genome.fa.s556.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  90  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17630294--17630319	5	5.2	5	100	0	52	80	0	0	19	0.71
17631135--17631178	9	4.7	9	81	10	52	84	0	15	0	0.63
17631177--17631223	3	16.3	3	78	8	53	63	4	2	29	1.25
17631258--17631293	3	12.0	3	100	0	72	66	0	0	33	0.92
17631534--17632217	119	5.8	119	83	2	766	44	14	21	19	1.86
17631539--17632217	237	2.9	237	84	3	862	44	14	21	19	1.86
17632432--17632523	34	2.7	34	86	0	121	35	21	15	27	1.93
17632463--17632534	34	2.1	34	84	5	92	34	20	18	26	1.95
17643284--17643336	5	9.8	5	80	15	61	75	1	3	18	1.05
17644181--17644474	3	102.3	3	82	8	112	58	1	11	28	1.41
17644497--17644567	32	2.2	32	87	5	99	30	14	29	25	1.94
17655124--17655149	10	2.6	10	100	0	52	15	0	0	84	0.62
17656626--17656763	55	2.5	55	90	0	213	50	8	8	32	1.64
17656626--17656871	55	4.6	55	77	8	182	47	8	12	31	1.72
17656781--17656921	55	2.8	49	76	12	156	46	9	13	31	1.75
17656720--17656980	104	2.5	103	83	4	319	45	10	15	28	1.80
17662928--17662985	28	2.1	27	90	6	91	34	10	6	48	1.64
17667366--17667403	19	2.0	19	89	0	58	36	5	13	44	1.66
17669926--17669963	16	2.4	16	86	4	51	81	0	10	7	0.87
17670001--17670027	9	3.0	9	100	0	54	11	22	11	55	1.66
17670913--17670950	18	2.2	18	85	4	51	39	34	5	21	1.76
17671009--17671046	14	2.7	14	87	0	58	47	28	2	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17676314--17676408	48	2.0	48	89	0	145	35	17	7	38	1.78
17679067--17679118	7	7.4	7	93	0	77	1	3	25	69	1.16
17696878--17696915	20	1.9	20	88	0	58	36	10	7	44	1.68
17698358--17698460	52	2.0	52	90	0	161	47	6	16	29	1.72
17704000--17704033	2	17.0	2	100	0	68	50	0	50	0	1.00
17707319--17707396	38	2.1	38	95	0	138	17	6	21	53	1.66
17718341--17718370	9	3.3	9	95	0	51	73	0	0	26	0.84
17726152--17726446	59	5.0	58	78	8	285	37	10	5	46	1.60
17726140--17726446	121	2.6	121	80	7	316	37	10	5	46	1.60
17727358--17727386	6	4.8	6	100	0	58	13	0	0	86	0.58
17730210--17730245	2	18.5	2	94	5	65	50	0	0	50	1.00
17732751--17732794	3	14.7	3	100	0	88	31	0	0	68	0.90
17740855--17740904	13	3.8	13	82	10	50	54	6	4	36	1.44
17741758--17741808	20	2.6	20	84	3	68	50	0	0	49	1.00
17742062--17742139	37	2.1	37	79	13	88	52	0	3	43	1.19
17745414--17745465	21	2.5	21	90	6	79	50	0	0	50	1.00
17745414--17745465	22	2.5	22	93	6	90	50	0	0	50	1.00
17745450--17745501	14	3.6	14	75	10	50	57	0	0	42	0.98
17745438--17745509	30	2.4	30	83	4	83	55	0	0	44	0.99
17745453--17745491	16	2.4	16	86	0	51	61	0	0	38	0.96
17750123--17750190	19	3.4	19	75	15	73	50	2	2	44	1.32
17750115--17750180	23	3.1	22	70	24	68	43	4	3	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17755460--17755494	18	1.9	18	94	0	61	42	8	22	25	1.82
17757841--17757865	11	2.3	11	100	0	50	16	0	0	84	0.63
17757934--17757972	20	2.0	20	84	0	51	64	15	0	20	1.30
17768319--17768361	19	2.3	18	81	14	52	79	4	9	6	1.06
17770151--17770181	16	1.9	16	93	0	53	19	0	35	45	1.51
17770212--17770350	16	8.9	15	78	10	118	24	2	24	48	1.62
17770198--17770356	16	10.3	15	74	16	112	23	1	25	49	1.60
17770217--17770355	63	2.2	63	83	3	172	24	1	25	48	1.59
17771850--17771897	21	2.3	21	78	7	53	41	0	0	58	0.98
17773515--17773539	12	2.1	12	100	0	50	0	20	0	80	0.72
17775390--17775442	16	3.3	15	82	12	61	15	1	30	52	1.53
17775380--17775452	17	4.4	17	75	13	62	15	1	30	53	1.50
17775855--17775890	11	3.5	11	78	21	51	77	0	0	22	0.76
17775847--17775889	19	2.3	18	88	11	68	79	2	0	18	0.85
17776916--17776986	32	2.2	31	87	9	99	29	0	0	70	0.88
17777216--17777278	21	3.0	21	75	13	65	30	22	22	25	1.99
17777345--17777438	43	2.2	44	82	1	109	24	19	26	29	1.98
17777493--17777545	22	2.4	22	93	0	88	32	16	22	28	1.96
17777121--17777557	154	2.8	152	78	6	477	35	17	22	24	1.95
17777398--17777780	131	2.9	129	84	3	464	38	18	20	22	1.93
17777913--17778001	40	2.2	41	83	4	117	35	13	16	33	1.88
17778365--17778418	28	1.9	28	88	7	83	24	0	7	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17778365--17778424	30	2.1	28	87	6	84	25	0	6	68	1.14
17785479--17785526	20	2.2	23	78	21	75	56	10	4	29	1.52
17785484--17785531	20	2.4	20	100	0	96	52	10	4	33	1.55
17785651--17785679	14	2.0	15	93	6	51	41	3	0	55	1.17
17786137--17786170	14	2.3	15	90	5	52	2	0	44	52	1.16
17786180--17786255	17	4.6	16	73	11	64	21	1	25	52	1.54
17786180--17786255	33	2.3	33	84	8	93	21	1	25	52	1.54
17789358--17789406	25	2.0	24	84	11	64	63	4	2	30	1.24
17789404--17789438	12	2.9	12	86	0	52	68	5	2	22	1.24
17790335--17790435	50	2.0	50	100	0	202	36	9	15	37	1.81
17794575--17794599	12	2.1	12	100	0	50	0	8	0	92	0.40
17800087--17800113	12	2.2	12	100	0	54	51	7	33	7	1.58
17800915--17800941	2	13.5	2	100	0	54	51	0	0	48	1.00
17807085--17807121	18	2.1	18	100	0	74	51	10	10	27	1.70
17814269--17814320	24	2.1	25	85	3	70	76	5	5	11	1.13
17814309--17814350	19	2.2	20	91	8	70	80	2	2	14	0.90
17814283--17814350	18	3.8	18	80	7	77	77	2	4	14	1.04
17815170--17815212	22	2.0	20	86	8	59	74	0	20	4	1.00
17822136--17822175	19	2.0	19	85	9	53	25	2	15	57	1.50
17833610--17834052	226	2.0	225	88	0	652	36	18	13	31	1.90
17836221--17836261	13	3.1	13	85	3	55	41	0	0	58	0.98
17843188--17843220	1	33.0	1	93	0	57	96	0	3	0	0.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844821--17844935	33	3.5	32	77	13	101	50	12	9	27	1.71
17845057--17845091	19	1.9	17	88	11	52	54	11	5	28	1.59
17845019--17845128	20	5.6	20	71	14	86	51	10	4	32	1.57
17846775--17846839	25	2.6	26	82	4	71	46	6	29	18	1.73
17847055--17847088	11	3.1	11	82	0	50	32	0	20	47	1.51
17847045--17847088	22	2.0	22	95	0	79	29	0	20	50	1.49
17847109--17847212	52	2.0	51	87	5	147	46	7	18	27	1.76
17847698--17848092	203	2.0	202	85	3	544	18	15	17	47	1.82
17849972--17850019	17	2.8	16	87	9	60	70	0	2	27	0.98
17851382--17851425	23	2.0	23	90	4	72	43	0	2	54	1.12
17851372--17851432	22	2.9	22	80	9	74	42	0	1	55	1.09
17851421--17851454	13	2.6	13	90	0	59	55	0	0	44	0.99
17859039--17859082	22	2.0	22	90	0	70	34	11	11	43	1.77
17861544--17861596	27	2.0	27	85	7	72	54	0	7	37	1.29
17865118--17865174	22	2.8	20	78	17	55	19	1	31	47	1.60
17865210--17865308	30	3.3	29	80	6	101	24	0	26	49	1.50
17865218--17865356	74	1.9	73	80	12	160	23	0	30	46	1.52
17865248--17865334	45	2.0	44	84	8	115	25	0	28	45	1.53
17865290--17865353	30	2.1	31	85	5	87	20	0	34	45	1.51
17865604--17865645	21	2.0	22	90	4	68	30	0	4	64	1.14
17865896--17865955	25	2.4	25	80	0	75	20	13	36	30	1.90
17872541--17872578	15	2.4	16	86	4	51	34	5	2	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17876896--17876951	28	2.0	29	89	3	87	30	3	25	41	1.72
17880158--17880216	28	2.1	28	93	0	100	32	8	11	47	1.70
17888790--17888880	46	2.0	45	95	2	164	31	19	13	35	1.90
17893516--17893554	2	19.5	2	94	0	69	51	0	48	0	1.00
17893913--17893937	3	8.3	3	100	0	50	32	0	0	68	0.90
17894534--17894613	26	3.1	25	73	16	74	50	0	1	48	1.08
17910892--17911350	227	2.0	228	94	1	814	40	15	13	30	1.86
17915710--17915802	36	2.6	36	78	0	105	25	18	19	36	1.94
17915912--17916168	36	6.9	36	74	12	153	28	15	14	41	1.87
17917378--17917433	24	2.3	24	87	6	78	12	1	3	82	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130