genome.fa.s556.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  4  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937328--937355	2	14.0	2	100	0	56	50	0	0	50	1.00
943249--943291	14	3.2	13	81	12	52	39	0	2	58	1.11
944180--944231	25	2.0	26	89	10	81	51	1	0	46	1.12
952482--952538	23	2.5	24	85	5	73	49	3	0	47	1.18
957315--957367	17	3.0	17	79	17	54	52	0	1	45	1.11
957832--957856	3	8.3	3	100	0	50	64	0	0	36	0.94
957874--957904	15	2.1	15	93	0	53	77	0	0	22	0.77
958979--959023	23	2.0	23	86	0	63	62	2	2	33	1.20
959292--959341	7	6.1	8	80	19	59	48	28	0	24	1.52
959303--959365	7	8.0	7	74	22	54	49	33	0	17	1.47
959294--959364	17	4.4	17	81	13	87	49	30	0	19	1.49
959294--959365	32	2.2	32	87	7	101	48	31	0	19	1.49
966400--966496	41	2.4	41	89	6	144	36	19	15	28	1.93
966748--966809	22	2.8	22	77	0	70	30	25	17	25	1.97
966770--967107	110	3.1	107	82	4	408	23	21	17	38	1.93
966988--968190	133	9.1	133	72	11	666	24	18	18	38	1.93
967244--967288	22	2.0	23	87	8	67	28	17	17	35	1.93
967376--967438	22	2.8	24	80	9	78	34	20	11	33	1.88
967225--967525	154	2.0	154	84	5	403	26	19	15	37	1.92
967752--967814	23	2.8	23	83	7	76	26	23	20	28	1.99
967511--968197	266	2.6	264	83	3	819	23	18	19	39	1.92
967886--967953	23	3.0	23	82	2	84	25	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966981--968520	399	4.0	384	73	15	1072	23	18	18	39	1.92
968019--968068	23	2.2	23	88	0	73	30	22	18	30	1.97
968083--968418	111	3.0	110	85	1	413	22	18	18	40	1.92
968042--968411	110	3.3	110	83	1	391	22	18	18	39	1.92
968378--968447	23	3.1	23	77	4	88	27	20	20	32	1.97
968292--968740	220	2.0	220	84	2	578	23	19	17	39	1.92
968592--968641	23	2.2	23	92	0	82	24	22	24	30	1.99
968080--968638	111	5.1	111	70	12	403	22	18	19	39	1.92
969018--969047	10	3.0	10	95	0	51	76	0	0	23	0.78
970440--970622	17	11.7	15	75	16	133	49	31	1	18	1.54
970440--970611	8	21.8	8	66	18	58	48	31	1	18	1.56
970440--970556	32	3.6	32	81	5	121	51	31	1	15	1.54
970577--970622	14	3.1	14	85	11	65	54	30	0	15	1.41
973408--973434	8	3.4	8	100	0	54	37	14	0	48	1.45
980284--980316	2	16.5	2	100	0	66	48	0	0	51	1.00
984557--984662	30	3.5	30	79	6	99	37	10	4	47	1.59
984684--984768	29	2.9	30	77	8	77	55	2	4	37	1.34
985634--985829	102	1.9	103	88	1	295	50	5	8	35	1.57
987917--987976	24	2.5	24	79	15	70	3	5	63	28	1.31
987917--988026	9	12.2	9	69	11	55	3	7	62	26	1.38
1010096--1010120	2	12.5	2	100	0	50	52	0	0	48	1.00
1010341--1010366	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011386--1011432	22	2.3	20	78	10	51	65	6	2	25	1.27
1013275--1013317	19	2.3	19	91	0	68	30	0	0	69	0.88
1013485--1013540	28	1.9	30	82	7	71	44	1	8	44	1.45
1024587--1024635	16	2.9	17	79	11	57	63	2	0	34	1.06
1024594--1024642	23	2.1	24	84	3	64	67	2	0	30	1.02
1024618--1024673	27	2.1	27	86	0	76	60	1	0	37	1.07
1030755--1030779	13	1.9	13	100	0	50	64	0	0	36	0.94
1032297--1032343	24	1.9	25	86	4	69	68	4	4	23	1.26
1039097--1039133	19	1.9	19	88	0	56	35	5	10	48	1.61
1040587--1040619	6	5.8	6	86	13	52	63	0	0	36	0.95
1040587--1040619	10	3.0	11	86	13	50	63	0	0	36	0.95
1040593--1040629	16	2.3	16	90	0	56	56	0	0	43	0.99
1040587--1040632	12	4.0	12	80	11	51	56	0	0	43	0.99
1044773--1044810	20	1.9	20	88	0	58	71	2	2	23	1.12
1045837--1048737	579	5.0	579	98	0	5582	34	21	17	26	1.95
1051620--1051655	2	18.5	2	94	5	65	52	0	0	47	1.00
1055730--1055756	11	2.5	11	100	0	54	62	0	0	37	0.95
1065479--1065520	14	2.9	14	80	16	50	42	0	4	52	1.22
1074141--1074199	27	2.1	28	87	6	84	49	18	8	23	1.75
1074152--1074212	27	2.3	26	83	11	70	47	21	9	21	1.79
1092334--1092358	13	1.9	13	100	0	50	72	0	24	4	1.02
1099395--1099431	2	18.5	2	94	0	65	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119157--1119221	22	3.0	21	84	6	76	32	3	3	61	1.27
1119190--1119233	22	1.9	22	86	9	61	36	0	0	63	0.95
1119241--1119288	23	2.1	23	92	7	80	50	0	0	50	1.00
1129753--1129906	52	3.0	52	81	1	195	46	7	16	28	1.75
1130024--1130124	50	2.0	50	96	0	184	31	9	29	28	1.89
1130484--1130579	25	3.9	25	81	8	115	38	6	34	20	1.78
1130483--1130579	49	2.0	50	87	2	142	38	7	34	20	1.80
1130821--1130858	11	3.5	11	82	13	51	18	0	28	52	1.45
1130818--1130864	22	2.1	22	92	0	76	25	0	27	46	1.53
1130885--1131041	52	3.0	52	76	5	165	43	8	20	26	1.81
1131099--1131210	52	2.2	52	80	4	129	49	8	12	30	1.69
1130906--1131272	180	2.0	182	89	3	571	43	6	19	29	1.76
1131327--1131418	48	1.9	48	90	0	148	22	8	29	39	1.84
1136358--1136514	78	2.0	78	98	0	305	31	21	10	37	1.86
1138944--1139029	42	2.0	42	97	0	163	50	12	11	25	1.74
1140282--1140311	2	15.0	2	92	0	51	50	3	0	46	1.18
1141632--1141688	22	2.8	21	78	21	68	33	0	5	61	1.18
1141660--1141705	18	2.6	17	83	10	56	32	0	0	67	0.91
1141855--1141894	18	2.1	20	86	9	57	32	0	0	67	0.91
1141561--1141950	195	2.0	195	95	0	708	39	1	5	53	1.32
1142063--1142094	14	2.4	14	94	5	57	53	0	0	46	1.00
1142187--1142220	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1151212--1151292	40	2.0	43	87	7	123	45	18	12	23	1.83
1154186--1154226	14	2.9	13	83	16	55	63	2	0	34	1.08
1154189--1154242	15	3.5	16	82	14	60	61	1	1	35	1.18
1154186--1154247	25	2.2	28	81	13	67	61	1	3	33	1.22
1159728--1159762	2	17.5	2	100	0	70	48	0	0	51	1.00
1172131--1172201	35	2.1	34	84	7	90	42	19	11	26	1.85
1173999--1174049	18	2.8	18	80	11	59	13	21	9	54	1.67
1175159--1175193	14	2.5	13	86	13	52	2	2	14	80	0.95
1178389--1178428	16	2.5	16	91	0	62	65	2	0	32	1.06
1188394--1188547	52	3.0	52	84	0	182	42	9	20	27	1.82
1188736--1188784	23	2.1	23	100	0	98	63	4	4	28	1.31
1189680--1189734	25	2.2	25	83	0	74	45	3	27	23	1.69
1189688--1189736	25	2.0	25	91	0	80	42	4	28	24	1.73
1190040--1190195	52	3.0	52	86	3	190	43	7	20	28	1.79
1194498--1194556	29	2.0	29	93	0	100	28	18	20	32	1.96
1200975--1201009	11	3.2	11	84	15	54	82	14	0	2	0.77
1201757--1201801	20	2.3	19	76	3	54	13	55	28	2	1.50
1201832--1201923	32	2.9	32	90	0	148	35	41	20	2	1.65
1201882--1201924	13	3.1	15	87	12	65	37	41	20	0	1.53
1202539--1202584	19	2.5	17	80	16	56	65	0	4	30	1.12
1202163--1202721	207	2.7	207	88	6	783	42	8	15	32	1.77
1202748--1202783	18	2.0	18	94	0	63	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202748--1202787	10	4.2	10	87	12	57	62	0	0	37	0.95
1203960--1203985	11	2.4	11	100	0	52	92	7	0	0	0.39
1214535--1214956	47	8.9	47	94	3	722	26	13	26	33	1.94
1215129--1215163	11	3.2	11	84	15	54	82	14	0	2	0.77
1215920--1215964	20	2.3	19	76	3	54	13	55	28	2	1.50
1215995--1216086	32	2.9	32	90	0	148	35	41	20	2	1.65
1216045--1216087	13	3.1	15	87	12	65	37	41	20	0	1.53
1216499--1216542	18	2.4	18	84	3	52	63	2	2	31	1.19
1216335--1216893	213	2.6	212	88	4	808	42	8	15	32	1.77
1216701--1216758	20	2.8	19	76	21	55	67	0	5	27	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130