genome.fa.s556.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  65  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13648601--13648659	6	9.8	6	82	10	68	79	1	0	18	0.81
13648590--13648659	23	3.0	23	80	15	81	78	2	0	18	0.87
13648591--13648658	25	2.4	27	79	20	77	79	2	0	17	0.86
13648599--13648657	17	3.4	17	86	9	75	79	1	0	18	0.81
13648601--13648659	13	4.9	12	78	14	68	79	1	0	18	0.81
13648836--13649091	41	6.1	41	87	1	305	36	21	16	24	1.94
13650106--13650147	7	5.7	7	86	10	57	14	9	0	76	1.02
13650097--13650151	23	2.3	24	90	3	85	16	9	0	74	1.06
13650105--13650140	16	2.2	16	95	0	63	13	8	0	77	0.98
13657387--13658195	59	13.7	60	82	10	927	34	12	7	44	1.70
13657565--13657664	27	3.5	27	65	12	74	36	13	5	46	1.64
13658211--13658301	23	4.1	22	73	23	66	75	2	6	15	1.10
13658221--13658301	11	7.5	10	76	14	63	76	2	6	14	1.08
13658216--13658280	21	3.0	20	76	24	62	75	3	7	13	1.14
13658218--13658298	27	2.9	27	78	15	76	76	2	6	14	1.08
13659192--13659242	20	2.5	21	90	6	86	70	7	11	9	1.33
13659249--13659326	21	3.8	21	72	12	72	69	1	3	25	1.13
13659249--13659348	43	2.3	46	84	10	129	68	2	4	26	1.18
13659296--13659327	13	2.5	13	94	0	55	75	0	0	25	0.81
13659259--13659323	10	6.2	10	73	16	51	70	1	3	24	1.10
13659413--13659458	9	4.9	10	80	20	55	73	6	0	19	1.04
13659436--13659485	6	8.7	6	78	12	52	80	4	0	16	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13659434--13659484	17	3.1	17	81	13	70	78	3	0	17	0.90
13659372--13659484	33	3.1	35	80	14	106	69	5	1	23	1.18
13660121--13660145	13	1.9	13	100	0	50	8	4	0	88	0.64
13660475--13660532	22	2.6	22	81	8	64	3	18	3	74	1.11
13668165--13668468	145	2.1	145	80	4	346	40	10	13	34	1.80
13670488--13670548	26	2.3	27	81	16	74	59	0	3	37	1.14
13677855--13677892	19	2.0	19	89	0	58	26	0	10	63	1.27
13681683--13681720	3	12.7	3	100	0	76	31	0	0	68	0.90
13685700--13685750	26	2.0	26	88	0	75	11	27	5	54	1.59
13686071--13686133	27	2.3	26	81	5	72	25	17	7	49	1.74
13688749--13688810	28	2.2	28	85	5	81	37	3	6	53	1.43
13689645--13689682	16	2.3	17	90	4	60	5	5	5	84	0.88
13704729--13704758	2	15.0	2	100	0	60	50	0	0	50	1.00
13704805--13704866	25	2.4	26	76	10	65	33	1	17	46	1.58
13706258--13706287	1	30.0	1	100	0	60	100	0	0	0	0.00
13716250--13716306	30	1.9	30	96	3	107	28	1	3	66	1.18
13716461--13716502	18	2.3	18	87	0	57	19	4	0	76	0.96
13716473--13716506	10	3.6	10	84	15	54	17	0	0	82	0.67
13718005--13718034	13	2.2	14	94	5	53	3	0	13	83	0.77
13718118--13718346	104	2.2	104	80	3	255	31	15	15	36	1.90
13718237--13718478	126	1.9	126	84	5	319	33	17	13	35	1.88
13718964--13719015	6	8.8	6	81	12	63	1	13	0	84	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13718942--13719025	17	4.9	16	71	16	62	3	13	1	82	0.86
13718942--13719025	23	3.7	22	79	9	80	3	13	1	82	0.86
13718943--13719002	20	2.9	19	81	16	59	3	11	1	83	0.84
13727542--13727598	30	1.9	30	96	3	107	28	1	3	66	1.18
13727765--13727814	9	5.6	9	80	17	59	18	2	0	80	0.82
13727765--13727796	16	2.0	16	100	0	64	18	0	0	81	0.70
13727762--13727817	20	2.9	19	87	10	71	21	1	0	76	0.87
13727854--13727907	3	19.0	3	85	14	71	29	0	1	68	1.00
13729051--13729143	37	2.5	37	75	3	87	18	5	6	69	1.29
13732310--13732382	30	2.4	30	86	0	92	39	9	5	45	1.60
13735152--13735218	29	2.3	30	89	2	100	41	7	2	47	1.47
13739656--13739684	12	2.5	12	94	5	51	31	0	0	68	0.89
13740221--13740245	9	2.8	9	100	0	50	72	0	0	28	0.86
13742429--13742481	22	2.4	22	93	6	90	50	0	0	49	1.00
13742470--13742504	18	1.9	18	88	0	52	62	0	0	37	0.95
13742616--13742659	21	2.1	21	95	0	79	31	22	27	18	1.97
13756528--13756614	45	1.9	46	84	11	117	41	4	14	39	1.67
13762074--13762126	27	2.0	27	92	0	88	32	3	9	54	1.50
13762100--13762227	21	6.0	21	74	6	105	37	6	9	46	1.61
13762182--13762225	23	1.9	23	85	0	61	34	9	11	45	1.72
13762508--13763289	22	35.3	22	69	9	250	37	8	6	47	1.61
13763075--13763241	67	2.5	67	81	6	171	38	6	5	49	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13762987--13763289	111	2.7	110	75	10	242	37	6	5	49	1.53
13763878--13763911	16	2.2	16	89	5	52	23	0	14	61	1.33
13764453--13764514	22	2.7	23	82	9	74	17	4	4	72	1.20
13764452--13764514	23	2.7	23	83	11	67	17	4	4	73	1.19
13764451--13764514	24	2.7	24	79	13	62	17	4	4	73	1.18
13769839--13770058	46	4.8	45	76	12	196	36	3	15	44	1.64
13769881--13770055	93	1.9	91	84	4	235	36	3	14	45	1.62
13769839--13770171	22	14.6	22	70	8	146	35	3	15	46	1.63
13769882--13770055	91	1.9	92	83	3	226	35	3	14	45	1.62
13769984--13770151	68	2.5	70	77	8	177	33	3	15	47	1.63
13770086--13770211	45	2.8	46	83	8	143	34	3	15	46	1.64
13770388--13770436	17	2.9	17	87	3	73	42	6	6	44	1.54
13770658--13770711	18	2.9	19	74	23	60	31	3	12	51	1.57
13770702--13770759	18	3.3	18	72	11	57	34	12	13	39	1.82
13771243--13771291	21	2.5	19	73	6	53	69	6	12	12	1.35
13772237--13772263	14	1.9	14	100	0	54	25	7	14	51	1.68
13772269--13772308	19	2.2	18	86	4	53	32	2	7	57	1.40
13772261--13772310	19	2.5	20	71	12	50	34	2	8	56	1.40
13772519--13772877	178	2.0	177	94	1	630	47	7	8	36	1.63
13772832--13772865	18	1.9	17	94	5	59	47	5	8	38	1.59
13773576--13773637	22	2.8	22	73	9	63	37	8	9	45	1.67
13773621--13773706	22	3.9	22	72	11	68	41	5	5	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13773651--13773684	11	3.1	11	88	12	52	35	11	0	52	1.38
13773707--13774086	22	17.4	22	69	10	100	36	7	6	50	1.55
13774039--13774111	22	3.3	21	77	12	67	36	10	2	49	1.53
13774118--13774226	11	9.9	11	70	15	55	42	7	2	47	1.45
13774118--13774222	22	4.8	22	81	4	88	42	7	2	46	1.47
13774142--13774349	22	9.5	22	70	6	89	34	8	4	52	1.52
13774338--13774404	21	3.1	21	80	18	84	38	11	5	43	1.66
13775521--13775582	30	2.1	30	96	0	115	56	9	6	27	1.56
13776680--13776724	17	2.7	17	79	3	56	46	2	0	51	1.13
13776680--13776742	33	1.9	32	83	3	81	47	3	0	49	1.17
13778806--13778830	4	6.2	4	100	0	50	52	24	0	24	1.48
13780339--13780382	3	14.7	3	100	0	88	68	0	0	31	0.90
13780408--13780510	30	3.5	29	81	7	109	38	7	3	49	1.50
13781539--13781595	22	2.6	22	80	2	62	26	1	24	47	1.62
13781606--13781760	51	3.0	51	84	6	161	41	8	23	27	1.83
13782612--13782653	11	3.8	11	93	0	75	21	0	28	50	1.49
13782611--13782653	22	2.0	22	100	0	86	23	0	27	48	1.51
13782678--13782803	52	2.4	52	88	6	177	43	8	20	26	1.81
13782710--13782832	52	2.4	51	85	8	160	38	7	23	30	1.82
13785005--13785052	2	24.5	2	91	4	80	0	50	0	50	1.00
13785708--13785739	16	2.1	15	94	5	55	9	6	12	71	1.29
13792900--13792935	6	6.0	6	100	0	72	66	0	16	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13793216--13793261	17	2.6	18	83	13	60	65	2	26	6	1.28
13793216--13793258	19	2.4	19	85	11	56	65	2	25	6	1.30
13805763--13805813	11	4.5	11	76	11	50	66	0	1	31	1.03
13818946--13818991	19	2.4	20	85	7	60	67	0	2	30	1.03
13819717--13819775	23	2.9	20	70	18	50	55	1	5	37	1.32
13819944--13819985	16	2.8	16	75	10	52	50	0	0	50	1.00
13820059--13820106	24	2.0	24	83	0	60	43	2	2	52	1.24
13820156--13820240	38	2.2	39	83	6	111	51	3	2	42	1.31
13820195--13820239	17	2.5	18	82	7	56	51	4	2	42	1.34
13820141--13820238	38	2.5	38	81	8	108	50	4	2	43	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130