genome.fa.s556.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  53  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11590266--11590422	54	2.9	55	79	8	169	44	8	10	36	1.68
11593144--11593184	21	2.0	21	85	0	55	53	7	19	19	1.68
11600524--11600604	8	10.8	8	80	12	75	81	1	8	8	0.93
11600543--11600608	35	1.9	33	84	6	87	83	1	7	7	0.87
11601589--11601724	42	3.2	41	80	11	143	22	13	24	38	1.91
11601702--11601926	41	5.5	41	78	8	210	26	16	19	37	1.93
11602159--11602297	23	6.4	21	68	22	69	33	4	2	60	1.28
11602186--11602308	46	2.6	47	82	11	139	34	4	1	59	1.29
11603140--11603471	51	6.0	54	71	10	208	47	6	10	35	1.64
11603140--11603494	55	6.4	58	71	14	234	47	7	9	34	1.64
11603179--11603526	111	3.2	107	88	5	511	48	7	10	34	1.65
11603346--11603525	55	3.4	51	73	11	164	45	8	11	34	1.71
11607726--11607810	44	2.0	43	81	6	100	40	9	17	32	1.82
11608061--11608105	23	2.0	23	95	0	81	37	22	13	26	1.91
11610124--11610154	15	2.1	15	93	0	53	83	6	9	0	0.79
11621918--11622149	116	2.0	116	97	0	437	50	8	9	32	1.64
11631593--11631630	3	12.7	3	100	0	76	34	0	0	65	0.93
11631910--11631955	3	15.0	3	86	4	56	36	2	0	60	1.09
11631977--11632049	25	2.8	26	77	10	69	64	0	0	35	0.94
11631977--11632040	20	3.4	20	68	14	55	65	0	0	34	0.93
11632276--11632323	16	3.1	16	77	17	55	37	4	8	50	1.52
11635582--11635666	34	2.5	34	86	0	116	43	9	10	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11637023--11637266	132	1.8	132	85	0	344	31	13	17	37	1.89
11637240--11637306	34	2.0	34	87	0	98	32	10	16	40	1.82
11639591--11639616	13	2.0	13	100	0	52	46	7	7	38	1.61
11643323--11644058	187	4.0	187	86	4	994	33	11	12	42	1.79
11643766--11644034	62	4.4	59	66	20	151	33	11	14	40	1.81
11643316--11644056	364	2.0	367	87	3	1060	33	11	12	42	1.78
11644599--11644664	28	2.4	28	84	0	78	25	6	27	40	1.79
11644624--11644832	12	17.1	12	67	11	66	22	10	23	43	1.83
11644699--11644947	37	6.8	37	74	6	175	21	10	23	44	1.82
11644823--11644950	38	3.4	37	87	8	179	19	8	25	46	1.78
11644923--11645042	61	2.0	62	88	1	179	20	5	25	49	1.69
11648262--11648506	126	1.9	127	82	5	309	33	17	12	35	1.88
11648262--11648553	126	2.3	126	78	8	283	33	18	13	34	1.89
11648567--11648800	123	1.9	124	82	9	300	34	18	13	34	1.89
11661609--11661641	4	8.5	4	90	6	50	81	0	18	0	0.68
11664122--11664222	53	2.0	52	83	11	129	55	4	7	31	1.50
11664197--11664915	54	13.2	53	71	14	398	51	6	8	33	1.58
11664125--11664916	111	7.3	107	74	13	522	51	6	8	33	1.58
11676006--11676047	22	2.0	22	85	4	59	61	4	9	23	1.45
11679849--11679888	18	2.2	18	90	0	62	72	2	5	20	1.15
11679601--11680170	305	1.9	306	90	1	928	35	12	13	38	1.83
11682493--11682541	7	7.3	7	78	17	50	75	4	0	20	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11682686--11682747	3	20.7	3	93	6	108	33	0	1	64	1.03
11682919--11682953	16	2.2	16	94	0	61	42	14	8	34	1.76
11682986--11683025	21	1.9	21	94	0	71	40	0	17	42	1.49
11683230--11683301	36	2.0	36	100	0	144	22	11	22	44	1.84
11690302--11690652	144	2.4	143	80	6	395	31	12	13	42	1.81
11694153--11694248	14	7.1	14	78	9	83	22	0	32	44	1.53
11694153--11694240	21	4.2	21	80	1	79	22	0	31	45	1.53
11694689--11694782	48	2.0	48	84	0	125	27	28	9	34	1.88
11696819--11696896	29	2.6	30	79	4	86	46	5	2	46	1.38
11698294--11698328	2	17.5	2	100	0	70	48	0	0	51	1.00
11699901--11699958	27	2.2	26	82	14	66	39	8	0	51	1.33
11711000--11711030	11	2.8	11	90	0	53	16	0	32	51	1.44
11711055--11711200	52	2.8	52	86	6	190	42	8	23	25	1.83
11712139--11712573	226	1.9	224	91	0	717	42	6	13	37	1.71
11713774--11713818	21	2.1	21	84	8	56	51	0	6	42	1.28
11713772--11713820	22	2.3	20	83	13	62	51	0	6	42	1.27
11715043--11716407	320	4.3	319	83	5	1360	43	16	7	32	1.76
11715043--11716436	161	8.7	160	80	5	1251	43	15	7	32	1.76
11722029--11722068	17	2.4	16	84	8	53	82	5	7	5	0.94
11724484--11724520	16	2.2	18	85	9	51	75	5	0	18	0.99
11726460--11726498	15	2.6	16	84	8	55	28	0	10	61	1.28
11742043--11742267	123	1.9	118	89	10	348	34	12	8	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11742038--11742298	66	4.2	66	85	10	270	34	11	8	45	1.71
11742348--11742386	8	5.4	8	80	20	50	79	7	0	12	0.93
11742354--11742382	13	2.2	13	100	0	58	79	6	0	13	0.93
11742348--11742400	21	2.5	20	85	11	70	79	5	1	13	0.99
11742743--11742786	20	2.2	20	92	4	72	25	15	27	31	1.96
11742844--11742908	31	2.1	32	83	13	82	29	20	23	27	1.98
11743386--11743449	23	2.8	24	76	11	62	70	4	0	25	1.06
11743411--11743451	8	4.7	9	90	6	50	70	7	0	21	1.11
11743383--11743449	35	1.9	34	82	8	82	71	4	0	23	1.04
11743405--11743449	24	1.9	23	86	13	65	68	6	0	24	1.13
11743621--11743675	1	55.0	1	81	0	65	0	0	9	90	0.44
11743624--11743674	9	5.9	9	90	9	88	0	0	9	90	0.46
11743624--11743673	17	2.9	17	100	0	100	0	0	10	90	0.47
11743613--11743673	8	7.5	8	87	10	88	0	0	11	88	0.51
11743682--11744482	42	19.4	41	91	4	1201	37	22	17	22	1.94
11743682--11744647	124	7.7	123	86	9	1260	37	22	17	22	1.94
11743682--11744647	206	4.6	206	92	5	1448	37	22	17	22	1.94
11744465--11744499	17	2.1	17	100	0	70	31	28	11	28	1.92
11744423--11744539	57	2.0	58	91	6	193	35	23	16	24	1.94
11744381--11744581	99	2.0	100	93	3	343	36	22	16	23	1.94
11744482--11744647	42	4.1	40	87	10	255	38	21	17	22	1.93
11744345--11744623	141	2.0	141	98	0	540	37	22	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11745834--11745864	8	3.9	8	100	0	62	9	12	0	77	0.99
11745858--11745919	16	3.7	17	76	10	74	4	17	0	77	0.94
11745834--11745893	8	7.9	7	83	9	57	5	15	0	80	0.88
11749725--11750182	59	7.7	56	86	10	594	34	13	8	43	1.74
11749725--11750183	117	3.9	116	89	6	658	33	13	8	44	1.74
11750262--11750300	8	5.4	8	80	20	50	79	7	0	12	0.93
11750268--11750318	13	4.0	13	82	10	61	76	5	1	15	1.07
11750262--11750300	21	1.9	20	94	5	69	79	7	0	12	0.93
11750643--11750686	20	2.2	20	92	4	72	25	15	27	31	1.96
11750719--11750766	19	2.5	19	82	0	60	22	27	29	20	1.99
11750741--11750799	31	1.9	31	86	6	84	28	22	22	27	1.99
11751233--11751318	35	2.6	33	71	20	79	58	6	0	34	1.25
11751302--11751343	9	4.7	9	91	5	59	69	9	0	21	1.17
11751300--11751343	18	2.4	19	85	11	65	68	9	0	22	1.18
11751746--11751770	10	2.5	10	100	0	50	92	0	8	0	0.40
11755765--11755802	3	12.7	3	100	0	76	31	0	0	68	0.90
11761078--11761125	25	1.9	25	95	0	87	50	2	8	39	1.44
11764530--11764573	6	7.3	6	97	0	79	18	0	47	34	1.49
11764945--11764993	18	2.7	18	83	0	71	36	22	6	34	1.79
11766267--11766410	50	2.8	52	76	12	136	26	21	7	44	1.79
11766431--11766466	11	3.3	11	84	0	54	44	30	0	25	1.54
11766819--11766903	31	2.7	31	87	0	116	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11767388--11767543	52	3.0	52	87	1	224	26	25	7	39	1.83
11769654--11769694	16	2.4	19	80	19	54	31	7	0	60	1.24
11769693--11769829	50	2.8	49	87	4	179	39	5	2	52	1.38
11770509--11770738	122	1.9	121	85	9	324	37	10	9	41	1.73
11770757--11771502	185	4.1	181	78	9	651	37	10	11	40	1.76
11771119--11771350	63	3.8	61	69	11	170	36	11	9	42	1.73
11771138--11771252	61	1.9	60	87	1	167	32	10	9	47	1.70
11771385--11771618	123	1.9	124	84	4	312	41	11	9	38	1.73
11771601--11771745	61	2.3	62	77	9	152	37	13	10	38	1.78
11773800--11773990	64	3.0	62	70	13	158	40	12	8	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130