genome.fa.s556.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  91  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17917398--17917429	16	1.9	16	93	6	55	15	0	3	81	0.82
17917444--17917495	3	17.3	3	100	0	104	32	0	0	67	0.91
17917872--17917904	16	2.1	16	94	0	57	69	6	3	21	1.24
17918008--17918061	20	2.9	19	86	10	76	74	0	5	20	1.02
17918009--17918062	29	1.9	27	85	14	74	74	0	5	20	1.02
17921448--17921701	28	8.9	28	79	10	205	19	0	31	48	1.52
17921462--17921677	57	3.8	55	80	7	177	19	0	30	49	1.53
17921873--17921944	3	24.3	3	88	2	74	41	0	0	58	0.98
17921870--17921916	23	2.0	23	91	0	76	48	0	0	51	1.00
17922104--17922133	3	10.0	3	100	0	60	33	0	0	66	0.92
17922117--17922183	32	2.1	31	83	8	82	25	5	1	67	1.22
17921915--17922300	189	2.1	189	93	1	661	36	10	3	49	1.55
17922303--17922351	19	2.8	17	80	14	64	22	2	6	69	1.21
17922303--17922350	17	2.8	17	78	12	53	22	2	6	68	1.23
17921915--17922352	189	2.3	188	88	4	553	34	9	4	51	1.54
17923603--17923640	14	2.9	13	84	11	51	26	0	0	73	0.83
17933392--17933444	23	2.3	22	75	12	54	33	3	1	60	1.26
17936934--17937008	37	2.0	37	100	0	150	32	24	16	28	1.96
17942508--17942769	58	4.6	56	73	12	176	35	8	6	49	1.60
17942521--17942671	60	2.6	57	81	10	171	31	11	7	49	1.67
17942464--17942843	58	6.6	56	74	10	164	35	10	5	48	1.61
17942680--17942838	56	2.8	57	79	10	173	40	11	3	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17942504--17942872	58	6.4	55	70	14	165	34	10	5	48	1.62
17942509--17942872	57	6.3	56	73	10	193	34	10	6	49	1.62
17944045--17944117	35	2.1	35	89	5	112	27	10	35	26	1.90
17961523--17961554	2	16.0	2	93	0	55	53	0	0	46	1.00
17961670--17961696	13	2.1	13	100	0	54	44	0	0	55	0.99
17963374--17963439	24	2.8	24	86	4	80	40	13	3	42	1.60
17963614--17963718	22	4.8	22	85	0	129	37	1	9	51	1.46
17963626--17963762	22	6.2	22	74	12	102	39	4	9	46	1.56
17963933--17964006	22	3.4	22	77	7	78	36	8	6	48	1.59
17963933--17964017	44	1.9	44	83	4	109	38	9	5	45	1.61
17964280--17964334	22	2.5	22	85	2	67	38	10	9	41	1.72
17964362--17964424	11	5.9	10	76	12	54	42	6	1	49	1.37
17964362--17964424	32	2.0	32	96	0	117	42	6	1	49	1.37
17964388--17964465	22	3.6	21	79	8	68	42	5	7	44	1.55
17964513--17964606	22	4.2	22	78	8	100	40	10	4	44	1.59
17964660--17964707	22	2.2	22	81	7	53	31	8	8	52	1.61
17964741--17965154	22	18.7	22	71	11	184	34	8	5	50	1.58
17965469--17965639	22	7.9	22	68	13	68	35	10	2	50	1.52
17965913--17965948	18	2.1	18	89	5	56	44	0	2	52	1.15
17966058--17966091	17	2.0	17	88	11	52	70	5	14	8	1.31
17968106--17968410	153	2.0	154	88	3	463	47	5	5	41	1.49
17968422--17968464	2	21.5	2	86	9	61	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17969476--17969532	30	1.9	30	85	7	80	31	7	7	54	1.54
17977044--17977090	19	2.4	19	83	13	60	63	4	0	31	1.13
17977158--17977190	16	2.2	16	89	10	52	63	0	0	36	0.95
17981525--17981571	14	3.3	14	72	16	51	17	6	17	59	1.57
17981579--17981668	21	4.3	22	83	8	91	30	6	12	51	1.65
17985516--17985576	21	2.8	22	85	14	74	85	0	13	1	0.68
17985516--17985563	10	5.2	9	83	11	53	87	0	10	2	0.62
17985516--17985578	23	2.9	22	84	9	76	85	0	12	1	0.66
17985516--17985578	11	6.0	10	84	15	83	85	0	12	1	0.66
17986990--17987133	46	3.2	45	72	8	139	34	7	11	46	1.68
17986970--17987162	90	2.2	90	82	4	239	35	7	12	44	1.71
17987502--17987551	17	2.9	17	87	0	64	30	12	18	40	1.86
17987686--17987756	17	4.2	17	79	0	70	35	9	14	40	1.79
17987663--17987913	82	3.1	80	79	5	247	37	9	13	40	1.76
17987898--17987930	17	1.9	17	93	0	57	33	12	18	36	1.88
17987994--17988044	17	2.9	18	73	5	59	35	19	11	33	1.88
17988064--17988102	18	2.2	18	86	4	53	43	7	10	38	1.67
17988127--17988175	16	2.9	17	75	22	57	40	14	12	32	1.83
17989150--17989207	30	1.9	30	89	0	89	29	10	13	46	1.77
17991614--17991743	31	4.2	31	70	23	96	57	20	0	20	1.45
17991599--17991781	58	3.2	59	85	3	239	57	18	1	22	1.49
17992079--17992215	62	2.2	61	81	3	157	27	7	17	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17992079--17992259	63	2.8	63	79	6	177	25	8	16	49	1.73
17992930--17992993	24	2.6	25	85	7	85	29	0	1	68	0.99
17992934--17992992	16	3.8	16	77	8	59	28	0	1	69	0.98
17992983--17993030	19	2.5	19	93	3	78	47	0	0	52	1.00
17994674--17994707	6	5.7	6	90	10	52	61	0	2	35	1.11
17994678--17994722	13	3.4	13	87	9	56	57	0	8	33	1.30
17995214--17995247	18	1.9	17	88	5	50	67	0	2	29	1.05
17996887--17996927	20	2.0	22	85	9	59	21	0	4	73	1.02
18002519--18002631	21	5.5	21	74	11	81	29	13	11	46	1.78
18002571--18002638	21	3.4	20	78	8	75	22	13	11	52	1.72
18002553--18002678	40	3.2	40	81	2	128	23	15	12	48	1.79
18002616--18002705	40	2.2	40	84	3	119	22	18	14	44	1.86
18002781--18003012	20	11.6	20	76	3	180	32	21	15	30	1.94
18002781--18003012	60	3.9	60	79	2	207	32	21	15	30	1.94
18002793--18002945	80	1.9	80	85	2	209	33	20	15	30	1.94
18003102--18003283	45	4.1	45	79	4	181	37	8	10	42	1.71
18003091--18003164	21	3.4	21	70	7	67	35	6	10	47	1.65
18003122--18003238	21	5.2	23	67	17	75	41	8	11	39	1.71
18003106--18003287	90	2.0	89	82	5	215	36	9	10	43	1.72
18003218--18003364	77	1.9	77	83	2	188	36	10	8	43	1.71
18003362--18003537	38	4.6	37	76	9	145	31	7	16	44	1.75
18003566--18003681	23	5.0	23	71	3	79	36	6	8	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18004434--18004493	12	4.8	13	76	15	56	65	0	0	35	0.93
18004437--18004475	16	2.4	16	82	0	51	64	0	0	35	0.94
18004433--18004494	22	2.8	22	73	7	63	64	0	0	35	0.94
18009117--18009150	18	1.9	18	88	5	52	70	0	23	5	1.09
18012882--18012925	3	14.7	3	100	0	88	65	0	0	34	0.93
18013608--18013656	23	2.1	23	100	0	98	34	8	14	42	1.75
18013608--18013669	23	2.8	23	90	4	83	32	9	14	43	1.78
18015981--18016125	16	9.2	16	76	14	149	18	2	31	48	1.60
18015973--18016125	31	4.9	31	81	8	177	18	1	31	47	1.60
18015909--18016120	16	14.5	14	71	18	123	18	1	32	48	1.57
18016015--18016120	47	2.2	49	85	6	137	21	2	30	45	1.66
18015981--18016098	7	15.4	7	69	16	58	17	2	30	49	1.60
18017653--18017694	3	14.0	3	90	9	68	30	2	0	66	1.04
18025981--18026037	20	2.8	21	79	12	64	29	10	5	54	1.56
18025987--18026037	20	2.5	21	83	6	68	29	9	5	54	1.56
18032058--18032105	18	2.7	17	75	9	51	68	4	2	25	1.18
18033140--18033252	59	1.9	59	88	0	172	27	11	4	56	1.53
18033601--18033635	7	4.9	7	89	3	52	11	5	0	82	0.82
18033601--18033639	14	2.8	14	88	7	53	10	7	0	82	0.86
18034246--18034370	41	3.1	39	80	13	146	42	21	13	22	1.88
18035452--18035607	79	2.0	79	80	2	179	32	23	7	37	1.82
18036205--18036298	8	11.8	8	75	18	72	9	13	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18036213--18036298	31	2.7	31	87	5	120	9	13	0	76	1.01
18036257--18036305	22	2.2	22	86	13	66	12	10	0	77	0.99
18040283--18040413	59	2.2	59	82	5	158	22	10	5	61	1.49
18041208--18041249	20	2.1	20	95	0	75	42	26	2	28	1.67
18041214--18041257	20	2.2	20	91	0	70	47	25	0	27	1.52
18042190--18042236	21	2.2	21	96	0	85	38	6	21	34	1.79
18042787--18042865	40	2.0	40	82	5	97	45	5	1	48	1.32
18042839--18042868	12	2.6	11	94	5	51	40	3	0	56	1.16
18064923--18065062	73	1.9	73	89	0	217	33	15	20	30	1.94
18067464--18067507	10	4.2	10	81	18	54	20	0	0	79	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130