Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  95  of  130  ( 15485 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18638604--18638689
22
3.9
21
66
10
55
43
15
9
32
1.78
18638595--18638690
44
2.2
45
84
1
122
43
13
9
33
1.76
18638680--18638732
22
2.3
23
78
12
56
39
13
5
41
1.68
18638623--18638830
92
2.3
92
77
5
224
40
12
8
38
1.73
18638577--18638836
46
5.8
45
74
6
179
40
13
8
38
1.75
18640797--18640831
12
3.0
12
91
4
54
8
20
0
71
1.11
18644271--18644321
21
2.4
21
100
0
102
39
9
23
27
1.86
18646905--18646947
22
1.9
23
90
4
70
81
2
6
9
0.95
18646915--18646953
11
3.5
11
78
0
51
87
2
5
5
0.75
18647514--18647573
20
3.3
18
78
15
61
63
21
0
15
1.31
18647865--18647918
22
2.5
22
78
0
63
62
14
0
22
1.31
18653273--18653405
24
5.5
24
70
12
110
12
38
25
24
1.90
18653499--18653593
24
4.0
24
94
0
163
17
32
16
32
1.93
18654172--18654291
60
2.0
61
88
3
181
20
19
8
51
1.72
18659751--18659817
29
2.3
29
79
5
73
26
5
7
59
1.48
18675106--18675141
2
18.0
2
88
0
54
50
0
50
0
1.00
18675706--18675736
15
2.1
15
93
0
53
54
12
16
16
1.71
18685596--18685637
21
2.0
20
86
9
57
40
4
2
52
1.35
18685837--18685915
41
2.0
41
83
11
103
35
2
5
56
1.35
18685776--18686576
213
3.7
211
77
10
568
32
9
4
53
1.54
18685993--18686626
218
2.9
211
80
9
615
31
9
5
53
1.57
18686526--18686565
20
2.0
21
90
5
64
40
7
5
47
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18686514--18686572
21
2.7
22
76
10
68
38
6
3
50
1.45
18685795--18688171
929
2.5
932
79
7
2432
31
10
6
51
1.61
18686734--18687332
213
2.8
217
77
7
485
30
10
6
52
1.61
18687304--18687348
22
2.0
22
83
8
56
33
8
8
48
1.65
18688176--18688769
318
1.9
319
84
1
816
25
19
25
29
1.98
18694520--18694590
37
1.9
37
88
0
106
30
5
30
32
1.81
18698981--18699017
12
2.9
13
80
19
51
40
0
2
56
1.13
18709877--18709914
9
4.2
9
80
12
51
55
2
0
42
1.14
18709875--18709921
19
2.4
19
85
3
67
59
2
0
38
1.09
18709972--18710022
25
1.9
27
84
11
70
56
0
1
41
1.10
18709999--18710043
18
2.7
16
83
10
54
64
2
2
31
1.18
18710403--18710439
16
2.4
16
90
4
58
70
2
5
21
1.20
18710406--18710475
19
3.7
19
74
12
65
64
2
5
27
1.30
18710552--18710603
16
3.1
16
80
5
59
67
3
1
26
1.18
18711386--18711427
21
2.0
21
90
4
66
28
2
0
69
1.01
18711635--18711757
10
12.5
10
73
10
58
25
3
8
63
1.37
18711695--18711754
11
5.9
10
84
11
70
18
1
13
66
1.32
18711695--18711755
20
3.0
21
78
9
72
18
1
13
67
1.31
18714320--18714362
22
1.9
23
85
4
61
48
11
0
39
1.40
18714768--18714796
5
5.8
5
100
0
58
79
0
0
20
0.74
18717951--18717997
23
2.0
23
91
0
76
55
4
17
23
1.59
18724400--18724456
19
3.0
19
67
10
53
43
3
0
52
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18724614--18724651
2
19.0
2
100
0
76
50
0
0
50
1.00
18728939--18729025
45
2.0
45
81
6
106
49
0
3
47
1.18
18729045--18729105
27
2.2
29
82
11
83
55
3
1
39
1.26
18730220--18730272
22
2.3
21
79
20
54
58
5
1
33
1.32
18731401--18731459
29
2.0
29
93
0
100
30
11
25
32
1.92
18733070--18733162
29
3.3
29
75
8
84
29
8
6
55
1.55
18733267--18733321
26
2.1
26
90
6
85
36
3
0
60
1.15
18740164--18740193
11
2.8
11
95
5
53
73
0
0
26
0.84
18740162--18740235
22
3.0
25
77
15
66
63
0
2
33
1.09
18740179--18740235
22
2.5
22
82
8
69
61
0
3
35
1.13
18745774--18745805
3
10.7
3
93
0
55
28
0
3
68
1.04
18750364--18750410
7
6.7
7
77
18
53
74
2
12
10
1.16
18750364--18750405
23
1.9
21
90
9
66
76
2
11
9
1.12
18750366--18750401
15
2.3
16
90
4
56
77
2
11
8
1.08
18751864--18751928
17
3.8
17
81
0
58
40
16
9
33
1.81
18751873--18751930
17
3.4
17
80
0
71
39
18
8
32
1.82
18752268--18752683
66
6.3
65
71
8
223
20
21
14
43
1.87
18765351--18765385
12
2.8
12
91
4
52
51
2
5
40
1.40
18767054--18767105
26
2.0
26
100
0
104
23
23
23
30
1.99
18767842--18767889
19
2.5
19
77
12
53
47
12
8
31
1.71
18768529--18768555
2
13.5
2
100
0
54
51
0
0
48
1.00
18768701--18768747
2
24.0
2
83
12
62
46
2
0
51
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18769025--18769122
51
1.9
52
83
6
128
50
4
7
38
1.49
18770882--18770939
28
2.1
28
100
0
116
36
10
0
53
1.35
18772389--18772482
11
8.5
11
67
4
55
53
6
5
35
1.49
18772344--18772467
22
5.8
22
79
6
103
50
8
4
36
1.53
18772370--18772694
44
7.4
43
72
6
186
50
5
8
35
1.57
18772370--18772561
22
8.8
22
77
1
172
51
6
6
35
1.54
18772370--18772560
66
2.9
65
81
2
213
51
6
6
35
1.54
18772370--18772694
22
14.8
22
71
7
169
50
5
8
35
1.57
18772727--18772768
20
2.1
19
83
16
50
52
0
7
40
1.29
18772758--18772819
22
2.9
22
87
2
81
45
4
11
38
1.61
18772858--18773028
22
7.8
22
70
7
96
50
4
8
36
1.52
18772882--18772996
44
2.6
43
83
8
133
54
3
7
33
1.46
18772904--18773040
66
2.1
66
81
2
159
51
5
7
35
1.54
18772901--18773006
44
2.4
44
88
3
151
52
3
7
35
1.48
18772924--18773028
44
2.4
44
82
3
122
52
4
6
36
1.49
18773109--18773210
22
4.6
23
78
11
90
47
8
5
38
1.59
18773616--18773916
22
13.7
22
69
10
116
48
4
8
37
1.54
18773683--18773761
21
3.7
21
68
11
61
48
6
6
39
1.54
18773743--18773800
21
2.7
23
76
13
68
44
3
13
37
1.61
18773873--18773933
22
2.8
22
80
7
63
55
3
3
37
1.32
18773928--18773992
22
3.0
22
79
0
67
52
10
6
30
1.61
18774118--18774222
22
4.8
22
87
4
149
44
7
10
37
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18774460--18774534
21
3.5
21
68
10
53
52
9
2
36
1.48
18778976--18779004
2
15.0
2
92
7
51
51
0
48
0
1.00
18782428--18782459
3
10.7
3
100
0
64
31
0
0
68
0.90
18786884--18787167
142
2.0
142
99
0
559
42
15
13
28
1.85
18808013--18808044
16
2.0
16
100
0
64
25
18
12
43
1.85
18817807--18817882
30
2.6
30
83
6
93
34
2
5
57
1.35
18817906--18818004
29
3.4
29
83
8
119
45
0
9
45
1.35
18817908--18818032
29
4.3
30
80
10
109
43
0
11
45
1.39
18818157--18818203
17
2.7
18
76
6
60
42
0
0
57
0.98
18819870--18819906
7
5.3
7
100
0
74
13
43
16
27
1.85
18820266--18820291
10
2.6
10
100
0
52
38
0
19
42
1.51
18824044--18824088
20
2.2
20
100
0
90
31
26
15
26
1.96
18824330--18824399
22
3.6
19
78
19
65
65
0
0
34
0.93
18825147--18825215
29
2.3
30
85
7
95
49
1
2
46
1.25
18825192--18825261
32
2.2
32
84
5
88
47
0
0
52
1.00
18825205--18825263
19
3.2
18
81
9
75
50
0
0
49
1.00
18826070--18826098
14
2.0
15
93
6
51
34
0
0
65
0.93
18827361--18827541
61
3.0
59
75
16
156
28
18
11
41
1.85
18829844--18829894
25
2.0
27
81
14
63
7
11
9
70
1.33
18838643--18838735
11
7.9
12
71
20
54
75
1
5
18
1.05
18838639--18838710
20
3.5
19
70
22
56
73
1
4
20
1.07
18838645--18838734
33
2.7
35
77
8
91
75
1
5
17
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18838645--18838736
12
7.2
12
70
19
55
76
1
5
17
1.04
18839232--18839440
105
2.0
105
95
0
373
33
14
15
36
1.88
18839603--18839800
3
66.7
3
73
13
88
55
4
3
37
1.36
18841040--18841384
57
5.8
59
87
7
459
33
12
8
45
1.72
18841040--18841395
61
5.9
59
85
7
438
32
12
8
47
1.71
18841028--18841378
119
2.9
117
84
6
474
32
12
8
47
1.71
18841283--18841371
27
3.2
27
62
20
65
37
14
6
41
1.72
18841440--18841487
11
4.1
11
77
15
51
81
4
2
12
0.93
18841455--18841506
19
2.7
18
85
8
59
78
5
7
7
1.08
18841993--18842046
25
2.2
24
83
6
63
40
18
5
35
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130