genome.fa.s556.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  38  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9346015--9346105	28	3.2	28	80	0	92	45	38	1	15	1.54
9346039--9346120	14	5.8	14	75	7	67	47	36	1	14	1.52
9347100--9347131	15	2.2	15	94	5	57	25	6	6	62	1.42
9347108--9347199	47	1.9	49	85	12	129	46	5	6	41	1.52
9350639--9350725	21	4.0	22	78	10	90	56	12	29	1	1.44
9351731--9351771	17	2.4	17	80	19	50	65	2	0	31	1.05
9351731--9351792	10	5.9	10	77	9	61	64	3	1	30	1.19
9351731--9351812	16	5.0	16	71	15	60	65	2	2	29	1.18
9351785--9351827	18	2.6	16	85	7	50	74	2	2	20	1.04
9352154--9352190	13	2.8	13	91	0	56	54	18	8	18	1.68
9352203--9352265	19	3.3	19	78	8	74	41	22	15	20	1.90
9352203--9352273	19	3.7	19	74	10	65	40	23	15	19	1.90
9356007--9356037	3	10.3	3	100	0	62	64	0	0	35	0.94
9358212--9358279	29	2.4	29	77	15	81	50	0	1	48	1.10
9358787--9359368	62	9.4	62	67	11	208	35	17	14	32	1.90
9358728--9359365	125	5.1	125	75	6	463	35	17	13	33	1.89
9359097--9359368	62	4.4	63	76	8	245	35	16	15	31	1.91
9363415--9363581	63	2.6	62	82	8	178	38	14	15	31	1.88
9363415--9363569	64	2.4	63	84	8	183	38	12	16	32	1.87
9363607--9363712	56	1.9	56	88	1	160	38	17	11	32	1.86
9370765--9370891	68	1.9	68	88	3	193	35	7	15	40	1.77
9371707--9371953	55	4.5	55	77	3	235	43	13	15	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9374800--9374884	29	2.9	29	80	0	98	28	22	18	30	1.97
9375180--9375471	32	8.9	31	71	13	160	38	20	13	27	1.90
9375743--9375815	18	4.4	16	78	13	67	78	4	2	15	1.02
9375742--9375815	9	8.9	8	74	14	53	78	4	2	14	1.01
9377984--9378037	24	2.2	24	83	6	65	1	27	3	66	1.19
9379047--9379114	20	3.4	20	85	0	82	26	8	11	52	1.67
9379590--9379651	22	2.8	22	78	4	72	38	14	17	29	1.89
9379734--9379825	41	2.3	39	81	7	112	36	10	11	40	1.77
9379738--9379837	40	2.5	41	80	1	112	37	10	12	41	1.76
9379807--9379906	41	2.5	41	80	8	123	39	14	13	34	1.84
9379980--9380021	23	1.9	22	85	9	59	23	14	7	54	1.64
9383307--9383476	79	2.2	79	81	2	189	38	15	14	31	1.88
9384200--9384582	36	10.8	36	74	8	232	18	17	14	50	1.79
9384236--9384623	36	11.0	36	75	8	162	17	17	14	50	1.78
9384487--9384624	71	1.9	72	83	1	179	17	17	12	52	1.74
9384921--9385011	35	2.6	35	85	5	121	18	16	10	53	1.71
9384958--9385188	35	6.5	35	72	9	121	18	13	13	54	1.70
9384921--9385114	71	2.7	70	75	7	187	18	13	11	56	1.67
9384921--9385362	71	6.2	70	71	11	172	17	14	14	54	1.72
9385089--9385449	142	2.5	141	82	7	308	16	14	16	53	1.74
9384911--9385879	36	27.2	36	66	12	150	16	15	15	52	1.75
9384976--9385305	178	1.9	178	81	11	408	17	13	15	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9385301--9385415	35	3.3	35	78	6	133	14	17	14	53	1.74
9384957--9385362	178	2.3	178	78	8	384	17	13	14	54	1.72
9385667--9385826	71	2.3	71	78	2	178	19	16	11	52	1.74
9397369--9397714	7	51.7	7	65	13	102	21	1	31	44	1.63
9397368--9397436	20	3.5	20	77	16	63	23	0	34	42	1.54
9397417--9397502	43	2.0	43	86	4	120	27	1	27	43	1.63
9397524--9397610	26	3.4	25	74	16	72	18	3	29	48	1.64
9397548--9397727	13	13.8	13	71	3	94	17	3	32	46	1.64
9397588--9397672	39	2.2	39	85	4	109	20	2	32	44	1.64
9397602--9397714	26	4.4	26	81	1	129	17	1	34	46	1.59
9397612--9397714	52	2.0	52	86	0	143	18	1	33	45	1.61
9397625--9397724	52	1.9	52	89	0	155	17	3	36	44	1.64
9403074--9403110	7	5.3	7	93	0	65	43	27	0	29	1.55
9405548--9405664	32	3.6	33	74	10	105	47	6	2	43	1.43
9405561--9405657	34	2.9	33	80	16	119	50	6	3	40	1.43
9407514--9407541	2	14.0	2	100	0	56	50	0	0	50	1.00
9407566--9407604	6	6.5	6	81	0	51	48	7	33	10	1.66
9407566--9407604	12	3.2	12	100	0	78	48	7	33	10	1.66
9410886--9410929	21	2.1	21	91	0	70	43	15	6	34	1.74
9413194--9413235	21	2.0	22	81	13	52	61	11	2	23	1.42
9415264--9415306	22	2.0	22	81	9	52	46	16	6	30	1.73
9415980--9416032	26	2.0	26	96	0	97	30	16	7	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9418641--9418755	60	1.9	60	83	0	149	26	16	11	46	1.81
9420212--9420334	13	9.8	13	71	15	64	49	35	0	14	1.44
9420229--9420317	6	14.3	6	72	18	58	47	38	0	14	1.45
9420229--9420290	19	3.4	19	73	18	60	48	37	0	14	1.44
9420273--9420321	19	2.6	19	83	3	64	48	40	0	10	1.37
9420270--9420337	26	2.7	26	86	4	86	50	38	0	11	1.39
9421291--9421330	21	1.9	21	94	0	71	10	7	27	55	1.60
9421368--9421408	11	3.4	13	77	16	52	80	0	9	9	0.91
9421368--9421429	23	2.7	22	80	9	70	77	0	11	11	1.00
9422397--9422724	73	4.5	73	73	13	250	34	20	9	35	1.85
9422397--9422724	37	9.1	37	74	11	261	34	20	9	35	1.85
9422418--9422530	36	3.3	34	84	10	124	36	19	8	35	1.83
9424195--9424272	35	2.2	35	93	0	138	44	23	10	21	1.82
9426660--9426688	14	2.0	15	93	6	51	62	0	34	3	1.12
9428715--9428767	21	2.5	21	96	0	97	33	20	24	20	1.97
9432560--9432586	2	13.5	2	100	0	54	48	0	0	51	1.00
9440703--9440739	10	3.7	10	96	0	65	35	32	10	21	1.88
9441875--9441971	5	18.6	5	70	17	56	83	1	13	2	0.79
9441895--9441972	1	78.0	1	74	0	66	87	1	10	1	0.67
9441868--9441971	11	9.1	11	79	11	95	82	0	13	2	0.83
9441871--9441974	28	3.7	27	78	15	95	82	0	13	2	0.83
9441884--9441972	39	2.3	39	88	5	126	85	1	11	2	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9441907--9441972	28	2.3	29	89	5	100	86	1	10	1	0.71
9443603--9443656	20	2.7	20	82	8	65	44	16	12	25	1.84
9444021--9444140	40	3.0	40	79	7	102	33	10	14	41	1.80
9444449--9444497	21	2.3	21	85	0	62	36	28	18	16	1.92
9444459--9444514	21	2.7	20	81	8	67	42	23	14	19	1.88
9444602--9444655	20	2.8	19	81	8	74	74	14	0	11	1.08
9444616--9444673	21	2.7	21	78	2	53	72	17	1	8	1.18
9446490--9446529	6	6.3	6	97	2	62	50	35	0	15	1.44
9446486--9446542	6	8.7	7	90	9	61	54	35	0	10	1.35
9446486--9446586	26	3.9	27	78	8	93	51	33	0	14	1.43
9446550--9446597	14	3.9	12	79	15	53	50	31	0	18	1.48
9447046--9447097	26	1.9	28	84	7	72	48	3	5	42	1.45
9447597--9447641	16	2.9	15	75	18	56	35	8	17	37	1.81
9447651--9447694	15	3.0	14	83	6	52	29	18	22	29	1.97
9447781--9447819	16	2.5	15	88	8	60	30	5	23	41	1.76
9449779--9449907	30	4.3	30	74	3	98	27	13	21	36	1.92
9449772--9449948	60	3.0	60	76	5	162	29	12	23	34	1.92
9449808--9449947	30	4.7	30	77	7	122	30	12	22	35	1.90
9450016--9450184	58	2.9	58	74	11	155	33	11	21	33	1.90
9451043--9451090	18	2.7	18	90	0	78	66	10	0	22	1.22
9451486--9451531	20	2.2	21	81	14	60	50	32	0	17	1.47
9451898--9452139	3	85.7	3	70	16	142	58	3	4	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9451892--9452106	5	40.8	5	71	21	113	57	2	4	34	1.34
9451892--9452121	35	6.4	36	70	20	146	57	3	4	35	1.34
9452363--9452554	55	3.5	55	85	1	233	39	19	23	17	1.92
9452363--9452561	110	1.8	110	84	2	274	39	19	23	17	1.92
9453758--9453786	7	4.3	7	95	4	51	0	10	0	89	0.48
9458207--9458271	14	4.5	15	71	24	59	67	7	4	20	1.33
9458220--9458284	29	2.3	28	84	10	89	70	7	3	18	1.24
9458288--9458328	19	2.2	19	90	0	64	75	4	0	19	0.98
9458719--9458778	20	3.0	20	79	13	61	50	31	3	15	1.60
9459151--9459210	3	20.0	3	100	0	120	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130