genome.fa.s556.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  15  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167433--4167577	22	6.5	22	75	4	94	44	2	9	43	1.48
4167543--4167576	11	3.1	11	91	0	59	58	0	0	41	0.98
4167647--4167730	22	3.9	22	81	9	100	55	2	2	39	1.26
4167657--4167730	11	6.8	11	72	14	64	56	0	2	40	1.13
4167673--4167752	22	3.7	22	85	8	67	50	3	5	41	1.42
4173775--4173808	7	4.9	7	92	0	50	38	0	0	61	0.96
4176550--4176592	14	3.2	13	81	12	59	41	0	2	55	1.12
4183281--4183338	26	2.3	26	90	3	91	37	3	3	55	1.34
4183408--4183433	12	2.2	12	100	0	52	88	0	11	0	0.52
4192634--4192728	21	4.5	21	69	12	61	38	5	10	45	1.61
4193005--4193050	23	2.0	24	86	4	67	47	4	2	45	1.34
4193015--4193098	22	3.8	22	79	4	71	42	8	2	46	1.46
4193010--4193295	44	6.5	44	75	7	181	41	8	5	44	1.58
4193064--4193226	22	7.4	22	75	10	75	41	11	4	42	1.62
4193521--4193575	22	2.5	22	80	11	60	40	9	5	45	1.59
4193640--4193719	22	3.6	22	73	6	72	27	5	8	58	1.49
4193660--4193719	11	5.5	11	81	0	57	28	1	8	61	1.34
4193634--4193719	44	2.0	44	92	0	145	29	4	9	56	1.51
4193756--4193798	22	2.0	22	90	9	70	34	16	4	44	1.68
4194108--4194177	22	3.2	22	83	0	77	42	8	2	45	1.49
4194274--4194377	22	4.9	20	73	9	75	37	12	6	43	1.69
4195456--4195504	22	2.2	22	85	7	64	38	8	6	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4195472--4195577	43	2.4	44	79	3	115	35	10	6	47	1.64
4195571--4195696	61	2.1	61	80	3	137	38	8	2	50	1.47
4195887--4195959	22	3.4	22	80	1	76	31	10	9	47	1.71
4199135--4199187	17	3.2	16	81	5	54	39	3	1	54	1.29
4199174--4199215	14	2.6	16	85	14	52	61	0	2	35	1.09
4199174--4199208	17	2.0	18	88	5	54	60	0	2	37	1.12
4200210--4200259	21	2.3	22	79	6	57	60	6	8	26	1.48
4200615--4200650	2	18.0	2	100	0	72	50	0	0	50	1.00
4200714--4201813	550	2.0	548	98	0	2110	30	18	20	29	1.97
4203144--4203204	30	2.0	30	93	0	104	27	24	13	34	1.93
4207334--4207365	2	16.0	2	100	0	64	50	0	50	0	1.00
4207726--4207754	13	2.1	14	93	6	51	41	0	0	58	0.98
4214593--4214623	2	15.5	2	93	0	53	48	3	0	48	1.17
4223911--4223946	3	12.0	3	100	0	72	33	0	0	66	0.92
4224640--4224674	6	5.8	6	96	0	52	34	60	5	0	1.21
4234238--4234277	21	1.9	21	90	10	64	42	0	5	52	1.23
4234328--4234388	22	2.8	21	78	11	70	62	3	1	32	1.21
4235204--4235238	3	11.7	3	100	0	70	65	0	0	34	0.93
4240603--4240638	2	18.0	2	100	0	72	0	50	0	50	1.00
4242899--4242942	22	2.0	22	86	0	61	36	4	6	52	1.49
4248270--4248304	2	17.5	2	100	0	70	48	0	0	51	1.00
4250928--4250954	6	4.5	6	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4251289--4251341	14	3.8	13	75	9	52	24	1	0	73	0.93
4251317--4251644	164	2.0	162	91	2	523	38	11	13	35	1.82
4254293--4254333	11	3.8	11	78	15	50	48	0	0	51	1.00
4266867--4266898	3	10.7	3	100	0	64	34	0	34	31	1.58
4271432--4271463	2	16.0	2	100	0	64	50	0	0	50	1.00
4271916--4271947	2	16.0	2	100	0	64	50	0	0	50	1.00
4273422--4273520	49	2.0	48	86	5	137	34	8	30	27	1.86
4274075--4274106	2	16.5	2	93	6	57	50	0	0	50	1.00
4276800--4276843	2	22.0	2	100	0	88	50	0	0	50	1.00
4288512--4288555	23	1.9	23	81	9	54	45	4	2	47	1.35
4289509--4289581	36	2.0	36	97	0	137	35	9	13	41	1.77
4305858--4305902	18	2.5	18	88	0	63	20	2	8	68	1.27
4307421--4307446	13	2.0	13	100	0	52	23	7	7	61	1.49
4312156--4312192	18	2.1	17	90	5	56	51	0	16	32	1.45
4313153--4313200	23	2.0	23	84	15	62	58	4	4	33	1.36
4317333--4317397	32	2.0	32	90	0	103	38	7	16	36	1.78
4323248--4323292	18	2.6	16	80	16	54	64	0	0	35	0.94
4325822--4325869	20	2.4	21	72	6	55	60	10	8	20	1.55
4330613--4330656	18	2.7	18	86	13	60	54	0	0	45	0.99
4332696--4332740	21	2.1	21	84	8	56	35	4	8	51	1.54
4334619--4334725	17	6.3	17	66	20	53	31	4	5	57	1.42
4334666--4334725	17	3.5	17	74	17	61	30	3	5	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4334664--4334757	34	2.9	33	82	4	111	28	3	5	62	1.32
4334780--4334810	16	1.9	16	93	0	53	22	9	6	61	1.50
4346133--4346178	13	3.4	14	75	24	53	56	0	0	43	0.99
4350591--4350617	12	2.2	12	100	0	54	37	22	33	7	1.82
4356768--4356816	24	2.1	23	85	11	64	44	0	0	55	0.99
4356917--4356948	15	2.3	15	89	10	50	31	6	0	62	1.20
4356930--4356969	21	1.9	21	85	10	55	35	2	2	60	1.24
4357029--4357080	15	3.6	14	80	15	52	51	5	1	40	1.37
4365535--4365586	22	2.3	23	80	12	63	44	0	0	55	0.99
4365550--4365596	15	3.0	16	80	20	55	40	2	0	57	1.11
4365536--4365590	23	2.5	23	85	5	69	41	0	0	58	0.98
4369294--4369321	2	14.0	2	100	0	56	50	0	0	50	1.00
4384740--4384793	2	27.0	2	100	0	108	0	50	0	50	1.00
4391027--4391052	10	2.6	10	100	0	52	34	7	0	57	1.27
4391101--4391138	20	1.9	20	88	0	58	36	0	0	63	0.95
4392841--4392874	17	2.0	17	100	0	68	35	29	11	23	1.90
4400197--4400277	34	2.4	34	83	10	94	48	7	6	38	1.56
4400946--4400989	22	1.9	24	86	9	65	56	2	11	29	1.46
4401868--4401911	20	2.2	20	80	15	56	43	0	4	52	1.22
4402323--4402350	14	2.0	14	100	0	56	42	0	0	57	0.99
4402319--4402359	15	2.7	15	81	11	57	46	0	0	53	1.00
4402319--4402378	29	2.0	30	81	9	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4402349--4402430	33	2.4	35	81	6	96	54	1	0	43	1.07
4402396--4402445	13	3.8	13	78	0	55	62	0	0	38	0.96
4402355--4402441	33	2.7	32	72	13	79	56	1	0	42	1.07
4402395--4402445	26	2.0	26	84	0	66	62	0	0	37	0.95
4402427--4402455	14	2.0	15	93	6	51	68	0	0	31	0.89
4409056--4409118	31	2.0	31	93	0	108	41	25	12	20	1.88
4416939--4416968	15	2.0	15	93	0	51	36	10	13	40	1.78
4422921--4422958	14	2.7	14	100	0	76	86	0	0	13	0.56
4423461--4423533	24	2.8	26	83	10	96	53	4	1	41	1.28
4427151--4427249	50	2.0	50	87	0	144	59	3	7	30	1.39
4440320--4440348	14	2.1	14	100	0	58	20	6	0	72	1.07
4443790--4443840	23	2.2	23	96	0	93	58	0	3	37	1.16
4443950--4443988	20	2.0	20	89	0	60	30	38	5	25	1.78
4450824--4450866	8	5.6	8	82	17	56	53	13	0	32	1.41
4450824--4450866	7	5.7	7	84	10	50	53	13	0	32	1.41
4451447--4451498	25	2.1	25	85	7	70	44	3	7	44	1.51
4454199--4454230	16	1.9	17	93	6	57	75	3	12	9	1.16
4455487--4455537	11	4.6	11	83	9	59	88	5	3	1	0.69
4455487--4455537	19	2.7	18	82	8	66	88	5	3	1	0.69
4455481--4455537	27	2.1	27	86	3	78	85	5	5	3	0.80
4455900--4456000	32	3.1	32	77	9	98	81	0	8	9	0.89
4455900--4455995	8	11.6	8	75	14	88	81	0	8	10	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4455920--4455997	40	1.9	42	89	5	124	80	0	11	7	0.89
4455899--4455995	14	7.3	13	73	20	67	81	0	8	10	0.88
4456840--4456880	20	2.0	20	86	9	57	31	17	9	41	1.82
4457580--4457637	14	3.9	14	72	12	53	43	5	10	41	1.61
4457583--4457631	15	3.2	15	74	5	53	38	6	10	44	1.63
4457786--4457940	84	1.8	84	84	2	213	25	11	15	47	1.79
4457781--4457941	41	3.9	41	83	8	182	25	11	14	48	1.77
4458106--4458157	8	6.5	8	77	16	54	80	0	3	15	0.85
4458105--4458140	19	1.9	18	94	5	63	80	0	2	16	0.83
4458120--4458157	7	5.1	7	90	9	58	81	0	2	15	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130