genome.fa.s556.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  45  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10664106--10664144	18	2.2	18	90	0	60	25	5	5	64	1.35
10664539--10664607	20	3.4	20	78	6	59	21	0	26	52	1.47
10664997--10665080	6	13.5	6	76	15	64	23	1	3	71	1.09
10664997--10665081	13	6.8	13	75	17	65	23	1	3	71	1.08
10665001--10665073	19	3.9	19	72	22	66	23	0	4	72	1.01
10665185--10665221	16	2.2	17	90	4	58	81	2	5	10	0.96
10670424--10670461	19	2.0	19	89	0	58	36	21	31	10	1.87
10678519--10678572	21	2.6	21	71	11	56	31	24	29	14	1.95
10679962--10680017	27	2.1	27	90	6	87	46	19	26	7	1.76
10691617--10691669	27	2.0	27	88	0	79	41	33	15	9	1.79
10711159--10711646	248	2.0	247	83	3	624	28	16	26	29	1.97
10717689--10717713	13	1.9	13	100	0	50	36	16	24	24	1.94
10719925--10719971	25	1.9	25	91	4	78	31	19	17	31	1.94
10721098--10721141	3	15.0	3	90	4	72	31	2	0	65	1.05
10721999--10722030	16	2.1	16	94	5	57	6	34	0	59	1.23
10739941--10739997	28	2.0	28	93	0	96	38	17	3	40	1.67
10740406--10740449	22	2.0	22	95	0	79	43	13	11	31	1.80
10744102--10744139	19	2.0	19	100	0	76	36	21	21	21	1.95
10744393--10744436	22	2.0	22	95	0	79	43	13	11	31	1.80
10745597--10745631	11	3.2	11	87	0	52	77	0	22	0	0.78
10746674--10746805	67	2.0	67	95	0	237	35	15	12	36	1.85
10746999--10747050	25	2.1	25	88	0	77	38	9	19	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748897--10748960	27	2.4	27	91	0	101	18	1	42	37	1.60
10751786--10751840	27	2.2	25	78	15	60	20	0	40	40	1.52
10751793--10751851	27	2.1	28	93	3	102	22	0	37	40	1.54
10753660--10753719	26	2.3	26	100	0	120	21	10	40	28	1.85
10756513--10756626	45	2.5	45	78	2	113	23	28	21	25	1.99
10756771--10756863	45	2.1	45	81	4	107	24	27	19	27	1.99
10775421--10775473	27	2.0	27	85	7	72	11	18	30	39	1.86
10789330--10789406	37	2.1	37	82	0	91	25	22	32	19	1.97
10790740--10790790	25	2.0	25	100	0	102	50	11	17	19	1.76
10795171--10795217	22	2.1	22	92	0	76	31	25	12	29	1.93
10802320--10802409	30	3.0	30	96	0	162	25	22	17	34	1.96
10822885--10822910	12	2.2	12	100	0	52	42	0	15	42	1.47
10847361--10847394	17	2.0	17	100	0	68	17	41	11	29	1.85
10858136--10858166	14	2.2	14	100	0	62	19	16	29	35	1.93
10871396--10871442	17	2.8	17	83	0	58	38	19	19	23	1.93
10872557--10872627	31	2.3	31	87	0	106	26	21	32	19	1.97
10881597--10881668	36	2.0	36	86	10	103	27	22	29	20	1.99
10895395--10895503	45	2.4	45	81	3	130	24	19	30	25	1.98
10908841--10908926	45	1.9	45	82	0	109	31	19	26	22	1.98
10918523--10918635	44	2.5	44	84	1	145	25	19	32	22	1.97
10919180--10919239	26	2.3	27	82	2	68	63	6	5	25	1.39
10928719--10928812	45	2.1	46	83	2	118	23	22	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10952262--10952302	19	2.2	19	86	0	55	26	9	46	17	1.79
10979083--10979134	20	2.6	20	90	0	77	25	21	15	38	1.92
10992101--10992146	24	1.9	24	95	0	83	45	21	15	17	1.85
11021911--11022064	83	1.9	83	88	2	238	28	21	16	33	1.95
11053413--11053443	13	2.4	13	100	0	62	32	0	22	45	1.53
11095584--11098970	181	18.9	181	74	8	2159	42	9	7	40	1.65
11096110--11096149	20	2.0	21	85	9	57	32	12	7	47	1.69
11096116--11098970	363	8.0	360	75	8	2029	42	9	7	40	1.66
11097505--11097537	17	2.0	17	88	5	50	39	12	0	48	1.40
11097339--11097661	168	1.9	170	85	5	449	44	8	4	41	1.57
11095583--11098911	531	6.2	527	74	9	1909	42	9	7	40	1.65
11098971--11103746	181	26.6	179	74	8	2963	40	7	9	41	1.67
11098987--11111088	902	13.5	897	70	12	4174	40	8	9	41	1.67
11103269--11103608	165	2.1	166	81	5	384	39	7	11	41	1.69
11104743--11110289	181	30.9	181	74	7	3222	40	8	10	41	1.68
11104820--11111088	357	17.5	358	73	9	3266	40	8	9	41	1.68
11108045--11108083	18	2.3	17	86	8	53	43	5	15	35	1.69
11110302--11111088	180	4.4	177	78	9	696	41	9	8	40	1.68
11111102--11113396	357	6.4	357	74	9	996	39	7	9	43	1.65
11111067--11113404	538	4.3	536	75	9	1830	39	7	9	43	1.66
11111067--11113396	181	13.0	180	75	8	1572	39	7	9	43	1.66
11113297--11113535	128	1.9	129	84	4	331	43	7	8	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11113409--11115755	356	6.6	352	75	11	1671	39	8	10	42	1.69
11113408--11115755	180	13.2	179	74	9	1566	39	8	10	42	1.69
11113395--11115677	536	4.3	529	76	9	1835	39	8	10	42	1.69
11114699--11115743	181	5.8	178	76	7	924	40	8	9	41	1.68
11114707--11115743	361	2.9	352	77	8	902	40	8	9	41	1.68
11117071--11117103	17	2.0	17	94	5	59	39	6	0	54	1.25
11116898--11118640	180	9.7	181	77	5	1284	42	9	7	40	1.66
11117258--11118489	361	3.4	358	78	6	1026	42	10	7	39	1.68
11117156--11118640	361	4.1	361	76	6	911	43	9	7	38	1.67
11118804--11119443	180	3.6	178	75	8	528	39	8	10	41	1.70
11118963--11119597	180	3.6	175	78	10	436	41	7	9	41	1.66
11120412--11122717	181	12.8	180	74	7	1376	40	8	9	42	1.67
11121406--11121452	17	2.7	18	77	12	53	46	8	2	42	1.46
11121130--11122353	361	3.4	361	77	6	882	40	8	8	42	1.65
11121477--11122209	182	4.0	184	77	5	431	41	7	8	42	1.65
11122234--11122277	22	2.0	22	82	8	54	36	9	4	50	1.55
11122799--11123573	181	4.3	181	77	4	628	38	7	12	41	1.72
11124261--11127861	181	20.3	174	70	14	685	39	7	10	42	1.68
11123641--11129557	362	16.6	354	71	11	1365	39	7	10	42	1.68
11123602--11125282	180	9.4	179	76	7	1119	40	8	10	41	1.68
11123622--11125109	180	8.3	180	76	7	1136	40	8	9	41	1.68
11125272--11129628	181	24.4	179	76	8	3156	39	7	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11127977--11129628	180	9.2	178	74	10	915	40	7	9	42	1.65
11129503--11129786	156	1.8	158	80	4	342	37	9	9	43	1.70
11130385--11130418	17	2.0	17	88	0	50	50	2	2	44	1.32
11130191--11131018	180	4.6	181	75	6	590	38	9	10	42	1.71
11131072--11133547	181	13.9	180	73	8	1279	39	8	9	42	1.68
11133647--11135519	182	10.4	180	74	8	1218	40	8	9	41	1.68
11134269--11135427	539	2.1	538	82	3	1375	39	8	10	40	1.71
11135462--11135576	55	2.1	55	85	1	151	45	6	8	39	1.62
11135521--11136549	181	5.7	177	74	10	762	40	7	10	40	1.68
11136146--11136178	18	1.9	17	88	11	50	48	3	6	42	1.43
11135521--11136547	361	2.9	356	78	7	961	40	7	10	40	1.68
11136633--11136768	65	2.1	66	88	2	202	41	6	13	38	1.71
11136732--11138512	181	9.9	179	77	7	1517	39	8	10	42	1.68
11136732--11138512	361	5.0	357	78	7	1517	39	8	10	42	1.68
11139061--11142526	181	19.2	180	74	9	2159	41	8	8	40	1.66
11139498--11139530	18	1.9	17	88	11	50	39	6	6	48	1.53
11141053--11141104	23	2.2	24	90	6	81	57	0	9	32	1.31
11140870--11141270	204	2.0	203	84	4	522	42	6	9	40	1.65
11142390--11142669	143	2.0	142	85	0	380	39	10	8	41	1.70
11142542--11143142	322	1.9	320	84	3	821	41	11	7	39	1.68
11142835--11143842	181	5.6	179	81	5	965	39	10	8	41	1.70
11142823--11143842	361	2.8	358	80	5	1017	40	10	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11143914--11144965	179	5.8	181	76	7	861	42	9	8	39	1.68
11143914--11145615	179	9.6	177	73	12	783	42	9	8	39	1.68
11143914--11145621	359	4.8	354	75	10	1060	42	9	8	39	1.68
11144975--11145615	182	3.6	177	77	9	506	42	9	7	39	1.67
11146382--11146429	16	2.7	18	75	12	55	45	10	8	35	1.68
11146347--11147853	180	8.4	179	73	8	927	40	7	10	40	1.69
11146347--11151257	181	27.4	178	73	10	1883	40	8	10	41	1.69
11146346--11150436	542	7.6	540	74	9	1774	40	8	9	41	1.69
11146889--11147573	182	3.8	180	79	8	508	40	7	11	40	1.69
11147866--11151249	181	18.7	180	76	8	2279	40	8	9	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130