genome.fa.s556.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  112  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21881826--21881924	52	1.9	52	97	0	189	28	15	10	46	1.78
21889332--21889454	60	2.0	61	93	3	212	35	17	8	37	1.82
21893342--21893379	14	2.6	15	84	16	53	26	0	5	68	1.11
21893791--21893843	27	2.0	27	81	7	63	45	0	1	52	1.11
21893940--21893988	21	2.3	21	82	0	62	46	10	0	42	1.37
21894210--21894243	15	2.2	16	90	10	54	5	20	26	47	1.73
21894393--21894434	17	2.3	17	88	12	57	33	0	0	66	0.92
21894465--21894504	12	3.3	13	80	13	50	62	0	0	37	0.95
21900187--21900218	14	2.4	14	94	5	57	28	3	0	68	1.04
21900338--21900380	18	2.5	17	88	3	59	25	0	2	72	0.97
21900404--21900488	36	2.4	36	80	4	100	47	8	10	34	1.68
21900456--21900500	21	2.1	21	87	0	63	48	6	11	33	1.65
21900671--21900704	18	1.9	18	94	5	61	20	11	0	67	1.21
21909742--21909780	20	2.0	21	90	10	64	56	0	0	43	0.99
21909748--21909787	19	2.1	19	86	9	55	60	2	0	37	1.11
21909790--21909880	43	2.1	42	82	13	107	58	1	0	40	1.05
21912506--21912718	105	2.0	105	97	0	399	37	9	18	34	1.84
21925010--21925045	16	2.3	15	85	4	54	27	0	5	66	1.13
21926018--21926082	22	2.9	22	75	13	69	63	3	1	32	1.19
21926278--21926318	18	2.5	17	88	11	59	75	0	0	24	0.80
21946862--21946904	2	21.5	2	90	0	68	48	4	0	46	1.22
21955981--21956024	22	2.0	22	95	0	79	31	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21960119--21960161	22	2.0	22	95	0	77	32	11	11	44	1.77
21960301--21960351	24	2.1	24	89	7	77	19	19	9	50	1.75
21971836--21971905	35	2.0	35	83	2	88	18	31	21	28	1.97
21975543--21975567	13	1.9	13	100	0	50	48	0	12	40	1.40
21983235--21983278	16	2.9	15	76	6	52	40	0	0	59	0.98
21983928--21983962	10	3.9	9	89	10	54	0	8	0	91	0.42
21985334--21985374	15	2.6	16	84	7	66	48	2	0	48	1.14
21985578--21985611	18	1.9	18	94	5	61	55	0	0	44	0.99
21986071--21986141	23	3.2	22	70	18	58	50	1	0	47	1.09
21986048--21986104	29	2.0	28	83	13	71	52	0	1	45	1.11
21986077--21986144	22	3.0	24	75	14	72	51	1	0	47	1.09
21986669--21986693	13	1.9	13	100	0	50	88	4	0	8	0.64
21988677--21989155	135	3.6	132	78	5	482	42	10	5	41	1.62
21988694--21989155	133	3.5	131	79	5	428	43	10	5	40	1.63
21991192--21991246	24	2.2	25	80	9	67	23	18	20	38	1.93
21991197--21991245	24	2.0	24	88	0	71	22	20	20	36	1.95
22002421--22002479	29	2.0	29	100	0	118	45	13	13	27	1.81
22010156--22010185	6	5.0	6	91	0	51	30	33	20	16	1.94
22011158--22011195	19	2.1	18	90	5	58	28	0	2	68	1.03
22011152--22011200	19	2.5	20	77	19	57	30	0	2	67	1.02
22011535--22011623	29	3.0	30	74	9	83	40	11	1	47	1.47
22013146--22013174	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22013294--22013330	19	1.9	19	88	0	56	48	0	0	51	1.00
22021636--22021663	2	14.0	2	100	0	56	50	0	0	50	1.00
22026962--22027027	34	1.9	35	87	3	98	33	18	15	33	1.92
22035008--22035065	14	4.0	14	76	13	55	27	5	1	65	1.23
22035017--22035070	29	1.9	28	85	7	74	33	3	1	61	1.25
22035103--22035161	18	3.2	19	79	11	61	47	3	0	49	1.18
22039870--22039918	21	2.3	21	83	13	57	32	2	0	65	1.04
22039918--22039992	19	3.8	19	92	5	114	52	2	0	45	1.15
22045991--22046023	2	16.5	2	100	0	66	51	0	0	48	1.00
22046193--22046227	2	17.5	2	100	0	70	51	0	0	48	1.00
22051780--22052019	122	2.0	122	97	0	453	34	16	15	33	1.91
22053198--22053238	3	13.7	3	94	0	73	65	2	0	31	1.05
22054061--22054090	3	10.0	3	92	0	51	33	3	0	63	1.11
22054524--22054605	18	4.7	18	67	11	53	58	0	1	40	1.06
22054741--22054779	7	5.3	7	82	11	51	30	2	2	64	1.21
22054740--22054779	15	2.7	15	84	0	62	32	2	2	62	1.22
22055202--22055254	26	2.0	27	85	3	72	54	0	1	43	1.11
22056167--22056219	26	2.1	25	85	3	70	45	0	1	52	1.11
22061905--22061932	3	9.3	3	100	0	56	32	0	0	67	0.91
22069433--22069499	25	2.7	24	83	4	80	40	0	0	59	0.97
22074283--22074311	3	9.7	3	100	0	58	0	34	0	65	0.93
22076518--22076558	21	2.0	21	85	9	57	58	7	0	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22076523--22076571	26	2.0	26	84	15	68	63	6	0	30	1.19
22077820--22077846	14	1.9	14	100	0	54	37	0	3	59	1.15
22077851--22077908	27	2.1	28	84	9	75	56	1	0	41	1.09
22077850--22077910	28	2.2	29	80	14	74	57	1	0	40	1.08
22079214--22079246	17	1.9	17	93	0	57	54	12	9	24	1.66
22084894--22084949	22	2.6	21	75	10	60	42	7	1	48	1.41
22089056--22089100	16	3.2	13	82	14	54	48	0	2	48	1.13
22090669--22090848	90	2.0	90	97	0	342	43	22	12	20	1.86
22099253--22099363	55	2.1	53	80	9	140	39	0	8	52	1.31
22102849--22102902	27	2.0	27	85	3	72	59	12	12	14	1.62
22104102--22104144	16	2.7	16	77	0	50	37	0	2	60	1.10
22104132--22104192	22	2.8	21	83	11	79	47	3	0	49	1.18
22110785--22110819	16	2.1	16	89	5	52	51	11	0	37	1.38
22111381--22111441	17	3.4	19	70	30	53	37	0	1	60	1.07
22113515--22113573	23	2.7	22	84	7	75	30	1	1	66	1.12
22127329--22127361	16	2.1	16	94	0	57	21	12	0	66	1.23
22128794--22128819	3	8.7	3	100	0	52	65	0	0	34	0.93
22135040--22135070	16	1.9	16	93	0	53	54	3	0	41	1.16
22137438--22137521	30	2.8	30	80	10	100	46	4	9	39	1.58
22137742--22137803	27	2.4	26	86	5	81	33	4	6	54	1.47
22140524--22140561	17	2.2	18	85	4	51	28	0	0	71	0.87
22143011--22143045	17	2.1	17	88	0	52	42	2	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22143207--22143283	39	2.0	39	87	5	111	37	6	3	51	1.46
22156620--22156668	23	2.1	23	88	0	71	46	18	4	30	1.67
22159590--22159625	11	3.3	11	84	0	54	30	0	25	44	1.54
22159647--22159802	52	3.0	52	80	10	185	44	7	19	28	1.78
22160341--22160449	49	2.2	50	78	6	114	34	8	37	19	1.82
22160347--22160449	25	4.2	25	74	7	77	34	7	37	19	1.81
22160694--22160737	11	3.8	12	82	8	56	20	2	25	52	1.58
22160692--22160736	23	2.0	22	91	4	72	22	2	26	48	1.62
22160796--22160920	52	2.4	51	81	6	128	37	9	24	28	1.87
22163152--22163219	30	2.3	31	87	7	104	42	1	1	54	1.18
22163295--22163355	26	2.2	26	88	8	86	52	0	1	45	1.10
22163301--22163355	16	3.4	16	79	16	51	50	0	1	47	1.11
22168178--22168217	17	2.5	17	92	8	66	70	0	0	30	0.88
22168879--22168909	14	2.1	15	94	5	55	29	22	6	41	1.78
22176484--22176540	30	1.9	30	85	7	80	42	1	33	22	1.64
22180968--22181011	22	2.0	23	90	4	72	22	4	2	70	1.17
22180973--22181019	17	2.8	17	80	9	51	19	6	2	72	1.17
22180968--22181025	22	2.6	21	81	8	62	17	8	1	72	1.18
22182213--22182388	81	2.2	81	85	2	228	25	24	17	32	1.97
22183546--22183643	44	2.2	46	83	10	132	48	6	13	31	1.66
22184103--22184164	32	1.9	32	90	0	97	56	14	0	29	1.39
22184173--22184477	41	7.5	41	90	4	265	53	13	5	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22184173--22184560	21	19.0	21	73	13	287	52	13	5	28	1.62
22184266--22184560	41	7.2	41	87	5	361	53	13	5	27	1.62
22184558--22184631	20	3.7	20	92	0	112	52	8	8	31	1.60
22184558--22184650	40	2.3	40	83	1	105	51	9	6	32	1.60
22184793--22184822	12	2.5	12	88	0	51	80	0	20	0	0.72
22185628--22186268	43	15.1	42	79	8	586	39	17	13	29	1.88
22185628--22186268	169	3.8	168	82	7	728	39	17	13	29	1.88
22187179--22187210	16	1.9	17	93	6	57	21	0	3	75	0.95
22187226--22187458	4	57.2	4	68	14	88	25	3	2	68	1.16
22187239--22187406	21	7.7	21	70	19	78	27	2	1	67	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130