genome.fa.s556.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  55  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11951045--11951271	113	2.0	113	96	0	418	22	23	14	39	1.91
11954165--11954277	20	5.9	20	74	12	103	47	12	6	33	1.66
11954399--11954460	24	2.6	24	87	7	90	53	8	3	35	1.47
11954546--11954674	53	2.4	53	83	2	152	50	11	6	31	1.65
11954600--11954662	33	1.9	32	87	3	90	52	7	6	33	1.56
11954637--11954685	20	2.5	20	82	0	53	59	10	2	28	1.41
11954645--11954713	32	2.2	32	89	0	102	56	10	4	28	1.51
11954695--11954757	22	2.9	22	90	2	92	50	12	7	28	1.68
11954582--11954870	55	5.3	53	74	9	172	53	11	5	29	1.58
11954816--11954875	24	2.8	20	77	18	75	51	8	5	35	1.54
11954582--11954851	108	2.5	106	73	13	262	54	11	5	29	1.58
11954830--11954938	24	4.6	24	79	6	123	53	6	3	36	1.44
11954867--11954971	47	2.3	45	85	6	131	54	4	2	38	1.36
11954960--11954999	16	2.4	16	83	4	53	52	7	5	35	1.51
11954977--11955037	20	3.3	18	78	13	70	52	9	8	29	1.63
11957156--11957186	15	2.1	15	93	0	53	25	3	0	70	1.02
11957592--11957659	28	2.4	28	85	0	82	47	17	17	17	1.84
11958100--11958124	5	5.0	5	100	0	50	80	0	0	20	0.72
11958723--11959121	141	2.8	141	81	8	418	42	10	13	33	1.79
11958797--11959121	142	2.3	141	84	7	410	40	11	14	33	1.82
11959701--11959905	107	1.9	105	79	9	229	53	14	15	17	1.73
11960636--11960731	35	2.8	34	76	9	95	55	9	14	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11960768--11960852	36	2.4	34	79	11	91	42	15	24	17	1.88
11963059--11963315	141	1.8	142	81	5	324	17	15	12	54	1.70
11966357--11966693	142	2.4	141	83	5	394	32	12	11	43	1.79
11967810--11967877	28	2.4	28	90	0	100	20	17	17	44	1.87
11967810--11967888	28	2.8	28	86	3	86	24	16	17	41	1.89
11978539--11978582	19	2.4	19	84	3	54	31	2	25	40	1.68
11978607--11978652	18	2.5	19	85	7	67	23	2	28	45	1.65
11978908--11979023	21	5.6	20	72	13	67	17	3	32	46	1.65
11978950--11979098	20	7.5	19	72	14	106	17	5	35	41	1.72
11978959--11979103	40	3.6	40	74	9	143	15	5	35	42	1.71
11979145--11979197	21	2.6	21	81	3	63	11	5	35	47	1.63
11989631--11989825	98	2.0	100	88	6	297	29	24	7	37	1.83
11993847--11994107	132	2.0	132	89	3	400	43	9	15	30	1.80
11994960--11995011	27	1.9	27	92	0	86	36	15	15	32	1.89
11996444--11996473	2	15.0	2	100	0	60	50	0	0	50	1.00
11998772--11998815	8	5.1	8	81	13	52	50	0	4	45	1.22
11998772--11998815	17	2.6	16	82	13	52	50	0	4	45	1.22
12008881--12008937	29	2.0	29	83	10	73	45	1	3	49	1.29
12010075--12010103	2	14.5	2	100	0	58	0	0	48	51	1.00
12011334--12011373	21	1.9	21	89	0	62	70	10	5	15	1.32
12011334--12011373	11	3.7	11	83	6	55	70	10	5	15	1.32
12018161--12018191	6	5.2	6	100	0	62	51	32	16	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12018953--12019068	34	3.5	33	79	10	112	39	5	12	42	1.66
12019637--12019667	15	2.1	15	93	0	53	51	16	6	25	1.68
12020567--12020720	80	1.9	80	97	0	290	42	14	15	26	1.86
12022662--12022696	15	2.3	15	95	0	61	48	17	0	34	1.47
12023687--12023743	22	2.4	24	73	26	59	26	3	1	68	1.15
12026097--12026132	18	2.0	18	89	10	56	52	19	11	16	1.73
12029973--12030252	55	5.1	55	76	3	231	18	18	19	42	1.89
12030028--12030237	111	1.9	110	81	2	251	20	20	19	39	1.93
12029970--12030273	166	1.8	166	81	4	380	20	19	18	42	1.90
12030170--12030274	55	1.9	55	84	0	138	19	19	20	41	1.90
12030466--12030665	5	38.6	5	76	12	140	36	3	6	54	1.40
12030581--12030678	3	35.0	3	73	20	88	33	2	3	61	1.23
12031514--12031637	10	11.5	10	68	18	54	17	1	4	76	1.02
12031552--12031636	15	5.3	15	68	26	50	20	0	4	75	0.98
12031532--12031577	17	2.8	17	75	15	51	21	0	2	76	0.90
12031512--12031640	35	3.7	34	78	11	111	18	1	4	75	1.06
12033815--12033863	21	2.3	21	85	0	71	20	8	22	48	1.75
12035001--12035182	71	2.5	73	77	9	167	32	14	23	29	1.95
12039057--12039137	27	3.0	25	80	10	81	48	25	9	16	1.77
12039080--12039129	13	3.8	13	86	5	73	54	28	4	14	1.58
12039038--12039135	14	7.2	14	77	9	69	52	21	8	18	1.71
12039078--12039137	13	4.6	12	82	13	66	50	26	8	15	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045226--12045271	11	4.1	11	80	5	56	84	2	13	0	0.71
12045234--12045276	13	3.1	13	78	15	50	81	0	18	0	0.69
12045234--12045276	14	3.0	14	78	18	52	81	0	18	0	0.69
12046731--12046836	31	3.3	31	76	9	97	34	20	18	25	1.96
12046856--12046929	33	2.2	33	88	4	105	32	16	16	35	1.91
12047016--12047204	35	5.4	35	71	3	121	16	20	10	51	1.74
12047281--12047382	35	2.9	35	79	5	100	20	19	7	51	1.71
12047447--12047521	35	2.1	35	82	4	89	14	20	16	49	1.80
12047465--12047939	70	6.8	69	73	6	323	16	17	12	52	1.74
12047504--12047942	35	12.6	35	74	4	267	16	17	12	52	1.74
12047814--12048003	104	1.8	105	82	1	247	18	19	10	51	1.74
12048409--12048487	34	2.3	34	86	0	113	20	18	8	51	1.72
12048522--12048602	35	2.3	35	84	0	108	14	14	7	62	1.51
12048893--12048925	5	6.6	5	90	10	50	81	18	0	0	0.68
12048901--12048960	8	7.6	8	70	10	52	81	15	1	1	0.85
12049273--12049314	22	1.9	22	90	9	68	71	0	2	26	0.98
12049940--12050000	23	2.7	23	82	10	72	70	11	14	3	1.28
12056316--12056362	21	2.2	21	96	0	85	23	17	23	36	1.95
12057040--12057090	13	3.8	13	94	2	84	41	23	7	27	1.82
12057027--12057106	13	6.0	13	85	4	70	45	20	6	28	1.75
12057027--12057100	26	2.7	27	81	4	87	44	21	6	27	1.77
12057083--12057118	13	2.8	14	84	16	51	50	22	5	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12061945--12061986	19	2.2	18	84	16	50	50	11	14	23	1.76
12068526--12068558	2	16.5	2	100	0	66	48	0	0	51	1.00
12072411--12072446	14	2.5	15	86	9	56	22	0	22	55	1.44
12072527--12072561	16	2.2	16	89	0	52	17	0	31	51	1.45
12072886--12072927	22	1.9	22	90	0	66	57	4	0	38	1.20
12073611--12073647	13	3.0	12	92	4	56	5	2	2	89	0.66
12073613--12073647	14	2.6	13	90	4	52	2	2	2	91	0.56
12075424--12075554	34	3.9	34	70	5	86	45	11	22	20	1.83
12075765--12075837	34	2.1	34	87	5	103	49	10	21	17	1.78
12074603--12075877	171	7.5	171	84	2	1515	46	11	19	22	1.82
12076133--12076184	22	2.4	22	87	6	70	26	13	26	32	1.94
12076075--12076412	133	2.5	134	84	2	423	38	17	20	23	1.93
12076485--12076549	22	3.0	22	82	8	87	30	12	26	30	1.92
12076897--12077009	41	2.8	41	84	10	142	30	15	21	33	1.94
12083759--12083856	14	6.7	14	75	9	63	20	0	31	47	1.50
12083759--12083925	15	11.0	15	72	14	96	19	1	31	47	1.57
12083758--12083930	47	3.7	45	78	11	136	20	1	31	46	1.58
12083758--12083925	16	11.0	16	73	15	142	19	1	31	47	1.57
12083816--12083949	32	4.3	30	71	17	96	19	2	31	46	1.65
12084521--12084567	22	2.2	22	85	11	62	6	25	48	19	1.72
12085006--12085047	14	3.2	13	80	9	50	2	9	7	80	0.97
12091373--12091415	10	4.2	10	88	5	50	72	2	25	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092586--12092732	51	2.9	51	78	3	152	36	9	18	35	1.83
12093213--12093307	25	3.8	25	76	18	92	20	5	2	72	1.14
12093245--12093307	5	12.6	5	71	18	51	19	4	1	74	1.08
12096695--12096750	10	5.7	10	82	4	78	82	8	5	3	0.94
12096692--12096750	19	3.1	19	92	4	100	83	8	5	3	0.91
12098918--12098983	34	1.9	34	90	0	105	34	18	7	39	1.79
12100470--12100515	19	2.5	17	80	16	56	41	10	21	26	1.86
12100625--12100668	17	2.4	19	88	7	65	11	4	40	43	1.61
12100658--12100727	20	3.5	20	82	1	88	14	1	37	47	1.53
12100658--12100709	27	1.9	27	84	0	68	15	1	34	48	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130