genome.fa.s556.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  98  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19113019--19113058	19	2.1	19	86	9	55	32	10	5	52	1.56
19113051--19113106	22	2.5	22	88	0	76	41	12	3	42	1.60
19113092--19113167	39	1.9	39	81	0	89	34	14	7	43	1.74
19113140--19113203	22	2.9	22	78	0	65	39	12	7	40	1.72
19113184--19113306	22	5.6	22	64	18	69	36	10	4	47	1.59
19113429--19113522	44	2.1	44	90	0	143	34	7	6	52	1.55
19113437--19113636	110	1.8	110	82	6	262	36	10	5	47	1.61
19113494--19113603	44	2.5	44	80	5	116	36	10	6	46	1.65
19113458--19113630	22	7.9	22	72	9	102	35	10	5	47	1.62
19114191--19114222	13	2.5	13	95	5	57	71	3	0	25	1.00
19116352--19116429	41	1.9	41	94	0	138	21	1	20	56	1.49
19116640--19116679	15	2.7	14	81	11	53	77	2	5	15	1.04
19122984--19123017	2	17.0	2	93	0	59	47	0	2	50	1.16
19123968--19124007	17	2.4	16	84	15	55	55	0	0	45	0.99
19138989--19139046	22	2.4	23	80	13	64	34	1	1	62	1.16
19139010--19139056	15	3.1	15	78	6	51	29	0	2	68	1.02
19139098--19139197	10	9.9	10	65	14	53	33	1	4	62	1.21
19139087--19139157	21	3.5	20	75	9	63	33	1	4	60	1.25
19139153--19139195	11	4.0	11	78	6	52	32	0	2	65	1.06
19141386--19141412	3	9.0	3	100	0	54	33	33	33	0	1.58
19145487--19145533	24	2.0	22	84	8	58	8	21	4	65	1.37
19146453--19146497	16	2.8	16	79	0	54	28	6	6	57	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19146560--19146597	16	2.4	16	86	8	51	26	0	2	71	1.00
19168453--19168496	21	2.1	21	91	4	72	22	2	11	63	1.38
19170683--19170723	22	2.0	22	90	9	68	7	12	4	75	1.16
19171845--19171888	16	2.9	15	87	9	63	75	0	22	2	0.92
19171845--19171888	5	8.8	5	85	9	63	75	0	22	2	0.92
19173371--19173435	5	12.2	5	75	15	51	26	1	1	70	1.04
19173371--19173424	26	2.2	24	83	6	63	25	1	1	70	1.07
19173645--19173683	13	2.9	13	88	3	51	28	10	15	46	1.78
19173663--19173701	20	2.0	20	89	0	60	30	12	17	38	1.88
19173981--19174025	24	2.0	22	86	8	63	24	4	0	71	1.05
19173980--19174040	32	1.9	31	86	6	86	27	3	0	68	1.05
19176005--19176036	16	1.9	16	93	6	55	15	3	0	81	0.82
19175999--19176071	12	6.2	12	78	15	57	21	2	0	75	0.93
19176000--19176095	7	14.1	7	73	16	60	25	2	0	72	0.95
19184035--19184099	20	3.2	20	84	4	87	15	4	27	52	1.62
19184063--19184259	101	2.0	101	91	2	324	26	4	21	47	1.70
19184536--19184602	6	11.3	6	72	24	54	17	2	0	79	0.86
19184535--19184604	15	4.6	15	77	19	65	18	2	0	78	0.87
19191308--19191362	4	13.8	4	88	0	74	70	1	5	21	1.16
19192757--19192919	43	3.8	43	85	4	231	42	15	13	28	1.84
19192744--19192952	86	2.4	85	88	2	303	42	16	13	28	1.86
19192757--19192952	43	4.6	43	82	5	227	42	15	12	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19192756--19192995	85	2.8	86	83	1	248	42	15	13	27	1.85
19197326--19197391	33	2.0	34	96	3	125	54	12	10	22	1.68
19202347--19202386	16	2.6	15	80	7	53	45	2	2	50	1.28
19204156--19204212	24	2.4	24	85	5	71	35	0	14	50	1.42
19204156--19204212	8	7.1	8	81	0	51	35	0	14	50	1.42
19207952--19208000	21	2.3	22	89	3	73	40	6	8	44	1.59
19211145--19211203	31	1.9	32	86	13	88	28	8	5	57	1.50
19212682--19212723	22	1.9	22	85	0	57	21	19	28	30	1.97
19215250--19215300	17	3.0	17	75	11	50	50	25	7	15	1.71
19215699--19215726	14	2.0	14	100	0	56	50	0	21	28	1.49
19221194--19221228	18	1.9	18	88	0	52	51	2	2	42	1.31
19221231--19221292	32	1.9	32	87	6	90	62	0	0	37	0.95
19221196--19221317	22	5.5	22	74	13	92	58	0	1	39	1.14
19221249--19221322	24	3.2	24	83	9	100	60	0	1	37	1.05
19221679--19221727	19	2.5	19	83	9	55	61	14	0	24	1.33
19223116--19223172	26	2.2	26	81	12	64	43	5	0	50	1.24
19223520--19223571	19	3.1	16	81	15	52	57	0	0	42	0.98
19223559--19223823	102	2.6	105	80	10	305	54	2	3	40	1.30
19223846--19223895	25	2.0	24	84	7	64	4	20	4	72	1.18
19226621--19226663	17	2.6	17	85	7	63	30	0	0	69	0.88
19226621--19226670	15	3.2	15	81	10	64	28	2	0	70	0.99
19226788--19226823	18	1.9	19	94	5	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19226802--19226890	24	3.8	24	79	5	101	53	5	0	40	1.24
19226799--19226890	47	2.0	47	95	4	168	55	5	0	39	1.23
19226884--19226918	17	2.1	17	94	0	61	51	0	2	45	1.16
19231206--19231241	2	18.0	2	94	0	63	47	0	0	52	1.00
19231253--19231283	6	5.2	6	100	0	62	51	16	0	32	1.44
19231566--19231642	21	3.6	21	72	8	66	32	3	10	53	1.53
19231983--19232064	22	3.8	22	80	1	85	39	7	3	50	1.48
19232129--19232179	21	2.6	19	82	11	66	39	11	3	45	1.59
19231980--19232173	87	2.2	86	76	10	191	39	9	5	45	1.60
19232174--19232315	22	6.5	22	74	1	88	35	11	5	46	1.64
19232372--19232445	33	2.3	33	83	2	96	37	8	4	50	1.51
19232425--19232476	22	2.4	22	80	0	59	34	11	7	46	1.69
19232507--19232560	22	2.5	22	90	0	81	44	12	0	42	1.43
19232555--19232609	22	2.5	22	85	5	67	36	3	9	50	1.51
19232900--19233008	22	5.0	21	78	10	103	39	5	7	47	1.55
19232898--19233008	44	2.5	43	77	11	125	39	5	7	47	1.54
19233059--19233126	22	3.1	22	86	0	91	36	7	7	48	1.59
19233196--19233298	22	4.8	21	76	10	82	35	7	5	50	1.55
19233215--19233443	22	10.5	22	72	5	133	34	8	6	50	1.59
19233473--19233581	22	5.0	22	76	6	96	33	7	6	52	1.55
19233473--19233587	44	2.6	44	79	2	106	33	8	6	51	1.58
19233522--19233640	44	2.7	45	81	5	127	29	5	10	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19233664--19233790	22	5.8	22	78	5	105	36	10	4	48	1.58
19233755--19233798	22	2.0	22	82	8	54	36	6	9	47	1.62
19233890--19234012	22	5.6	22	80	6	115	39	8	2	49	1.46
19233848--19234013	22	7.5	22	75	8	97	38	8	3	50	1.48
19234038--19234098	22	2.8	22	74	0	59	37	9	3	49	1.52
19234690--19234726	19	1.9	19	94	0	65	21	0	8	70	1.13
19234691--19234753	14	4.5	14	75	11	58	22	1	4	71	1.13
19234888--19234920	16	2.1	16	88	11	50	21	0	0	78	0.75
19235082--19235119	3	12.7	3	94	0	67	31	0	2	65	1.06
19236489--19236526	18	2.2	18	90	4	60	21	0	0	78	0.74
19236754--19236807	18	3.1	17	76	10	56	33	0	22	44	1.53
19236779--19236863	44	2.0	43	90	2	134	42	1	17	38	1.57
19242004--19242037	15	2.3	15	94	0	59	35	11	8	44	1.72
19243529--19243592	2	31.5	2	79	3	65	45	3	6	45	1.44
19245377--19245827	242	1.9	236	81	3	544	37	15	17	28	1.91
19252551--19252580	3	9.7	3	92	7	51	70	0	0	30	0.88
19252716--19252745	12	2.6	11	94	5	51	53	0	0	46	1.00
19257455--19257512	30	1.9	31	92	3	100	37	0	29	32	1.58
19260779--19260828	18	2.8	18	93	3	84	26	16	20	38	1.92
19261972--19262015	22	2.0	22	86	0	61	45	2	2	50	1.27
19262271--19262310	20	2.0	20	90	0	62	55	2	5	37	1.35
19262761--19263070	167	1.9	167	93	2	543	33	16	10	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19264882--19264931	22	2.3	22	89	6	75	46	6	0	48	1.27
19269484--19269534	22	2.3	22	96	0	93	27	21	17	33	1.96
19277729--19277780	4	13.0	4	82	8	61	26	1	3	67	1.18
19278589--19278616	11	2.5	11	100	0	56	75	0	0	25	0.81
19279429--19279471	21	2.1	21	86	4	61	74	4	2	18	1.10
19281880--19281947	28	2.5	26	81	11	75	72	5	5	16	1.25
19284381--19284451	22	3.2	22	78	9	81	45	12	9	32	1.75
19284552--19284734	43	4.2	43	74	13	149	43	13	7	36	1.71
19284538--19284783	44	5.6	43	72	12	148	44	11	6	36	1.68
19287062--19287105	17	2.6	17	85	0	61	50	13	6	29	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130