Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  116  of  130  ( 15485 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22803302--22803364
13
5.2
12
74
16
58
20
1
0
77
0.85
22803310--22803365
23
2.5
23
85
5
80
25
0
0
75
0.81
22803333--22803370
19
2.0
19
85
10
51
31
0
2
65
1.06
22803430--22803697
59
4.6
58
82
12
318
42
4
11
41
1.62
22815141--22815237
42
2.3
42
94
1
169
26
13
18
41
1.88
22815141--22815309
86
2.0
83
82
3
203
24
17
20
37
1.94
22815290--22815438
43
3.5
43
88
1
210
20
17
23
38
1.93
22815645--22815774
4
32.8
4
69
17
51
30
3
1
63
1.21
22815645--22815813
14
12.5
13
68
21
73
30
4
1
63
1.23
22815609--22815791
20
9.3
19
71
20
94
27
3
3
65
1.26
22815653--22815795
48
3.1
48
75
13
131
31
4
2
62
1.26
22815715--22815798
21
4.0
21
79
13
93
29
4
2
63
1.28
22815716--22815806
43
2.2
41
84
7
112
29
5
2
62
1.29
22816581--22816673
20
4.6
19
72
20
82
26
0
3
69
1.03
22816583--22816672
10
8.9
10
77
16
64
27
0
3
68
1.05
22816639--22816674
5
7.4
5
93
6
65
19
0
0
80
0.71
22816787--22816824
16
2.4
16
82
4
51
42
5
2
50
1.39
22816688--22816930
58
4.1
58
87
4
328
41
3
12
41
1.61
22816688--22816930
118
2.1
117
89
5
375
41
3
12
41
1.61
22818386--22818435
9
5.3
10
81
11
52
28
0
8
64
1.22
22818474--22818522
15
3.2
15
78
21
57
34
0
4
61
1.15
22818476--22818518
23
1.9
22
85
4
59
34
0
4
60
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22818510--22818561
19
2.8
20
83
13
67
23
0
0
76
0.78
22818521--22818561
19
2.2
19
95
4
75
19
0
0
80
0.71
22818529--22818571
18
2.3
19
80
8
52
25
2
0
72
0.97
22818551--22818647
32
3.2
28
81
15
88
22
8
3
65
1.33
22819505--22819558
18
3.1
18
83
2
56
9
1
3
85
0.80
22819505--22819558
8
6.4
8
78
17
56
9
1
3
85
0.80
22819579--22819653
19
3.6
22
71
18
63
13
8
2
76
1.12
22819702--22819726
12
2.1
12
100
0
50
24
24
0
52
1.48
22819714--22819897
57
3.2
56
91
3
296
44
8
10
36
1.69
22823702--22823757
9
6.0
9
89
10
78
89
0
10
0
0.49
22823703--22823758
10
5.6
10
93
6
96
91
0
8
0
0.43
22823700--22823775
20
3.8
19
78
14
82
84
0
11
3
0.76
22823702--22823767
20
3.2
20
83
10
89
86
0
12
1
0.64
22823703--22823759
1
57.0
1
82
0
69
91
0
8
0
0.43
22825020--22825248
40
5.9
38
89
8
347
23
18
22
35
1.95
22825256--22825298
10
4.3
10
88
5
61
88
9
0
2
0.60
22825259--22825303
11
3.9
11
85
8
63
86
11
0
2
0.65
22825256--22825305
21
2.4
20
87
9
73
88
10
0
2
0.61
22826426--22826682
42
6.1
42
87
8
389
23
17
22
36
1.95
22826426--22826682
125
2.0
124
90
6
412
23
17
22
36
1.95
22826689--22826739
10
5.3
10
79
6
61
88
9
0
1
0.60
22826692--22826737
12
3.9
11
86
13
65
86
10
0
2
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22826689--22826739
22
2.4
21
87
6
75
88
9
0
1
0.60
22826915--22826964
9
5.3
10
81
11
52
28
0
8
64
1.22
22826974--22827097
17
7.4
17
69
16
50
30
0
4
65
1.11
22827005--22827107
20
5.3
20
70
21
69
31
0
2
65
1.14
22827036--22827076
3
14.7
3
85
14
61
31
0
0
68
0.90
22827014--22827080
17
4.3
15
84
15
59
32
0
1
65
1.02
22827087--22827185
31
3.2
29
79
12
101
24
8
2
65
1.30
22827679--22827726
20
2.5
19
76
6
51
25
18
18
37
1.94
22828080--22828118
21
1.9
19
90
10
60
7
7
2
82
0.94
22828062--22828140
27
2.9
27
81
12
74
11
7
2
78
1.05
22828078--22828135
10
5.4
11
73
22
52
10
6
1
81
0.95
22828080--22828145
21
3.1
21
80
10
55
12
6
3
78
1.04
22828061--22828142
10
8.8
9
70
15
51
12
7
2
78
1.06
22828150--22828488
57
5.9
57
92
1
545
46
7
11
35
1.68
22828523--22828551
6
4.8
6
100
0
58
17
0
13
68
1.20
22829020--22829054
18
1.9
18
88
0
52
45
11
11
31
1.76
22833632--22833978
59
5.7
60
86
7
488
33
12
7
46
1.70
22833632--22833984
122
2.9
122
88
7
529
33
12
7
46
1.70
22836114--22836189
23
3.3
23
78
10
75
72
2
5
19
1.16
22838261--22838293
15
2.1
16
88
5
50
6
15
0
78
0.93
22840499--22840527
2
15.0
2
92
7
51
0
51
0
48
1.00
22842847--22842908
31
2.0
31
83
0
79
40
9
9
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22843196--22843242
21
2.3
22
78
14
55
48
0
10
40
1.38
22843570--22843595
2
13.0
2
100
0
52
50
0
0
50
1.00
22844017--22844059
12
3.5
12
79
14
52
44
0
4
51
1.22
22846422--22846447
2
13.0
2
100
0
52
50
0
0
50
1.00
22847349--22847389
2
20.5
2
100
0
82
48
0
0
51
1.00
22849412--22849443
2
16.5
2
93
6
57
53
0
0
46
1.00
22849453--22849496
22
2.0
22
100
0
88
45
4
27
22
1.72
22864474--22864509
2
18.0
2
100
0
72
50
0
0
50
1.00
22865474--22865630
52
3.0
52
84
1
181
40
8
22
27
1.84
22866455--22866483
11
2.6
11
100
0
58
20
0
27
51
1.47
22866510--22866666
52
3.0
51
84
5
181
41
8
23
26
1.83
22868434--22868477
22
2.0
22
86
4
63
54
2
9
34
1.44
22870203--22870229
2
13.5
2
100
0
54
51
48
0
0
1.00
22870229--22870254
2
13.0
2
100
0
52
50
0
0
50
1.00
22874713--22875018
153
2.0
153
89
1
470
31
18
12
37
1.88
22876170--22876208
13
2.9
13
92
3
60
33
0
0
66
0.92
22876250--22876368
22
5.3
23
74
17
108
26
5
0
67
1.19
22876250--22876355
46
2.3
45
81
12
119
26
6
0
66
1.23
22876300--22876342
19
2.1
21
83
8
54
25
4
0
69
1.07
22876284--22876380
46
2.2
46
82
12
114
24
4
2
69
1.17
22876663--22876713
23
2.2
23
82
0
66
31
1
15
50
1.55
22877293--22877367
5
14.4
5
79
12
80
14
5
2
77
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22877394--22877854
59
7.7
58
81
11
520
47
7
11
32
1.69
22877391--22877854
181
2.6
182
94
2
801
47
7
11
32
1.69
22878856--22878902
22
2.0
24
84
15
64
48
0
4
46
1.21
22890241--22890291
21
2.4
21
90
0
84
49
3
13
33
1.61
22896907--22896945
14
2.8
14
88
7
53
71
15
0
12
1.14
22897886--22897976
24
4.0
24
69
7
73
53
2
5
38
1.36
22899923--22899960
16
2.3
17
86
4
51
36
7
2
52
1.45
22900379--22900408
15
1.9
16
93
6
53
80
0
3
16
0.85
22900508--22900556
25
2.0
25
84
11
66
51
16
0
32
1.45
22903154--22903199
3
15.3
3
100
0
92
67
0
0
32
0.91
22905202--22905236
3
11.7
3
100
0
70
31
0
0
68
0.90
22911204--22911245
14
2.9
15
79
10
52
71
7
0
21
1.09
22911282--22911313
5
6.2
5
92
7
55
78
0
0
21
0.76
22911282--22911323
16
2.7
16
88
3
59
71
0
4
23
1.05
22911347--22911387
15
2.6
16
82
14
50
68
0
9
21
1.18
22911279--22911386
43
2.6
43
75
16
104
69
3
7
19
1.28
22911668--22911738
21
3.3
21
71
22
58
54
22
1
21
1.52
22911662--22911744
14
5.8
14
68
19
55
55
21
1
21
1.51
22911780--22911842
30
2.1
30
82
5
74
47
31
1
19
1.59
22913468--22913534
16
4.1
16
71
9
55
74
1
14
8
1.13
22913478--22913534
24
2.3
24
84
3
69
71
1
15
10
1.21
22913478--22913543
25
2.6
24
83
7
69
72
1
13
12
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22914398--22914445
15
3.3
15
77
11
55
29
20
8
41
1.81
22914406--22914458
13
4.0
12
79
13
52
26
22
9
41
1.84
22914398--22914459
28
2.2
28
88
5
90
29
20
8
41
1.81
22915364--22915465
46
2.3
45
80
13
113
38
6
10
44
1.66
22927078--22927128
19
2.6
20
78
3
68
84
3
5
5
0.87
22927078--22927128
10
5.2
10
78
2
50
84
3
5
5
0.87
22928387--22928707
102
3.1
102
86
1
439
21
18
14
45
1.84
22928489--22928645
34
4.6
34
72
9
113
20
17
13
48
1.81
22928731--22928834
39
2.8
36
75
9
111
21
15
14
49
1.80
22928682--22928905
74
3.1
73
78
6
247
20
18
12
48
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130