genome.fa.s556.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  104  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20393202--20393295	16	5.7	16	75	5	64	52	2	21	24	1.58
20393251--20393295	17	2.7	16	83	10	54	55	4	20	20	1.60
20393252--20393291	18	2.3	18	86	4	55	55	5	17	22	1.61
20393306--20393374	16	4.3	16	75	12	61	44	8	13	33	1.74
20393365--20393421	16	3.7	15	69	6	51	64	5	8	21	1.41
20393354--20393422	32	2.2	31	89	2	102	59	7	8	24	1.52
20393416--20393458	16	2.8	16	85	3	61	39	6	16	37	1.75
20393411--20393467	16	3.6	16	78	2	53	50	5	12	31	1.62
20402046--20402271	122	1.9	122	83	3	303	43	11	15	29	1.82
20402442--20402875	215	2.0	215	94	2	766	38	16	18	26	1.92
20403990--20404014	1	25.0	1	100	0	50	100	0	0	0	0.00
20408220--20408255	16	2.2	16	95	0	63	30	13	25	30	1.94
20424286--20424317	15	2.1	15	94	0	55	46	0	0	53	1.00
20430099--20430145	22	2.1	22	88	7	69	55	8	2	34	1.42
20433167--20433195	14	2.1	14	100	0	58	13	0	27	58	1.36
20435390--20435432	15	2.8	16	86	6	54	41	0	0	58	0.98
20435662--20435703	18	2.3	19	88	8	61	30	7	0	61	1.22
20435878--20435903	2	13.0	2	100	0	52	50	0	0	50	1.00
20436225--20436256	14	2.4	14	94	5	57	50	0	0	50	1.00
20440003--20440097	47	2.0	47	91	0	154	37	16	15	29	1.90
20443560--20443596	18	2.0	19	89	5	58	51	0	0	48	1.00
20444415--20444459	16	2.8	17	77	16	51	66	0	8	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20446217--20446249	11	2.8	12	81	9	50	66	0	6	27	1.15
20454119--20454194	39	2.0	39	89	2	118	28	13	13	44	1.81
20456354--20456384	14	2.1	15	94	5	55	35	6	6	51	1.53
20458908--20458943	19	1.9	18	88	5	54	52	2	2	41	1.30
20472014--20472074	24	2.5	25	76	10	72	49	8	0	42	1.32
20472478--20472517	20	2.0	21	90	5	64	22	10	22	45	1.82
20474694--20474749	3	19.0	3	96	3	105	33	0	0	66	0.92
20480846--20480921	36	2.1	35	88	7	109	39	19	3	36	1.71
20483314--20483344	2	15.5	2	100	0	62	51	0	0	48	1.00
20483723--20483796	2	37.0	2	100	0	148	0	50	0	50	1.00
20483796--20483836	2	21.0	2	95	5	75	48	0	0	51	1.00
20484399--20484443	21	2.1	21	84	8	56	53	0	8	37	1.32
20487639--20487711	18	4.1	18	77	7	76	28	4	30	36	1.76
20491971--20492031	27	2.2	27	80	8	70	62	11	0	26	1.29
20492536--20492582	21	2.2	21	96	0	85	51	6	14	27	1.67
20493531--20493564	17	2.0	17	88	0	50	58	2	0	38	1.13
20494397--20494421	3	8.3	3	100	0	50	32	0	0	68	0.90
20496156--20496233	37	2.1	37	95	0	138	38	15	8	37	1.79
20499327--20499360	8	4.2	8	84	0	50	41	26	0	32	1.56
20502525--20502572	22	2.2	21	85	7	69	41	2	2	54	1.24
20503255--20503292	18	2.1	18	90	0	58	76	0	0	23	0.79
20503742--20503822	41	1.9	43	85	9	114	50	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20504731--20504773	11	3.8	11	82	14	52	74	0	0	25	0.82
20504731--20504773	19	2.6	16	82	17	52	74	0	0	25	0.82
20505643--20505678	18	1.9	19	88	5	56	47	0	2	50	1.15
20505983--20506016	17	2.1	17	88	5	52	20	5	5	67	1.33
20506693--20506752	23	2.8	22	78	14	63	61	5	0	33	1.17
20506770--20506803	14	2.4	14	90	5	50	29	2	5	61	1.34
20506780--20506817	15	2.6	15	87	4	51	31	0	2	65	1.06
20506882--20506927	23	2.0	24	86	4	67	58	4	2	34	1.30
20506596--20506983	189	2.0	188	86	6	541	44	5	4	45	1.47
20507277--20507306	12	2.6	12	94	5	53	23	6	20	50	1.71
20507642--20507683	21	2.0	21	86	4	59	40	2	0	57	1.12
20508031--20508106	32	2.4	32	84	6	93	36	7	11	43	1.71
20511996--20512045	21	2.4	21	83	9	66	64	10	0	26	1.25
20512730--20512790	27	2.2	27	80	8	70	62	11	0	26	1.29
20513292--20513338	21	2.2	21	96	0	85	51	6	14	27	1.67
20514270--20514319	17	3.1	17	82	5	59	62	2	0	36	1.07
20514270--20514317	13	3.8	12	78	13	51	62	2	0	35	1.07
20516914--20516991	37	2.1	37	95	0	138	38	15	8	37	1.79
20523272--20523318	23	2.0	23	91	0	76	42	2	2	53	1.25
20523392--20523437	24	1.9	24	82	8	58	65	0	0	34	0.93
20523919--20523957	17	2.2	18	90	4	62	35	0	0	64	0.94
20524487--20524567	41	1.9	43	85	9	114	50	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20525436--20525460	10	2.5	10	100	0	50	8	0	0	92	0.40
20525463--20525501	21	1.9	19	90	10	60	71	0	0	28	0.86
20526717--20526750	17	2.1	17	88	5	52	20	5	5	67	1.33
20527596--20527641	23	2.0	24	82	4	58	56	8	2	32	1.42
20527673--20527706	14	2.4	14	90	5	50	29	2	5	61	1.34
20527683--20527720	15	2.6	15	87	4	51	31	0	2	65	1.06
20527499--20527887	190	2.0	191	89	2	586	44	6	4	44	1.50
20527786--20527831	23	2.0	24	86	4	67	58	4	2	34	1.30
20528567--20528608	21	2.0	21	86	4	59	40	2	0	57	1.12
20531908--20531937	10	3.0	10	90	0	51	40	6	0	53	1.27
20539472--20539524	26	2.0	27	89	10	83	32	5	3	58	1.39
20539748--20539806	7	7.6	7	78	17	55	18	1	3	76	1.02
20540144--20540177	2	17.5	2	87	6	52	47	0	2	50	1.16
20540249--20540372	62	2.0	63	96	1	232	33	16	16	33	1.92
20541167--20541235	31	2.3	30	82	12	79	53	1	2	42	1.24
20543731--20543833	52	2.0	51	84	5	136	29	18	5	46	1.72
20545459--20545497	13	3.0	13	85	10	53	30	0	2	66	1.05
20548488--20548533	4	11.5	4	90	0	56	50	17	0	32	1.47
20555768--20555792	12	2.1	12	100	0	50	40	0	24	36	1.55
20555893--20555930	17	2.3	17	86	4	51	34	7	7	50	1.61
20556287--20556322	16	2.3	15	90	4	54	66	2	0	30	1.06
20556294--20556343	16	3.0	16	82	5	55	72	2	0	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20556283--20556344	26	2.2	29	78	21	71	69	3	0	27	1.04
20563302--20563368	25	2.6	25	93	6	109	52	0	0	47	1.00
20563395--20563423	14	2.0	15	93	6	51	51	0	0	48	1.00
20563736--20563790	17	3.2	16	80	14	65	54	0	1	43	1.10
20563761--20563799	17	2.3	17	86	0	51	56	0	2	41	1.13
20572621--20572645	10	2.5	10	100	0	50	12	8	0	80	0.92
20572642--20572770	30	4.3	31	76	18	103	42	2	2	52	1.26
20572640--20572762	61	2.0	64	82	12	157	42	2	2	52	1.27
20576831--20576900	35	2.0	36	91	5	117	47	5	11	35	1.64
20577591--20577622	2	16.0	2	100	0	64	50	0	50	0	1.00
20589490--20589541	7	7.4	7	82	6	52	82	0	7	9	0.84
20589486--20589541	13	4.2	13	82	11	60	82	0	7	10	0.85
20589780--20589825	20	2.4	19	85	3	56	52	13	8	26	1.69
20596130--20596530	145	2.8	145	77	5	330	38	13	15	31	1.87
20596752--20596785	13	2.6	13	100	0	68	32	8	23	35	1.86
20597036--20597223	67	2.8	67	88	0	268	38	14	12	34	1.84
20597321--20597372	22	2.4	22	75	18	63	30	15	25	28	1.96
20597445--20597498	22	2.5	22	81	0	63	33	12	25	27	1.93
20597259--20597498	127	1.9	126	83	5	315	36	12	18	32	1.89
20597518--20597649	69	1.9	70	89	4	205	37	15	10	36	1.82
20598405--20598505	44	2.3	44	88	3	143	34	13	18	32	1.91
20598392--20598551	42	3.8	43	79	8	163	34	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20598401--20598557	39	3.8	40	78	10	122	34	12	17	35	1.87
20598565--20598642	37	2.1	38	83	7	97	32	11	20	35	1.88
20598466--20598655	101	1.9	101	80	7	224	31	11	18	38	1.87
20598860--20598941	39	2.1	40	83	2	103	30	9	20	39	1.85
20599003--20599098	33	2.9	33	83	7	122	42	13	11	32	1.80
20599132--20599216	33	2.6	33	78	0	107	35	18	16	29	1.93
20599789--20599813	12	2.1	12	100	0	50	20	0	0	80	0.72
20600148--20600232	10	9.0	9	73	19	59	2	12	3	81	0.92
20601548--20601602	25	2.2	25	90	0	83	0	10	5	83	0.79
20601549--20601613	25	2.7	23	77	11	76	0	9	6	84	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130