genome.fa.s556.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  23  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6090132--6090188	24	2.3	24	85	8	71	43	1	1	52	1.21
6094034--6094082	24	2.0	24	96	0	89	24	0	16	59	1.37
6097396--6097488	46	2.0	46	91	4	152	41	15	3	39	1.63
6100513--6100569	24	2.5	22	79	17	64	45	0	0	54	0.99
6100520--6100566	24	2.0	24	87	8	69	42	0	0	57	0.98
6106512--6106792	64	4.4	64	76	6	232	35	13	12	38	1.82
6106497--6106792	128	2.3	128	82	6	334	34	13	12	39	1.83
6106508--6106843	64	5.2	62	72	10	230	35	13	12	38	1.81
6106497--6106869	128	2.9	126	78	9	328	35	13	12	39	1.82
6106902--6106984	43	1.9	43	85	0	112	39	10	10	38	1.75
6107681--6107786	53	2.0	53	94	0	185	32	11	8	48	1.69
6108629--6108663	15	2.2	16	90	5	54	40	5	0	54	1.24
6111302--6111344	17	2.5	17	76	0	50	81	4	11	2	0.93
6111988--6112037	22	2.3	22	96	0	91	44	20	14	22	1.86
6115799--6115852	3	17.3	3	92	7	90	33	1	1	62	1.16
6116545--6116586	23	1.9	21	90	9	66	16	7	0	76	1.00
6116545--6116592	23	2.1	22	85	11	62	16	6	2	75	1.11
6116602--6116634	15	2.3	14	94	5	57	9	0	21	69	1.15
6116746--6116789	18	2.4	18	82	10	54	45	0	0	54	0.99
6129408--6129460	3	17.0	3	92	7	88	32	1	1	64	1.15
6130228--6130277	23	2.2	23	85	7	66	14	4	4	78	1.05
6134546--6134577	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6136335--6136368	17	2.0	17	94	0	59	67	5	5	20	1.33
6137520--6137717	104	1.9	104	84	5	265	33	15	12	38	1.85
6137624--6137885	62	4.2	61	77	10	226	34	12	12	40	1.81
6141602--6141640	2	19.5	2	100	0	78	51	0	0	48	1.00
6141638--6141677	4	10.0	4	94	0	71	50	2	25	22	1.62
6142855--6142930	27	3.0	27	70	18	72	52	1	0	46	1.08
6143759--6143788	15	1.9	16	93	6	53	50	3	0	46	1.18
6144006--6144083	34	2.3	34	86	0	102	30	17	14	37	1.90
6145179--6145238	18	3.3	18	73	13	68	40	6	31	21	1.79
6146203--6146317	33	3.5	33	75	2	97	46	2	27	22	1.65
6146324--6146434	39	2.8	39	87	0	141	34	9	26	29	1.89
6148583--6148635	25	2.1	25	96	0	97	33	15	15	35	1.88
6151325--6151416	40	2.3	40	83	5	116	51	15	11	21	1.75
6151418--6151457	21	1.9	21	89	0	62	52	22	5	20	1.65
6152603--6152627	2	12.5	2	100	0	50	48	0	0	52	1.00
6154297--6154359	24	2.6	24	79	18	69	58	7	1	31	1.36
6157049--6157494	224	2.0	224	95	0	811	34	17	17	30	1.93
6166866--6166902	12	3.2	12	85	11	51	2	18	0	78	0.87
6169343--6169396	27	2.0	27	100	0	108	40	14	0	44	1.46
6169656--6169687	2	16.0	2	100	0	64	50	0	0	50	1.00
6170222--6170285	26	2.4	27	82	7	78	53	3	7	35	1.46
6172621--6172650	10	3.1	10	95	4	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6172623--6172652	9	3.2	9	95	4	51	36	0	0	63	0.95
6174706--6174748	19	2.3	19	84	8	52	53	11	6	27	1.63
6175120--6175157	15	2.4	17	82	13	53	65	0	2	31	1.06
6178142--6178178	7	5.4	7	84	15	51	16	0	8	75	1.02
6178142--6178193	21	2.5	20	85	14	70	19	0	5	75	1.01
6178141--6178185	13	3.4	14	85	14	60	20	0	6	73	1.05
6178141--6178192	13	3.8	13	80	19	54	21	0	5	73	1.04
6178300--6178379	10	7.9	10	74	12	56	33	3	1	61	1.22
6178322--6178421	21	5.0	21	80	10	111	30	4	1	65	1.18
6178321--6178419	41	2.5	40	86	8	130	30	4	1	64	1.18
6178321--6178422	20	5.1	20	81	7	109	29	3	0	65	1.17
6178324--6178421	40	2.4	41	86	8	130	29	4	1	65	1.18
6179240--6179276	11	3.1	12	88	11	58	18	0	0	81	0.70
6179240--6179276	19	2.0	18	94	5	65	18	0	0	81	0.70
6179294--6179507	58	3.7	58	88	3	288	43	6	13	37	1.68
6181583--6181620	19	2.0	19	94	0	67	23	5	28	42	1.76
6190983--6191195	42	5.1	41	79	11	211	26	13	21	38	1.91
6191139--6191255	60	2.0	58	91	3	189	27	15	20	36	1.93
6191197--6191429	45	5.4	43	81	8	251	25	12	21	41	1.88
6191074--6191341	144	1.9	143	84	10	366	26	13	20	39	1.90
6191223--6191429	87	2.4	87	89	3	310	25	11	22	41	1.87
6191627--6191666	19	2.2	18	95	4	71	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6191698--6191751	12	4.2	12	80	7	54	33	3	1	61	1.25
6191689--6191741	4	13.0	4	76	11	54	30	3	0	66	1.10
6191772--6191822	14	3.8	13	80	12	50	37	3	1	56	1.29
6191796--6191895	21	4.9	21	73	8	89	27	5	3	65	1.28
6191796--6191912	41	2.8	40	77	13	112	24	5	3	66	1.28
6192797--6192903	5	20.8	5	80	17	98	19	2	0	77	0.89
6192796--6192903	6	18.7	6	81	12	95	19	2	0	77	0.88
6192798--6192908	58	2.0	55	89	8	170	19	3	0	76	0.93
6192921--6193135	58	3.7	59	81	8	251	43	6	11	39	1.65
6192987--6193076	28	3.2	28	66	18	78	43	4	12	40	1.62
6192921--6193135	116	1.8	117	86	3	308	43	6	11	39	1.65
6198465--6198947	213	2.3	212	79	7	485	52	7	9	30	1.61
6199126--6199708	221	2.7	213	79	9	610	53	5	9	31	1.57
6199121--6199884	215	3.5	215	76	10	667	53	6	8	31	1.57
6198147--6199960	934	1.9	932	81	5	2102	51	6	10	31	1.60
6198078--6200315	940	2.4	929	79	7	2128	51	6	10	31	1.61
6200251--6200302	21	2.5	20	76	14	61	50	1	5	42	1.37
6200503--6200533	14	2.1	15	94	5	55	58	0	0	41	0.98
6201801--6201850	23	2.2	23	85	7	66	66	4	6	24	1.32
6202162--6202231	25	2.9	25	80	14	76	35	4	7	52	1.48
6207384--6207410	2	13.5	2	100	0	54	51	0	0	48	1.00
6221683--6221740	30	1.9	30	85	0	80	39	18	18	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6244034--6244066	3	11.0	3	100	0	66	0	33	0	66	0.92
6248969--6248994	12	2.2	12	100	0	52	42	42	7	7	1.62
6259327--6259394	25	2.8	24	78	8	66	54	0	0	45	0.99
6259267--6259396	26	4.8	27	70	16	92	51	0	1	46	1.10
6259706--6259751	16	2.9	15	78	9	56	39	0	0	60	0.97
6266069--6266121	22	2.4	21	93	6	88	50	0	0	49	1.00
6283090--6283114	6	4.2	6	100	0	50	48	0	16	36	1.46
6291224--6291294	34	2.1	34	91	0	115	35	7	26	30	1.83
6294453--6294509	27	2.1	27	100	0	114	22	26	10	40	1.86
6297853--6297919	25	2.6	27	80	17	88	38	4	2	53	1.36
6297999--6298024	2	13.0	2	100	0	52	50	0	0	50	1.00
6298319--6298388	27	2.6	27	72	6	70	32	4	0	62	1.14
6300106--6300146	3	13.7	3	94	0	73	65	2	0	31	1.05
6305652--6305686	18	1.9	18	88	0	52	17	2	0	80	0.84
6309612--6309638	7	3.9	7	100	0	54	11	0	29	59	1.32
6323787--6323964	85	2.1	86	95	1	322	28	21	16	33	1.95
6325155--6325188	17	2.0	17	100	0	68	29	17	23	29	1.97
6329452--6329488	20	1.9	18	89	10	56	59	0	0	40	0.97
6334354--6334518	58	2.8	60	79	10	187	36	12	5	45	1.65
6334349--6334523	59	3.0	58	81	8	194	36	11	5	47	1.62
6334522--6334783	57	4.5	58	71	13	184	37	12	3	46	1.60
6334338--6334715	189	2.0	189	81	11	445	34	12	4	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6335308--6335356	22	2.2	23	82	10	57	65	12	2	20	1.35
6335875--6336020	43	3.3	43	86	2	202	44	21	12	21	1.85
6337103--6337135	15	2.3	15	89	5	50	51	15	9	24	1.72
6337091--6337172	42	1.9	44	85	5	114	48	15	10	24	1.77
6337063--6337297	44	5.3	44	79	6	217	44	17	13	24	1.84
6337245--6337449	42	4.9	42	77	11	188	45	13	15	25	1.83
6338482--6338516	9	4.0	9	92	7	63	11	8	0	80	0.92
6338467--6338514	17	2.8	18	90	6	73	8	8	0	83	0.82
6347335--6347362	14	2.0	14	100	0	56	28	35	14	21	1.92
6348909--6349214	153	2.0	152	96	0	558	40	8	10	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130