genome.fa.s556.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  102  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19979176--19979462	36	8.1	36	74	10	148	27	14	7	49	1.70
19979554--19979646	36	2.6	36	85	9	113	29	10	8	51	1.66
19979582--19979665	36	2.3	37	83	4	100	26	14	9	50	1.73
19979702--19979902	48	4.3	47	78	12	191	26	17	4	50	1.65
19983830--19984142	42	7.5	42	79	5	314	46	16	11	25	1.81
19983837--19984142	166	1.8	165	84	3	418	46	16	11	25	1.80
19983837--19984144	124	2.5	124	84	6	399	46	16	11	25	1.80
19984508--19984932	25	18.6	23	76	13	305	36	16	9	37	1.81
19984508--19984844	46	7.3	46	82	8	359	36	16	10	37	1.82
19984506--19984937	71	6.3	67	81	9	337	36	15	10	37	1.82
19984554--19984937	92	4.2	91	79	10	383	36	16	10	37	1.82
19984692--19984867	70	2.6	69	89	4	243	39	15	7	38	1.75
19986256--19986281	13	2.0	13	100	0	52	15	7	0	76	0.99
19991031--19991075	16	2.8	16	83	6	56	75	11	2	11	1.13
20000809--20000834	8	3.2	8	100	0	52	38	11	0	50	1.39
20000792--20000834	16	2.8	16	86	13	56	44	6	0	48	1.29
20001111--20001151	7	5.9	7	91	0	55	65	0	34	0	0.93
20001113--20001151	14	2.8	14	96	0	69	64	0	35	0	0.94
20001111--20001151	21	2.0	21	95	0	73	65	0	34	0	0.93
20001562--20001614	22	2.4	22	93	6	90	50	0	0	49	1.00
20001960--20001988	14	2.1	14	100	0	58	20	31	20	27	1.98
20003160--20003188	5	5.8	5	100	0	58	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20003364--20003403	19	2.1	19	86	9	55	62	10	7	20	1.50
20003605--20003647	12	3.7	11	82	17	52	86	2	11	0	0.67
20003604--20003634	16	1.9	16	93	0	53	87	0	12	0	0.55
20003605--20003647	17	2.5	17	84	0	59	86	2	11	0	0.67
20008603--20008634	3	10.7	3	100	0	64	31	0	0	68	0.90
20008915--20008977	25	2.6	25	87	5	94	49	0	1	49	1.10
20009145--20009187	17	2.7	16	86	10	61	46	4	0	48	1.22
20009339--20009449	42	2.6	42	81	11	127	49	1	0	48	1.11
20009389--20009421	12	2.9	12	91	8	52	39	0	0	60	0.97
20011498--20011546	19	2.5	19	80	3	62	48	0	6	44	1.27
20011862--20012393	265	2.0	265	98	0	1037	36	14	15	34	1.88
20012423--20012689	133	2.0	133	94	0	471	39	11	8	40	1.72
20012827--20013100	61	4.6	59	79	11	281	35	9	4	50	1.55
20012827--20013108	121	2.3	122	86	4	385	34	9	4	51	1.55
20012827--20013108	60	4.7	61	79	9	303	34	9	4	51	1.55
20014792--20015077	85	3.4	83	79	4	295	46	15	16	20	1.83
20014798--20015001	84	2.4	84	82	5	259	47	16	16	19	1.83
20014798--20015151	85	4.2	85	78	5	250	47	15	16	20	1.83
20015286--20015317	15	2.1	15	94	0	55	46	18	9	25	1.79
20015307--20015355	19	2.8	17	79	11	62	51	12	16	20	1.76
20015344--20015441	33	2.9	33	73	3	88	37	12	17	32	1.87
20020697--20020983	60	4.8	60	80	11	288	37	7	5	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20020689--20020982	122	2.5	118	79	10	353	37	7	5	49	1.53
20025454--20025492	18	2.1	19	85	4	53	61	2	35	0	1.10
20025766--20025804	20	1.9	21	84	5	53	20	2	7	69	1.26
20029750--20029782	15	2.1	16	88	5	50	57	3	21	18	1.53
20046796--20046826	2	15.5	2	100	0	62	0	48	0	51	1.00
20050822--20051043	119	1.9	120	89	0	347	40	16	14	29	1.88
20052612--20052740	18	7.3	18	70	15	83	42	32	6	18	1.75
20052663--20052750	19	4.8	19	83	4	101	40	32	5	20	1.76
20052844--20053166	159	2.0	159	100	0	646	38	9	6	45	1.61
20054704--20055317	134	4.7	131	78	9	582	38	7	8	46	1.62
20055212--20055435	114	2.0	113	84	2	299	37	6	8	47	1.60
20055316--20055577	131	2.0	131	82	4	323	36	5	9	47	1.61
20055068--20055563	245	2.0	246	83	4	624	37	6	9	46	1.62
20055985--20056444	144	3.2	142	79	7	466	34	11	11	42	1.77
20056861--20056895	13	2.8	13	87	12	56	80	8	5	5	1.03
20058025--20058062	18	2.2	17	90	4	58	18	7	18	55	1.66
20060613--20060660	25	1.9	25	82	0	60	37	4	4	54	1.39
20064604--20064663	13	4.7	12	82	12	66	16	3	3	76	1.05
20064620--20064690	26	2.7	27	81	12	78	16	5	4	73	1.19
20065187--20065247	25	2.5	24	82	12	70	24	1	3	70	1.11
20070072--20070105	2	17.0	2	100	0	68	0	50	0	50	1.00
20071787--20071843	24	2.3	25	78	6	62	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20071746--20071905	64	2.4	65	79	9	157	49	3	3	44	1.34
20075983--20076025	19	2.2	20	87	4	61	48	0	2	48	1.14
20078966--20079012	2	23.5	2	82	0	58	51	40	0	8	1.33
20078965--20079012	10	4.8	10	100	0	96	50	39	0	10	1.37
20081214--20081366	82	1.9	82	92	0	261	39	15	14	30	1.87
20093816--20094069	123	2.0	125	93	1	431	40	8	12	37	1.75
20097006--20097065	30	2.0	30	96	0	111	8	3	18	70	1.27
20102480--20102513	17	1.9	18	88	5	52	23	8	8	58	1.56
20102600--20102699	50	2.0	50	100	0	200	36	8	16	40	1.77
20106783--20106812	7	4.1	7	95	4	51	73	0	26	0	0.84
20109877--20109962	30	2.8	31	74	20	92	54	1	5	38	1.32
20111191--20111257	27	2.5	26	77	15	73	62	2	1	32	1.19
20111880--20111949	18	3.7	18	76	12	68	41	4	1	52	1.30
20111840--20111905	27	2.4	28	87	5	98	42	3	1	53	1.25
20113820--20113904	34	2.5	34	84	0	107	34	5	17	42	1.74
20113820--20113937	34	3.5	34	81	4	105	33	6	16	42	1.75
20115617--20115661	8	5.8	8	84	5	56	68	0	6	24	1.13
20115623--20115665	15	2.8	15	85	3	50	69	0	6	23	1.12
20115640--20115683	13	3.2	13	83	6	52	79	2	4	13	0.98
20121779--20121832	23	2.4	22	78	15	56	62	1	1	33	1.16
20123237--20123304	16	4.4	16	73	14	61	58	0	0	41	0.98
20123743--20123780	2	19.0	2	94	0	67	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20128263--20128313	21	2.4	21	86	0	66	39	0	19	41	1.52
20128476--20128531	20	2.7	20	81	10	60	37	0	0	62	0.95
20128467--20128533	21	3.3	20	76	10	66	40	0	0	59	0.97
20129546--20129578	16	2.0	17	88	5	50	45	0	6	48	1.27
20134714--20134743	10	3.1	10	95	4	53	36	0	0	63	0.95
20137541--20137599	26	2.2	25	82	11	73	8	1	10	79	1.00
20138014--20138056	22	2.0	22	95	0	77	23	9	32	34	1.87
20137905--20138134	126	1.8	125	86	2	336	30	13	18	37	1.89
20137900--20138165	126	2.1	125	83	4	329	30	13	19	36	1.90
20138027--20138251	104	2.2	104	86	1	299	32	15	18	33	1.92
20138262--20138338	32	2.4	32	80	0	91	24	12	28	33	1.93
20138333--20138384	23	2.3	23	82	0	68	42	19	11	26	1.85
20138860--20138959	32	3.1	31	77	5	110	30	12	19	39	1.87
20139989--20140272	146	1.9	147	79	8	310	21	17	7	53	1.68
20143721--20144267	154	3.6	152	85	3	679	37	3	13	45	1.62
20144020--20144055	18	2.0	19	89	10	58	30	0	13	55	1.39
20144174--20144207	17	1.9	18	88	5	52	29	0	14	55	1.40
20144470--20144511	2	21.0	2	85	9	59	50	0	4	45	1.23
20158146--20158197	2	26.0	2	88	0	77	1	46	0	51	1.12
20160532--20160561	2	15.0	2	100	0	60	50	0	0	50	1.00
20162437--20162484	16	3.1	15	82	8	51	18	6	8	66	1.39
20162449--20162485	16	2.3	16	90	0	56	16	5	8	70	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20164457--20164511	3	18.7	3	96	3	103	34	0	0	65	0.93
20164948--20164980	11	3.0	11	95	0	57	51	9	3	36	1.49
20171282--20171457	63	2.8	63	73	10	171	34	8	5	51	1.56
20172153--20172254	11	9.8	10	71	24	61	68	1	8	20	1.26
20172161--20172254	41	2.1	43	81	18	122	68	2	8	21	1.27
20173581--20173627	11	4.4	11	82	17	55	40	0	2	57	1.11
20173994--20174051	26	2.2	25	81	9	62	74	1	17	6	1.12
20176875--20176899	1	25.0	1	100	0	50	0	0	0	100	0.00
20182276--20182315	2	21.0	2	85	10	57	50	0	0	50	1.00
20182523--20182588	33	2.0	33	90	0	105	34	19	7	37	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130