genome.fa.s556.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  120  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23838071--23838113	23	1.9	22	85	4	59	44	0	9	46	1.35
23838071--23838121	22	2.3	23	82	3	59	45	0	9	45	1.36
23838379--23838411	11	3.0	11	91	8	50	48	0	0	51	1.00
23841271--23841313	11	3.9	11	87	0	68	18	0	30	51	1.47
23841270--23841316	22	2.1	22	96	0	85	23	0	29	46	1.52
23841337--23841492	52	3.0	51	85	4	179	39	8	26	26	1.84
23847096--23847147	27	1.9	27	84	0	68	55	3	7	32	1.46
23850912--23850952	12	3.4	12	86	6	57	60	0	0	39	0.96
23853169--23853199	15	2.1	15	93	0	53	22	0	22	54	1.44
23853174--23853208	15	2.3	15	90	0	52	20	0	28	51	1.47
23853175--23853292	49	2.4	49	78	4	121	15	0	31	52	1.48
23853219--23853277	21	2.7	22	78	2	66	15	1	30	52	1.52
23853226--23853277	21	2.4	21	87	3	68	13	1	30	53	1.50
23853261--23853398	54	2.4	58	82	10	153	20	0	28	51	1.48
23853440--23853473	16	2.2	16	89	5	52	14	0	41	44	1.45
23853586--23853641	3	19.0	3	92	3	96	32	1	0	66	1.03
23862438--23862464	9	3.0	9	100	0	54	22	11	44	22	1.84
23863814--23864149	97	3.5	97	82	2	397	29	11	21	38	1.88
23863814--23864149	48	6.9	48	82	2	343	29	11	21	38	1.88
23863849--23864134	144	2.0	147	85	3	391	29	12	20	37	1.90
23865280--23865649	208	1.8	202	80	10	446	44	8	12	33	1.74
23865659--23865698	10	4.1	10	96	3	73	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23866325--23866447	53	2.3	53	82	1	138	29	18	20	31	1.96
23866374--23866534	87	1.9	86	80	3	189	29	19	19	31	1.97
23866322--23866633	140	2.2	140	86	2	430	29	19	18	32	1.96
23866567--23866632	33	2.0	33	85	11	91	31	21	18	28	1.96
23867510--23867574	23	2.8	23	86	4	87	7	12	1	78	1.02
23870321--23870390	4	17.5	4	75	5	61	45	2	22	28	1.67
23870321--23870383	28	2.2	28	85	0	81	47	3	20	28	1.65
23870321--23870390	16	4.4	16	77	0	68	45	2	22	28	1.67
23872019--23872061	20	2.2	19	84	12	52	58	16	0	25	1.38
23873949--23874234	29	10.0	30	73	14	167	21	1	31	46	1.60
23873942--23874093	81	1.9	81	90	2	243	22	0	31	45	1.57
23874059--23874144	8	11.4	8	68	9	56	24	0	25	50	1.50
23874165--23874216	13	3.8	13	71	14	50	19	0	28	51	1.47
23874345--23874384	3	14.0	3	84	10	57	30	2	0	67	1.04
23879481--23879531	20	2.6	19	78	6	57	3	5	13	76	1.11
23883078--23883127	22	2.3	22	85	0	64	48	0	2	50	1.12
23884828--23884852	4	6.2	4	100	0	50	24	0	0	76	0.80
23884848--23884873	3	8.7	3	100	0	52	30	0	0	69	0.89
23890299--23890392	21	4.3	23	73	20	76	72	1	18	8	1.16
23890303--23890412	19	6.7	16	70	24	61	74	0	16	8	1.10
23890345--23890424	19	4.1	20	77	16	71	76	0	17	6	0.99
23891478--23891555	21	3.7	21	78	1	84	39	8	11	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23891697--23891734	16	2.4	16	86	0	58	31	18	13	36	1.89
23891922--23892188	42	6.2	42	84	8	315	27	12	13	46	1.80
23891916--23892176	92	3.0	91	85	10	353	27	12	14	45	1.81
23892004--23892188	83	2.2	85	92	1	302	28	11	15	44	1.82
23893459--23893522	26	2.5	26	82	2	76	40	3	9	46	1.52
23893492--23893538	15	3.4	14	77	22	55	36	2	14	46	1.57
23893480--23893538	26	2.3	26	93	0	100	37	1	13	47	1.53
23902137--23902725	46	13.0	46	81	8	593	26	13	23	36	1.92
23902134--23902501	45	7.9	47	83	8	434	26	13	23	36	1.92
23902468--23902544	35	2.2	35	90	0	127	23	10	25	40	1.86
23902932--23902971	19	2.0	20	85	4	55	2	17	0	80	0.83
23904283--23904329	18	2.7	18	80	9	53	63	0	4	31	1.13
23904589--23904964	192	2.0	192	90	1	592	38	10	13	37	1.80
23905767--23905818	2	26.5	2	80	3	52	44	0	1	53	1.11
23905836--23905932	50	1.9	51	87	4	142	46	2	1	50	1.20
23906561--23906596	19	1.9	19	94	5	65	72	0	0	27	0.85
23910539--23910579	21	1.9	22	90	5	66	39	4	2	53	1.35
23911140--23911276	73	1.9	73	96	0	256	36	17	8	37	1.81
23915578--23915624	5	9.8	5	88	4	62	42	0	14	42	1.46
23915578--23915649	28	2.7	28	93	6	123	44	0	11	44	1.39
23915578--23915664	5	20.0	4	86	9	61	43	3	9	43	1.53
23917072--23917582	59	8.7	57	71	14	317	36	8	5	49	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23917237--23917591	62	6.1	57	78	8	309	33	8	5	52	1.56
23917260--23917591	124	2.8	119	80	9	340	33	8	6	52	1.56
23917293--23917591	57	5.1	56	77	13	289	33	8	6	51	1.57
23917539--23917645	51	2.1	52	83	3	135	33	8	3	54	1.49
23917415--23917635	112	2.0	109	80	7	241	34	7	5	52	1.53
23917688--23917770	4	20.8	4	74	9	55	65	3	4	26	1.30
23917720--23917761	21	2.0	22	85	4	59	69	2	4	23	1.20
23930384--23930428	22	2.2	20	84	8	54	42	4	4	48	1.43
23930414--23930802	58	6.5	58	79	11	360	33	8	6	52	1.56
23930624--23930756	66	2.0	65	91	1	212	27	6	6	60	1.44
23930565--23930801	124	1.9	123	84	4	316	31	5	6	56	1.50
23939803--23939836	14	2.4	14	95	0	59	29	8	5	55	1.54
23939866--23939951	45	2.0	44	86	4	120	24	9	6	59	1.53
23940499--23940561	30	2.1	30	96	0	117	34	9	22	33	1.86
23941334--23941358	2	12.5	2	100	0	50	52	0	0	48	1.00
23942371--23942404	16	2.1	16	88	0	50	26	0	5	67	1.13
23948534--23948558	2	12.5	2	100	0	50	48	0	0	52	1.00
23949249--23949300	2	26.0	2	80	0	59	48	7	0	44	1.31
23949370--23949402	2	16.5	2	100	0	66	48	0	0	51	1.00
23949281--23949474	104	1.9	104	96	0	361	39	16	9	34	1.82
23950441--23950490	23	2.1	24	88	3	75	40	2	2	56	1.22
23950541--23950600	28	2.1	28	90	0	93	36	1	0	61	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23956488--23956582	24	3.9	25	70	13	74	45	0	2	52	1.12
23956558--23956600	18	2.2	20	88	8	63	39	0	0	60	0.97
23958636--23958686	21	2.5	21	96	3	95	49	0	0	50	1.00
23958674--23958734	16	3.7	16	72	12	52	60	0	0	39	0.97
23958659--23958715	30	1.9	30	88	0	87	52	0	0	47	1.00
23969302--23969331	16	1.9	15	93	6	51	0	6	0	93	0.35
23981969--23982008	6	6.7	6	86	8	55	65	2	0	32	1.06
23981973--23982006	13	2.7	13	90	4	52	70	2	0	26	1.01
23983288--23983331	15	2.8	16	75	6	54	50	0	0	50	1.00
23986820--23986860	21	1.9	22	85	5	57	48	2	2	46	1.28
23988098--23988211	52	2.2	52	80	0	120	39	6	21	32	1.78
23999716--23999788	30	2.4	30	86	0	110	45	0	12	42	1.41
24000920--24000960	18	2.2	19	91	4	66	34	0	2	63	1.08
24006721--24007037	168	1.9	168	87	1	465	27	12	23	36	1.91
24007729--24007786	3	19.3	3	100	0	116	32	0	0	67	0.91
24015686--24015738	28	1.9	28	85	11	74	58	5	5	30	1.44
24018548--24018582	17	2.0	18	88	5	54	17	0	5	77	0.96
24020492--24020529	20	2.0	20	89	5	60	52	0	0	47	1.00
24020544--24020592	26	1.9	25	91	4	80	51	2	2	44	1.24
24020547--24020605	26	2.3	26	82	11	68	50	5	1	42	1.34
24020683--24020720	18	2.1	18	90	0	58	68	2	0	28	1.03
24024350--24024382	16	2.1	16	100	0	66	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24026431--24026710	151	1.9	152	89	3	440	41	2	0	55	1.20
24027968--24028023	7	7.4	8	74	23	50	62	0	0	37	0.95
24027985--24028016	5	6.8	5	86	13	50	62	0	0	37	0.95
24027979--24028016	18	2.1	18	90	9	60	63	0	0	36	0.95
24027970--24028023	25	2.2	25	83	6	65	62	0	0	37	0.95
24027970--24028023	13	4.3	12	79	9	63	62	0	0	37	0.95
24028150--24028198	25	2.0	25	84	8	64	48	0	2	48	1.12
24028131--24028198	20	3.8	20	63	25	51	52	0	1	45	1.09
24030928--24030989	28	2.2	29	88	2	90	46	8	17	27	1.76
24035438--24035488	14	3.5	14	76	10	57	62	1	1	33	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130