genome.fa.s556.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  127  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25867705--25867744	2	20.0	2	100	0	80	50	0	0	50	1.00
25869425--25869455	3	10.3	3	100	0	62	32	0	67	0	0.91
25870264--25870294	16	1.9	16	100	0	62	25	12	16	45	1.83
25871221--25871284	16	3.9	17	73	17	55	45	6	4	43	1.50
25871229--25871295	16	4.2	16	78	14	66	46	8	2	41	1.50
25871235--25871295	32	1.9	32	86	6	88	47	8	1	42	1.43
25886320--25886390	13	5.5	13	76	5	72	40	1	1	56	1.17
25886334--25886385	27	1.9	27	84	0	68	40	1	1	55	1.22
25886498--25886577	29	2.7	31	74	12	89	61	0	0	38	0.96
25886500--25886568	31	2.2	30	80	12	77	62	0	0	37	0.96
25886548--25886608	21	3.0	20	78	19	56	54	0	0	45	1.00
25886558--25886616	21	2.8	20	85	12	75	47	1	0	50	1.11
25887490--25887515	13	2.0	13	100	0	52	30	0	0	69	0.89
25904116--25904175	3	20.0	3	96	0	111	65	1	0	33	1.03
25909106--25909133	2	14.0	2	100	0	56	0	50	0	50	1.00
25909636--25909665	14	2.1	14	100	0	60	20	6	23	50	1.71
25909955--25909998	22	2.0	22	90	0	70	43	11	11	34	1.77
25913618--25913680	26	2.5	26	85	10	85	42	12	23	20	1.86
25921901--25921929	2	14.5	2	100	0	58	51	0	0	48	1.00
25924006--25924184	58	3.2	55	73	15	168	47	19	12	20	1.81
25924208--25924315	55	1.9	55	83	9	139	49	22	10	18	1.77
25924208--25924500	56	5.0	55	73	12	165	47	21	10	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25924545--25924771	75	3.0	75	80	3	269	27	18	17	36	1.94
25924736--25924949	115	1.9	115	86	3	306	32	25	15	26	1.96
25925036--25925163	64	2.0	64	92	0	211	31	18	10	39	1.84
25934549--25934619	22	3.1	23	75	15	67	64	0	1	33	1.02
25936136--25936193	4	14.5	4	92	0	53	50	13	1	34	1.52
25936134--25936174	2	20.5	2	84	0	55	51	7	0	41	1.30
25943625--25943703	35	2.2	36	82	8	101	54	0	0	45	0.99
25943634--25943682	9	5.6	9	73	22	50	55	0	0	44	0.99
25943625--25943718	33	2.8	32	79	12	84	54	1	0	44	1.07
25943699--25943742	19	2.3	19	80	7	54	54	4	4	36	1.41
25943768--25943980	13	14.6	15	68	26	79	43	0	0	54	1.13
25943758--25943826	35	2.0	35	88	0	102	40	2	0	56	1.14
25943880--25943925	22	2.1	22	88	8	67	41	0	0	58	0.98
25943871--25943986	21	6.0	20	74	12	75	43	0	0	56	0.99
25946404--25946439	2	18.5	2	88	5	56	52	0	0	47	1.00
25948775--25948808	17	2.0	17	88	11	52	8	14	5	70	1.31
25949783--25950244	22	21.0	22	69	13	209	49	7	9	33	1.62
25950268--25950349	22	3.7	22	79	6	94	42	6	10	40	1.65
25950270--25950388	44	2.7	43	82	8	125	42	6	10	39	1.66
25950294--25950412	22	5.5	21	73	7	69	42	5	11	39	1.66
25950450--25950512	31	2.0	31	90	3	99	52	1	6	39	1.37
25950516--25950602	22	4.0	22	81	0	102	44	9	6	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25950519--25950602	44	1.9	44	85	0	114	45	8	7	39	1.62
25950520--25950616	22	4.4	22	78	2	61	45	7	8	39	1.62
25951174--25951270	11	8.9	11	67	6	54	51	7	3	38	1.45
25951133--25951277	22	6.6	21	79	10	123	48	7	4	39	1.51
25968622--25968651	15	2.0	15	93	0	51	86	0	10	3	0.67
25970569--25970610	3	14.0	3	100	0	84	33	0	0	66	0.92
25972022--25972047	13	2.0	13	100	0	52	23	46	7	23	1.78
25986773--25986807	19	1.9	18	88	11	54	34	34	11	20	1.88
25991285--25991351	31	2.2	31	83	5	82	5	17	1	74	1.09
25991307--25991362	25	2.1	27	87	6	80	3	19	1	75	1.05
25993991--25994027	18	2.1	18	89	0	56	37	5	13	43	1.67
26000555--26001083	264	2.0	264	95	0	950	20	27	19	32	1.97
26006833--26006884	26	2.0	26	96	0	95	44	7	9	38	1.66
26009985--26010023	14	2.7	15	80	8	53	28	0	7	64	1.21
26015253--26015291	2	19.5	2	94	0	69	51	2	0	46	1.14
26018068--26018118	10	5.1	10	76	9	59	37	1	0	60	1.08
26018057--26018122	30	2.2	30	88	2	96	33	1	1	63	1.13
26018884--26018910	14	1.9	14	100	0	54	85	0	0	14	0.61
26022333--26022928	40	13.8	44	79	8	326	47	18	10	22	1.79
26022545--26022807	44	5.8	47	74	12	203	50	17	8	23	1.73
26022407--26022809	224	1.8	223	82	0	527	49	16	10	23	1.76
26022629--26022934	81	3.7	81	83	6	339	49	18	10	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26022629--26022934	121	2.5	124	84	5	361	49	18	10	21	1.77
26022634--26022934	40	7.3	40	85	5	334	49	19	10	20	1.78
26023437--26023515	21	3.7	21	84	3	95	39	16	10	34	1.82
26023480--26023538	30	2.0	30	86	6	84	38	18	11	30	1.87
26025760--26025805	24	1.9	25	82	8	60	56	15	2	26	1.50
26028799--26028948	67	2.2	66	80	10	160	20	12	5	61	1.51
26029036--26029093	24	2.4	24	80	8	64	39	12	3	44	1.58
26029179--26029220	17	2.5	17	80	0	57	76	0	0	23	0.79
26046000--26046030	2	15.5	2	93	0	53	48	0	3	48	1.17
26046227--26046273	24	1.9	25	83	12	62	51	2	6	40	1.39
26049619--26049643	13	1.9	13	100	0	50	28	0	0	72	0.86
26055400--26055426	2	13.5	2	100	0	54	0	48	0	51	1.00
26056634--26056669	19	1.9	18	88	5	54	75	0	8	16	1.04
26058048--26058140	48	1.9	48	83	12	120	53	0	1	45	1.07
26058098--26058181	32	2.7	30	80	14	91	48	2	1	47	1.22
26079222--26079252	2	15.5	2	100	0	62	48	0	0	51	1.00
26083397--26083457	11	5.5	11	75	11	52	77	11	0	11	1.01
26084318--26084423	6	17.5	6	74	9	63	74	6	1	16	1.12
26084308--26084386	39	2.1	37	81	9	88	75	8	3	11	1.15
26084652--26084881	41	5.7	40	86	6	286	46	16	14	23	1.83
26084655--26084881	83	2.8	80	86	6	305	45	15	14	23	1.84
26085134--26085188	21	2.6	22	80	5	62	36	14	9	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26086065--26086110	17	2.6	17	86	6	56	6	4	2	86	0.75
26086064--26086110	18	2.6	18	89	3	67	6	4	2	87	0.74
26096987--26097037	25	2.0	25	85	7	68	41	7	7	43	1.63
26097596--26097654	31	1.9	31	92	0	100	49	18	15	16	1.80
26098028--26098124	6	15.7	6	72	14	63	74	4	2	19	1.09
26098056--26098107	9	5.9	9	76	13	54	75	3	0	21	0.97
26098079--26098123	16	2.9	14	81	18	54	73	2	0	24	0.95
26100151--26100201	23	2.2	24	86	10	70	35	5	1	56	1.35
26100218--26100260	19	2.2	18	84	12	50	48	4	2	44	1.36
26105325--26105356	12	2.7	12	95	0	55	9	6	43	40	1.62
26110392--26110428	19	1.9	19	88	0	56	48	0	2	48	1.15
26120461--26120498	5	7.6	5	100	0	76	0	39	0	60	0.97
26120780--26120809	5	6.2	5	92	7	53	80	0	0	20	0.72
26120781--26120814	9	3.7	9	88	7	50	76	0	0	23	0.79
26120780--26120806	14	1.9	14	100	0	54	81	0	0	18	0.69
26120920--26120980	31	2.0	31	81	12	72	55	0	0	44	0.99
26120973--26121023	13	4.2	12	73	12	50	56	0	1	41	1.10
26126626--26126757	65	2.0	65	92	2	221	26	9	15	48	1.76
26129167--26129197	2	15.5	2	100	0	62	51	0	0	48	1.00
26130843--26130879	18	2.1	18	95	5	67	45	27	0	27	1.54
26132931--26132955	1	25.0	1	100	0	50	100	0	0	0	0.00
26136350--26136515	84	2.0	83	92	1	278	33	23	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26138729--26138793	33	2.0	33	96	0	121	35	35	7	21	1.82
26145137--26145199	29	2.1	31	88	5	94	58	12	7	20	1.59
26145137--26145193	17	3.7	16	72	15	57	61	12	8	17	1.55
26147145--26147178	8	4.2	8	92	0	50	35	64	0	0	0.94
26157166--26157271	53	2.0	53	90	0	167	36	18	10	33	1.85
26161156--26161280	62	2.0	62	92	4	209	32	12	12	42	1.80
26166483--26166527	22	2.0	22	91	8	72	37	0	0	62	0.96
26166521--26166564	20	2.2	20	96	4	81	47	0	0	52	1.00
26166713--26166751	16	2.4	16	82	0	51	35	0	0	64	0.94
26166745--26166788	20	2.2	20	96	4	81	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130