genome.fa.s556.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  47  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11187924--11188010	44	2.0	45	83	2	113	54	4	2	39	1.34
11190184--11190222	19	2.1	18	85	4	51	46	0	0	53	1.00
11190669--11190709	20	2.0	20	86	9	57	53	0	0	46	1.00
11191863--11191936	19	4.0	18	68	16	53	45	0	1	52	1.09
11192178--11192225	23	2.0	26	84	12	66	52	2	2	43	1.24
11192251--11192300	16	3.1	17	74	8	50	48	4	2	46	1.32
11192513--11192783	10	25.1	11	65	22	62	47	2	1	49	1.21
11192561--11192790	110	2.2	107	79	11	242	48	1	1	49	1.17
11192653--11192719	30	2.2	30	82	10	75	50	0	1	47	1.10
11192702--11192806	43	2.4	42	80	12	113	47	1	0	50	1.12
11192769--11192802	17	1.9	18	88	5	52	47	2	0	50	1.16
11192721--11192786	23	2.9	23	81	0	87	45	0	0	54	0.99
11193131--11193222	4	22.5	4	70	23	59	48	2	0	48	1.13
11193131--11193235	12	8.8	12	77	19	87	49	1	0	48	1.12
11193131--11193220	36	2.7	33	79	15	103	48	2	0	48	1.13
11193151--11193232	24	3.3	24	81	11	103	50	1	0	48	1.08
11193160--11193286	15	8.2	15	74	10	80	47	1	0	51	1.10
11193131--11193286	13	11.9	13	72	17	85	48	1	0	50	1.12
11193194--11193310	61	2.0	61	80	16	138	46	3	0	50	1.18
11193614--11193657	13	3.5	12	85	14	54	47	0	0	52	1.00
11194128--11194178	20	2.5	20	75	12	52	43	1	0	54	1.11
11194616--11194643	7	4.0	7	100	0	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11194752--11194783	13	2.5	13	94	0	55	43	0	0	56	0.99
11194775--11194810	14	2.5	14	86	4	54	50	5	0	44	1.25
11194836--11194911	29	2.5	29	78	6	80	48	0	3	47	1.20
11195550--11195599	24	2.1	24	81	7	57	54	0	0	46	1.00
11195599--11195659	22	2.7	23	82	10	81	40	1	3	54	1.27
11195604--11195659	21	2.5	22	85	5	69	41	0	3	55	1.17
11195599--11195665	23	2.9	23	80	13	75	41	1	2	53	1.25
11195689--11195742	19	2.8	19	83	10	58	44	0	1	53	1.11
11195656--11195740	27	3.0	27	74	10	73	42	0	1	56	1.07
11196198--11196249	27	2.0	26	84	3	68	48	0	3	48	1.20
11196548--11196671	20	5.8	21	69	21	71	45	0	2	51	1.20
11196644--11196678	16	2.3	15	90	5	52	48	0	0	51	1.00
11197165--11197222	29	2.0	29	83	9	75	51	0	0	48	1.00
11197179--11197222	14	3.1	14	81	12	54	45	0	0	54	0.99
11197192--11197236	23	1.9	24	81	4	56	48	4	0	46	1.22
11197440--11197490	21	2.4	22	83	9	61	50	0	5	43	1.26
11197443--11197492	18	2.8	18	74	17	50	52	0	6	42	1.26
11197634--11197676	22	2.0	22	86	9	61	39	0	6	53	1.28
11197819--11197907	39	2.4	37	82	16	96	55	1	1	42	1.14
11197825--11197885	27	2.1	30	85	8	83	55	0	1	42	1.09
11197850--11197937	12	6.9	12	70	20	54	52	1	1	45	1.15
11197848--11197904	27	2.1	27	83	6	71	52	1	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11198165--11198246	5	15.8	5	75	17	53	45	0	1	53	1.08
11198185--11198250	22	3.1	23	73	20	63	45	0	0	54	0.99
11198141--11198306	57	3.0	54	77	18	146	45	0	1	52	1.16
11198191--11198277	38	2.3	37	79	13	97	44	0	1	54	1.07
11198202--11198277	19	4.2	17	69	27	50	43	0	1	55	1.08
11198144--11198304	17	9.2	17	67	18	66	45	0	1	52	1.16
11198463--11198505	13	3.6	12	85	14	54	48	2	0	48	1.14
11200015--11200058	22	2.0	22	86	8	63	40	2	0	56	1.11
11200528--11200591	20	3.2	20	73	18	53	46	1	1	50	1.20
11200568--11200689	62	1.9	62	80	11	140	48	0	0	50	1.06
11200611--11200659	17	2.8	18	84	9	50	48	0	0	51	1.00
11200611--11200647	17	2.2	17	90	0	56	51	0	0	48	1.00
11200684--11200818	23	6.2	21	71	18	91	49	0	2	46	1.22
11200749--11200806	26	2.2	27	79	14	68	51	0	1	46	1.11
11200762--11200817	27	2.1	27	86	6	78	50	0	0	50	1.00
11200776--11200815	19	2.0	20	85	4	55	52	0	0	47	1.00
11200838--11200877	20	2.0	20	95	0	71	52	0	0	47	1.00
11200770--11200874	14	7.8	13	70	15	54	51	1	1	44	1.23
11200961--11201036	33	2.4	33	84	6	95	55	0	1	43	1.08
11200963--11201018	10	5.6	10	72	16	53	58	0	0	41	0.98
11200951--11201038	30	2.8	31	79	8	99	53	0	2	44	1.13
11200969--11201064	33	2.9	32	79	13	104	57	1	1	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11203661--11203708	16	2.9	16	79	14	53	50	2	0	47	1.12
11203672--11203720	23	2.3	22	80	13	59	53	4	0	42	1.20
11203789--11203884	14	6.1	15	72	20	54	50	3	0	46	1.17
11203850--11203883	16	2.0	16	88	11	50	44	5	0	50	1.26
11203969--11204026	15	4.0	14	76	13	55	50	0	1	48	1.11
11204879--11204919	11	3.7	11	100	0	82	39	7	7	46	1.60
11205974--11206026	17	3.1	18	78	10	58	39	9	0	50	1.35
11207364--11207792	180	2.4	180	79	3	434	40	8	9	41	1.67
11207836--11208429	179	3.3	180	77	6	485	42	9	7	40	1.66
11207836--11208429	181	3.3	177	75	8	461	42	9	7	40	1.66
11208128--11208750	321	1.9	320	80	5	722	45	9	7	38	1.64
11208420--11209373	181	5.3	182	76	8	543	43	9	7	39	1.65
11208538--11209381	362	2.4	359	78	7	840	42	9	7	40	1.65
11210004--11210077	33	2.3	32	83	6	87	48	4	0	47	1.20
11210016--11210078	32	1.9	33	87	3	92	47	3	0	49	1.17
11210099--11210152	15	3.7	15	76	13	60	44	0	0	55	0.99
11210196--11210277	17	4.4	18	72	18	62	46	3	1	48	1.27
11210310--11210392	15	6.2	13	72	18	55	45	3	0	50	1.19
11210424--11210500	20	4.2	20	64	24	53	46	1	1	50	1.17
11210340--11210486	11	11.8	12	66	24	56	50	1	0	47	1.14
11210424--11210497	17	4.3	17	66	16	53	47	1	1	50	1.18
11210413--11210523	52	2.2	51	91	8	181	47	2	1	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11210413--11210554	51	2.8	51	85	9	148	47	2	2	48	1.25
11210689--11210716	14	2.0	14	100	0	56	50	0	0	50	1.00
11211837--11211891	10	5.4	10	72	20	51	50	1	0	47	1.11
11211875--11211912	14	2.7	15	80	12	53	52	0	0	47	1.00
11211881--11211945	35	1.9	33	87	12	96	46	0	3	50	1.17
11212217--11212249	16	1.9	18	88	11	52	42	0	6	51	1.26
11212307--11212364	21	3.1	18	75	18	55	48	0	3	48	1.18
11212569--11212606	20	1.9	20	88	0	58	50	2	2	44	1.30
11212810--11212848	12	3.4	11	82	10	51	48	0	2	48	1.15
11213016--11213049	12	2.8	12	91	8	52	55	0	0	44	0.99
11213011--11213051	12	2.9	14	79	20	50	56	0	0	43	0.99
11213202--11213286	43	2.0	44	83	6	111	31	9	9	49	1.67
11214091--11214116	13	2.0	13	100	0	52	61	0	0	38	0.96
11214237--11214291	25	2.2	26	87	9	80	56	0	0	43	0.99
11214326--11215538	181	6.9	180	75	11	880	42	10	7	39	1.68
11214326--11215156	357	2.3	359	80	5	937	41	10	7	40	1.69
11215568--11215596	7	4.3	7	95	4	51	58	0	0	41	0.98
11215775--11215803	15	1.9	15	100	0	58	44	0	6	48	1.29
11215932--11215970	6	6.7	6	82	5	53	48	2	2	46	1.29
11215932--11215971	17	2.3	17	86	4	53	50	2	2	45	1.28
11216864--11216925	28	2.2	29	80	11	76	56	0	1	41	1.09
11216860--11216935	39	2.0	37	85	10	100	55	0	1	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11217124--11217944	181	4.6	178	77	5	771	41	10	7	40	1.68
11217176--11217944	355	2.2	356	79	5	836	42	10	7	39	1.68
11217809--11218084	152	1.8	152	84	3	376	39	8	8	43	1.66
11218651--11218690	19	2.2	19	86	4	55	50	2	5	42	1.37
11218756--11218803	19	2.5	20	76	13	55	50	2	0	47	1.12
11220670--11220696	13	2.1	13	100	0	54	29	0	7	62	1.22
11220808--11221171	180	2.0	180	98	1	714	45	6	3	43	1.48
11221437--11221495	21	2.8	21	73	16	59	37	0	6	55	1.26
11222091--11222192	25	4.2	23	69	18	73	49	0	2	47	1.23
11222946--11222984	20	2.0	21	90	10	64	43	0	2	53	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130