genome.fa.s556.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  129  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26448929--26449033	49	2.1	49	89	0	156	53	12	18	16	1.73
26449895--26450887	89	11.2	89	82	2	1021	18	20	15	45	1.85
26449895--26450943	267	3.9	267	82	1	1158	18	20	15	45	1.85
26451223--26451288	3	22.0	3	90	0	105	28	0	3	68	1.05
26452121--26452153	16	2.2	16	89	10	52	6	6	0	87	0.65
26452269--26452325	20	2.9	19	80	10	69	85	1	1	10	0.73
26452266--26452318	21	2.5	21	87	6	72	86	3	1	7	0.75
26454189--26454381	98	2.0	98	85	2	262	38	8	10	41	1.70
26454189--26454431	98	2.5	96	79	9	217	40	7	10	41	1.68
26455553--26455902	84	4.2	84	78	3	321	36	15	15	32	1.90
26456160--26456264	17	6.2	17	72	8	88	35	11	15	38	1.83
26456157--26456220	9	7.4	9	68	10	53	37	7	18	35	1.80
26456157--26456221	34	1.9	34	93	0	112	38	7	18	35	1.80
26456491--26456644	81	1.9	81	81	7	188	45	9	7	38	1.63
26456721--26456912	22	8.5	22	69	11	93	43	14	6	35	1.70
26456705--26456896	46	4.2	47	74	9	146	43	13	6	35	1.71
26456730--26456780	25	2.1	25	82	10	61	49	9	3	37	1.55
26456721--26456905	44	4.1	44	75	8	140	43	14	6	35	1.71
26460434--26460488	22	2.5	22	81	0	65	40	7	9	43	1.64
26460437--26460535	52	1.9	52	83	4	128	40	6	7	46	1.56
26460525--26460583	22	2.7	22	79	7	68	33	8	10	47	1.68
26460662--26460703	22	1.9	22	90	0	66	38	14	4	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26460793--26460841	22	2.2	22	85	7	64	34	12	6	46	1.66
26460856--26460958	22	4.7	22	76	7	66	38	8	5	46	1.59
26461243--26461354	22	5.1	22	82	0	116	41	8	7	43	1.61
26461455--26461549	22	4.3	22	71	0	64	41	6	6	46	1.54
26461492--26461552	11	5.5	11	71	7	52	39	3	6	50	1.45
26461492--26461576	44	2.0	43	86	6	118	40	4	5	49	1.48
26461631--26461786	43	3.6	43	77	5	111	37	9	5	47	1.59
26461643--26461777	44	3.1	43	79	6	146	36	10	5	48	1.60
26461661--26461842	22	8.4	22	66	13	83	36	11	5	46	1.64
26461938--26461975	20	2.0	20	89	5	60	10	2	7	78	1.04
26462209--26462305	18	4.6	22	72	23	59	51	0	1	47	1.07
26462172--26462276	16	6.3	16	69	19	72	49	0	0	49	1.07
26462505--26462600	22	4.4	21	75	18	97	37	6	2	54	1.38
26462504--26462611	44	2.5	44	84	6	139	37	6	3	52	1.45
26462504--26462628	22	5.7	22	75	16	91	38	7	3	51	1.46
26462536--26462627	44	2.1	44	83	4	114	38	6	4	51	1.48
26467530--26467569	20	2.0	21	90	5	64	57	5	12	25	1.55
26477867--26477920	26	2.1	26	82	0	63	27	5	16	50	1.68
26480290--26480340	3	17.0	3	100	0	102	33	0	0	66	0.92
26481579--26481644	17	3.6	17	73	15	69	56	6	0	37	1.24
26481582--26481654	38	1.9	38	97	0	137	54	8	0	36	1.30
26481584--26481683	38	2.7	38	87	1	121	53	7	3	37	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26484535--26484571	3	12.3	3	100	0	74	67	0	0	32	0.91
26486456--26486561	42	2.5	42	89	1	149	24	15	16	43	1.87
26486460--26486747	129	2.2	128	84	5	366	24	13	17	44	1.85
26486533--26486697	87	1.9	84	82	3	204	27	12	17	42	1.86
26486534--26486748	42	5.0	42	80	7	198	25	13	18	42	1.87
26486962--26487015	22	2.4	21	81	9	54	18	3	3	74	1.12
26488635--26488668	16	2.1	17	88	5	52	38	0	2	58	1.13
26488651--26489048	58	6.8	57	77	11	317	44	5	12	37	1.66
26488655--26489048	119	3.3	119	82	6	387	44	5	12	36	1.66
26488655--26488992	119	2.8	120	86	2	421	45	5	12	36	1.65
26490757--26490871	39	2.9	41	85	2	153	23	17	18	40	1.91
26491900--26491937	19	2.0	19	89	0	58	15	0	7	76	1.01
26492452--26492485	17	2.0	17	88	11	52	50	0	0	50	1.00
26495706--26495732	4	6.8	4	100	0	54	74	0	25	0	0.83
26496105--26496133	2	14.5	2	100	0	58	48	0	0	51	1.00
26496986--26497019	13	2.6	13	80	0	50	44	0	14	41	1.45
26497319--26497358	2	19.5	2	89	5	53	55	0	42	2	1.13
26497437--26497463	6	4.5	6	100	0	54	33	0	0	66	0.92
26497640--26497702	30	2.0	32	87	6	94	44	7	1	46	1.42
26498679--26498730	27	1.9	27	88	0	77	57	1	0	40	1.10
26498679--26498733	19	2.8	20	78	5	60	54	1	0	43	1.10
26499383--26499412	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26509741--26509766	2	13.0	2	100	0	52	50	0	0	50	1.00
26511414--26511450	11	3.5	11	82	17	51	62	0	8	29	1.24
26514709--26514752	22	2.0	22	86	4	63	36	9	2	52	1.46
26515138--26515212	32	2.4	32	86	6	109	45	1	4	49	1.29
26517372--26517409	2	19.0	2	94	0	67	47	0	2	50	1.15
26519406--26519457	21	2.2	25	83	12	67	50	1	3	44	1.31
26519405--26519460	25	2.2	26	78	18	64	51	1	3	42	1.29
26519575--26519652	34	2.3	35	82	8	99	37	3	0	58	1.16
26519609--26519649	20	2.1	19	86	9	55	34	0	0	65	0.93
26520214--26520248	17	2.0	17	88	5	52	48	0	0	51	1.00
26520301--26520362	22	2.7	23	80	7	56	41	1	0	56	1.09
26520314--26520362	22	2.1	24	85	7	66	40	2	0	57	1.10
26520316--26520373	21	2.6	22	78	5	55	43	1	0	55	1.10
26520435--26520483	11	4.2	11	77	12	53	44	0	0	55	0.99
26520943--26520971	13	2.3	13	94	5	51	82	0	17	0	0.66
26521531--26521626	29	3.2	28	74	12	86	38	2	2	57	1.22
26521548--26521692	30	4.9	30	78	7	136	40	4	2	53	1.34
26523378--26523424	12	3.8	13	83	10	55	29	0	2	68	1.02
26523375--26523417	19	2.3	19	88	8	61	30	0	2	67	1.03
26524413--26524676	93	2.9	93	93	2	428	45	6	8	39	1.60
26524847--26525043	94	2.1	94	88	1	288	45	9	9	36	1.68
26528421--26528453	18	1.9	17	88	11	50	33	6	0	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26529014--26529044	13	2.4	13	100	0	62	19	0	6	74	1.03
26532782--26532818	2	18.5	2	100	0	74	0	0	48	51	1.00
26537988--26538025	20	1.9	20	88	0	58	39	2	0	57	1.12
26538469--26538495	13	2.1	13	100	0	54	51	14	7	25	1.68
26539665--26539760	48	2.0	48	97	0	183	37	21	3	37	1.70
26540526--26540895	183	2.0	182	82	3	440	37	6	10	45	1.63
26540381--26541947	543	3.0	515	76	11	1099	41	7	9	42	1.64
26540901--26549333	181	46.8	180	74	8	4619	41	6	8	42	1.63
26540901--26549333	362	23.4	362	75	8	5143	41	6	8	42	1.63
26543727--26543777	18	2.9	17	81	16	52	33	5	3	56	1.42
26544435--26544478	23	1.9	23	95	0	79	34	0	0	65	0.93
26546799--26546837	20	2.0	20	85	9	55	38	5	2	53	1.37
26540931--26549333	720	11.7	721	75	9	4885	41	6	8	42	1.63
26549331--26549367	19	1.9	19	94	0	65	45	0	10	43	1.39
26549947--26550218	59	4.7	58	84	4	278	36	9	6	46	1.63
26549987--26550231	117	2.1	117	82	4	298	36	9	6	46	1.64
26550243--26550387	16	8.9	16	65	27	58	70	2	4	23	1.15
26550238--26550304	5	13.4	5	71	14	50	77	0	4	17	0.93
26550241--26550305	27	2.4	27	85	12	80	78	0	4	16	0.91
26550241--26550305	21	3.1	20	83	14	78	78	0	4	16	0.91
26550241--26550390	6	23.7	6	68	18	56	71	2	4	22	1.13
26550325--26550382	10	5.6	10	78	17	57	67	0	3	29	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26550594--26550646	28	1.9	27	85	11	72	0	47	0	52	1.00
26551208--26551272	20	3.3	20	73	14	55	66	1	7	24	1.27
26551203--26551301	41	2.4	40	80	11	110	63	1	7	28	1.27
26551264--26551331	14	4.4	14	74	15	55	63	1	4	30	1.23
26551253--26551346	26	4.0	24	80	11	99	64	1	4	29	1.19
26551195--26551340	21	6.7	21	71	18	102	65	2	5	27	1.26
26551244--26551365	34	3.8	31	76	18	94	65	2	4	27	1.25
26551261--26551367	31	3.4	31	77	15	78	67	1	4	26	1.20
26551352--26551381	15	2.0	15	100	0	60	86	0	13	0	0.57
26551398--26551438	15	2.6	15	88	7	55	68	2	2	26	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130