--11801446	21	2.0	21	90	0	64	39	9	19	31	1.84
11809081--11809105	12	2.1	12	100	0	50	36	0	0	64	0.94
11809478--11809509	2	16.0	2	93	0	55	0	46	3	50	1.17
11810631--11810692	29	2.3	25	78	13	70	30	1	3	64	1.19
11810744--11810810	30	2.2	30	86	0	89	49	1	7	41	1.40
11811526--11811576	18	2.8	18	90	0	75	35	9	7	47	1.66
11811526--11811569	9	4.9	9	80	0	52	36	9	9	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11811740--11811769	11	2.6	11	94	5	51	60	0	0	40	0.97
11812811--11812912	39	2.6	39	80	1	114	43	9	10	36	1.73
11813290--11813341	24	2.1	25	82	10	63	75	7	3	13	1.17
11814760--11814927	91	1.8	91	85	2	239	39	14	16	29	1.88
11821275--11821366	46	2.0	46	95	0	166	20	28	10	40	1.86
11830071--11830157	44	2.0	44	90	0	138	27	8	27	36	1.85
11841156--11841202	24	2.0	24	83	8	60	29	17	17	36	1.92
11841492--11841546	21	2.5	22	79	5	67	38	3	10	47	1.56
11841575--11841651	22	3.4	21	79	15	75	36	5	15	42	1.69
11841704--11841742	18	2.2	18	85	0	51	41	15	12	30	1.85
11841906--11841978	32	2.3	32	87	0	101	34	16	12	36	1.86
11841987--11842027	16	2.5	16	84	4	55	39	12	7	41	1.70
11842050--11842127	18	4.4	18	75	3	86	37	11	8	42	1.73
11842050--11842127	35	2.2	36	79	2	86	37	11	8	42	1.73
11842141--11842181	19	2.1	19	86	9	55	39	14	2	43	1.59
11842223--11842286	18	3.5	18	74	18	69	31	10	9	48	1.70
11842242--11842328	18	4.7	18	69	18	63	28	12	10	48	1.74
11845202--11845258	30	1.9	30	89	7	89	33	3	12	50	1.57
11845392--11845443	21	2.5	21	81	6	61	55	3	5	34	1.42
11846107--11846140	17	1.9	18	88	5	52	67	0	2	29	1.05
11848050--11848094	24	1.9	23	86	4	63	55	0	0	44	0.99
11848610--11848651	20	2.2	20	86	4	59	59	0	23	16	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11849169--11849201	15	2.3	15	89	5	50	72	0	0	27	0.85
11849493--11849529	18	2.1	18	90	5	58	54	2	0	43	1.14
11849612--11849646	16	2.1	18	89	10	56	25	2	0	71	1.00
11850389--11850521	67	2.0	66	92	1	221	32	15	24	27	1.96
11853080--11853169	47	1.9	47	97	0	171	27	16	8	46	1.77
11855763--11855820	3	19.3	3	96	0	107	32	1	0	65	1.03
11859337--11859739	146	2.8	146	83	1	450	40	9	14	34	1.79
11862756--11862807	26	2.0	25	82	10	61	42	13	15	28	1.85
11865340--11865401	15	4.3	15	70	15	58	61	6	4	27	1.41
11865348--11865372	13	1.9	13	100	0	50	64	4	0	32	1.12
11865989--11866040	21	2.5	21	80	0	68	48	9	13	28	1.74
11866258--11866326	18	4.2	17	71	12	54	39	2	0	57	1.13
11866213--11866324	56	2.0	58	83	3	147	38	1	2	57	1.24
11867163--11867218	26	2.0	29	83	13	73	39	5	3	51	1.42
11867279--11867336	12	4.9	11	76	15	53	50	1	1	46	1.22
11867911--11867959	25	2.0	25	95	0	89	34	14	12	38	1.83
11868112--11868163	20	2.5	22	75	12	56	44	38	0	17	1.49
11868155--11868220	19	3.5	19	74	10	64	43	37	3	15	1.62
11868210--11868343	19	7.3	18	75	8	101	49	35	1	13	1.51
11871902--11871966	31	2.0	32	82	11	78	67	1	1	29	1.09
11871896--11871956	24	2.4	25	78	13	72	67	1	1	29	1.10
11871928--11871978	20	2.7	19	84	6	59	74	1	0	23	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11872389--11872413	4	6.2	4	100	0	50	24	28	0	48	1.52
11875370--11875411	21	2.0	22	85	4	59	64	0	30	4	1.14
11875408--11875500	6	14.8	6	73	13	64	75	2	18	4	1.07
11875449--11875492	16	2.8	16	83	12	56	77	2	18	2	0.98
11876775--11876933	83	1.9	83	98	0	309	34	20	13	31	1.91
11876911--11877013	51	2.0	51	100	0	206	32	17	15	34	1.91
11877046--11877205	32	4.9	33	73	10	82	35	16	16	31	1.91
11877125--11877344	64	3.4	64	76	5	208	36	16	16	30	1.91
11877066--11877702	32	19.8	33	66	11	187	35	17	16	30	1.93
11879929--11880025	3	30.7	3	75	13	79	59	1	6	32	1.29
11883553--11883587	11	3.3	11	88	4	54	71	0	25	2	1.00
11884188--11884245	28	2.1	28	81	12	66	25	6	17	50	1.71
11885718--11885816	47	2.1	48	88	5	148	22	12	10	55	1.66
11886107--11886157	20	2.5	20	81	12	59	76	1	5	15	1.07
11887097--11887165	31	2.2	31	86	0	93	28	7	33	30	1.84
11888047--11888114	18	3.8	18	86	0	100	38	14	8	38	1.78
11888201--11888289	16	5.6	16	67	7	56	43	14	8	32	1.77
11888317--11888369	3	17.7	3	100	0	106	32	0	0	67	0.91
11888673--11888712	14	2.9	14	88	0	62	42	15	2	40	1.60
11888728--11888791	14	5.1	14	67	27	54	39	10	4	45	1.60
11888687--11888963	69	3.9	71	81	3	303	40	12	4	42	1.62
11888687--11888963	24	11.8	24	80	6	289	40	12	4	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11890140--11890179	19	2.1	20	90	9	66	5	10	0	85	0.75
11890146--11890186	19	2.2	19	86	0	55	9	12	0	78	0.98
11894291--11894388	48	2.1	48	86	3	137	23	11	9	56	1.63
11894391--11894472	40	2.1	39	86	9	112	37	0	6	56	1.24
11894688--11894739	22	2.2	25	83	10	65	71	1	7	19	1.20
11894687--11894726	18	2.3	17	83	8	53	72	2	2	22	1.09
11905957--11906229	134	2.0	136	96	1	505	28	17	14	39	1.89
11907982--11908032	15	3.6	14	80	14	61	37	0	1	60	1.08
11908258--11908318	3	20.7	3	93	3	106	68	0	0	31	0.89
11911082--11911315	117	2.0	117	94	0	407	36	9	8	45	1.67
11912702--11912749	20	2.4	19	83	13	60	41	2	10	45	1.50
11914192--11914222	2	15.5	2	93	0	53	48	0	3	48	1.17
11913478--11915280	994	1.8	982	81	8	2270	35	8	9	46	1.66
11922596--11922643	19	2.9	15	75	21	51	50	12	14	22	1.77
11922601--11922640	19	2.1	19	100	0	80	52	10	17	20	1.72
11928667--11928713	18	2.6	18	82	0	58	34	23	10	31	1.89
11935758--11935804	3	15.7	3	100	0	94	31	0	0	68	0.90
11936626--11936650	12	2.1	12	100	0	50	24	8	0	68	1.16
11940496--11940732	121	2.0	121	95	0	429	34	21	14	29	1.93
11943149--11943191	21	2.0	21	86	0	59	41	0	20	37	1.53
11943340--11943372	9	3.3	10	91	8	50	54	0	0	45	0.99
11944905--11944960	20	2.8	20	70	20	53	46	3	8	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11945083--11945143	24	2.5	24	86	5	79	55	8	3	32	1.45
11945221--11945290	33	2.2	32	87	7	97	51	12	7	28	1.66
11945226--11945268	21	2.0	21	82	8	52	44	16	9	30	1.79
11945330--11945490	24	7.0	24	69	16	126	52	9	4	33	1.53
11945470--11945533	17	3.6	17	77	10	67	46	12	9	31	1.73
11946083--11946139	29	2.0	29	89	0	87	17	12	1	68	1.29
11946459--11946703	42	5.8	41	77	9	226	36	17	13	32	1.89
11946459--11946703	84	2.9	84	84	4	316	36	17	13	32	1.89
11947502--11947546	23	1.9	24	86	4	65	13	24	6	55	1.62
11948491--11948528	17	2.2	17	90	0	58	21	21	0	57	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130