genome.fa.s556.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  59  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12533648--12533678	16	1.9	16	93	0	53	80	6	0	12	0.89
12533646--12533689	23	2.0	22	86	4	61	79	6	2	11	1.01
12539870--12539894	3	8.3	3	100	0	50	68	0	0	32	0.90
12542796--12542842	18	2.6	19	78	21	64	42	0	4	53	1.20
12542796--12542845	20	2.5	19	84	15	66	42	0	4	54	1.19
12542834--12542884	16	2.9	17	85	11	68	33	0	0	66	0.92
12545244--12545273	15	1.9	16	93	6	53	23	30	0	46	1.52
12547466--12548518	323	3.3	320	80	3	1024	43	17	8	31	1.79
12547419--12548480	161	6.6	161	81	3	1007	43	17	8	31	1.79
12547548--12548442	484	1.9	480	83	1	1191	42	18	8	30	1.80
12556508--12556542	17	2.1	16	89	5	52	22	2	11	62	1.41
12566479--12566556	6	13.0	6	74	15	54	24	2	2	70	1.12
12566480--12566565	22	3.7	22	72	19	77	22	2	2	73	1.06
12566479--12566559	28	2.9	27	85	7	101	23	2	2	71	1.10
12568055--12568093	20	2.0	20	90	10	62	71	0	2	25	0.98
12568085--12568134	23	2.2	23	82	7	57	66	0	12	22	1.24
12569913--12569966	12	4.4	11	82	15	54	62	1	0	35	1.06
12569914--12569966	14	4.0	14	73	26	53	62	1	0	35	1.06
12570479--12570504	9	2.9	9	100	0	52	34	0	0	65	0.93
12576111--12576135	12	2.1	12	100	0	50	44	0	0	56	0.99
12578182--12578263	20	4.1	20	81	6	78	19	1	31	47	1.57
12578198--12578303	7	15.9	7	71	9	69	20	0	33	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12578198--12578303	13	8.0	13	71	8	88	20	0	33	45	1.58
12578204--12578327	27	4.7	27	76	10	105	20	0	33	45	1.57
12578204--12578314	53	2.1	54	81	5	127	21	0	31	45	1.58
12580493--12580541	12	3.9	12	84	7	62	14	8	26	51	1.70
12580493--12580550	25	2.3	26	82	8	66	15	8	27	48	1.74
12580494--12580550	12	4.5	12	76	14	53	15	8	26	49	1.74
12582853--12582926	11	6.6	11	77	20	57	2	18	1	77	0.97
12582874--12582923	17	2.7	19	85	11	52	4	16	0	80	0.87
12582864--12582936	33	2.2	33	83	7	87	4	17	1	76	1.01
12583404--12583464	7	8.7	7	82	12	54	0	13	3	83	0.76
12583402--12583454	22	2.4	21	78	9	61	0	15	1	83	0.74
12585622--12586562	468	2.0	468	97	0	1756	39	9	12	37	1.77
12587283--12587324	22	2.0	21	95	4	75	61	0	0	38	0.96
12587581--12587616	14	2.8	13	91	8	56	36	5	0	58	1.22
12587585--12587627	13	3.2	13	83	12	52	41	2	0	55	1.12
12587708--12587772	11	5.8	11	74	15	53	49	0	3	47	1.17
12590568--12590771	64	3.2	63	67	14	150	36	12	16	34	1.86
12590538--12590799	127	2.1	126	83	7	327	38	12	14	33	1.84
12590601--12590799	64	3.1	63	68	12	165	38	12	14	35	1.83
12594091--12594144	27	2.0	27	85	0	72	50	22	1	25	1.59
12594129--12594154	10	2.6	10	100	0	52	53	19	0	26	1.45
12594716--12595554	417	2.0	415	90	1	1306	41	10	12	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12595459--12596024	188	3.0	187	80	2	634	39	12	12	35	1.81
12595419--12595992	187	3.1	185	81	3	684	40	12	12	34	1.81
12599346--12599485	35	3.9	36	74	12	137	20	17	12	49	1.79
12600398--12600432	10	3.5	10	88	0	52	82	0	17	0	0.66
12601793--12601834	17	2.5	17	84	7	59	71	2	2	23	1.10
12601793--12601885	37	2.4	42	76	15	103	67	1	3	27	1.12
12601968--12602065	20	4.9	20	75	5	90	40	23	9	26	1.84
12602501--12602613	5	22.2	5	69	20	58	30	0	7	60	1.32
12602554--12602615	13	4.8	12	79	18	56	32	0	4	62	1.16
12603061--12603119	31	2.0	29	90	6	91	35	6	18	38	1.78
12603431--12603458	5	5.6	5	100	0	56	17	0	17	64	1.30
12606621--12606745	39	3.2	40	86	7	159	26	12	11	50	1.73
12606997--12607050	23	2.3	23	78	6	56	14	11	1	72	1.21
12617671--12618159	144	3.4	141	76	10	427	32	15	13	38	1.87
12617603--12618148	144	3.8	142	75	7	426	32	15	13	38	1.86
12621618--12621650	17	1.9	17	100	0	66	30	0	9	60	1.27
12624941--12624971	13	2.4	13	94	0	53	83	0	12	3	0.75
12624950--12624988	10	3.8	10	80	6	51	82	0	15	2	0.79
12624950--12624990	16	2.6	17	77	14	52	78	0	17	4	0.93
12626301--12626514	67	3.2	66	82	2	250	36	18	15	29	1.92
12626425--12626520	33	2.9	32	74	9	86	37	16	15	30	1.90
12627224--12627335	34	3.4	33	76	8	111	41	16	12	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12627239--12627374	34	4.1	33	77	4	130	36	16	14	32	1.90
12627550--12627597	24	2.0	24	87	0	69	29	18	14	37	1.91
12628021--12628103	33	2.5	33	86	3	105	36	18	15	30	1.92
12627987--12628171	34	5.5	34	76	7	119	35	16	16	30	1.92
12628270--12628597	35	9.2	35	70	7	176	17	19	14	48	1.82
12628272--12628565	107	2.8	106	78	1	250	18	19	14	48	1.81
12628682--12628740	10	5.8	10	77	18	68	77	20	0	1	0.85
12635468--12635868	58	6.7	58	80	10	404	35	13	8	43	1.74
12635468--12635854	120	3.3	116	85	8	473	35	13	8	42	1.74
12635462--12635911	177	2.5	176	79	13	483	35	13	8	42	1.75
12635937--12635995	19	2.9	21	85	14	79	74	0	5	20	1.00
12635944--12635996	17	2.8	18	81	15	63	73	0	3	22	0.99
12636311--12636353	21	2.0	21	95	0	77	0	46	0	53	1.00
12636862--12636912	9	5.0	10	84	15	61	78	1	0	19	0.85
12636859--12636924	13	4.8	13	75	17	55	77	3	1	18	0.98
12636862--12636924	9	6.3	9	77	15	54	77	3	1	17	0.97
12636859--12636912	23	2.4	22	84	6	72	77	1	0	20	0.86
12637049--12637137	11	8.5	11	71	25	54	75	1	2	21	0.98
12637052--12637115	13	4.6	14	80	17	64	75	1	3	20	1.03
12637082--12637162	17	5.1	15	72	18	65	77	1	2	18	0.94
12637100--12637162	23	2.8	22	81	9	74	77	1	1	19	0.93
12637079--12637162	14	5.5	13	73	24	51	78	1	2	17	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12641152--12641177	13	2.0	13	100	0	52	61	0	15	23	1.33
12641474--12641581	49	2.2	51	85	8	143	42	4	1	50	1.33
12646437--12646485	23	2.1	23	92	0	80	51	6	16	26	1.68
12652763--12652795	15	2.2	15	100	0	66	39	0	27	33	1.57
12657731--12657786	24	2.3	25	87	3	78	42	5	1	50	1.35
12657741--12657793	25	2.2	24	93	3	88	39	5	0	54	1.24
12661212--12661262	24	2.1	24	81	0	57	5	15	0	78	0.93
12661808--12661839	12	2.8	12	90	9	50	53	9	37	0	1.34
12662168--12662212	21	2.1	22	84	12	58	31	0	4	64	1.13
12663487--12663518	17	1.9	16	93	6	55	81	3	0	15	0.82
12674602--12675161	98	5.9	97	77	9	476	28	11	18	40	1.86
12674600--12675161	50	11.7	49	75	11	393	29	11	18	40	1.86
12675048--12675437	44	9.1	44	75	11	335	26	13	17	41	1.87
12674820--12675437	90	6.9	90	76	12	469	27	12	18	40	1.87
12674994--12675437	90	5.1	87	82	8	473	26	12	18	41	1.87
12675227--12675381	78	2.0	78	87	2	222	24	13	19	42	1.87
12675133--12675437	165	1.8	166	90	4	492	26	12	17	42	1.85
12675569--12675594	4	6.5	4	100	0	52	46	0	0	53	1.00
12675589--12675614	12	2.2	12	100	0	52	23	0	0	76	0.78
12676485--12676513	12	2.4	12	100	0	58	24	24	24	27	2.00
12676529--12676590	22	2.9	21	78	4	70	30	0	1	67	1.00
12682453--12682479	13	2.1	13	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12683145--12683215	36	2.0	36	91	2	117	61	12	5	19	1.50
12683952--12683994	19	2.2	19	88	12	61	34	0	0	65	0.93
12684984--12685022	21	1.9	19	85	10	51	56	2	2	38	1.27
12688544--12688684	16	8.9	16	79	3	108	48	26	1	22	1.59
12688544--12688684	31	4.5	31	77	5	131	48	26	1	22	1.59
12688622--12688694	16	4.4	16	79	8	67	46	27	4	21	1.69
12688708--12688750	15	3.0	15	83	10	63	44	32	0	23	1.54
12688654--12688841	57	3.2	57	76	15	138	46	29	1	22	1.59
12700208--12700277	12	6.1	12	73	9	56	81	2	10	5	0.96
12700208--12700277	23	3.1	21	84	11	86	81	2	10	5	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130