genome.fa.s556.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  84  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16687001--16687043	16	2.6	16	75	17	52	76	0	13	9	1.01
16688051--16688180	41	3.1	41	83	1	152	27	15	22	34	1.94
16688119--16688287	85	2.0	88	89	3	263	27	12	17	42	1.85
16688119--16688242	43	2.9	42	72	17	121	29	12	16	41	1.86
16688051--16688261	41	5.0	42	75	11	146	27	14	19	38	1.90
16688487--16688562	19	3.8	20	81	13	93	23	0	5	71	1.07
16688500--16688552	20	2.5	21	84	12	72	22	0	7	69	1.13
16688489--16688720	4	58.8	4	65	19	53	29	3	3	64	1.23
16688500--16688563	23	3.0	21	80	15	69	25	0	6	68	1.12
16688594--16688751	22	7.3	21	74	15	101	30	5	1	62	1.26
16688590--16688718	20	5.9	23	80	11	130	31	4	1	62	1.25
16688611--16688718	42	2.6	41	83	8	128	31	4	1	62	1.26
16688508--16688684	59	2.9	58	74	15	153	31	2	2	63	1.23
16688591--16688721	16	7.4	17	72	19	65	31	4	1	62	1.24
16688551--16688700	69	2.3	66	82	9	182	32	4	2	61	1.26
16689531--16689636	4	25.8	4	75	17	53	17	1	3	76	1.03
16689529--16689638	17	6.2	17	71	15	55	17	1	3	77	1.00
16689536--16689644	18	5.9	17	72	19	60	17	1	4	76	1.05
16689579--16689644	28	2.4	26	85	9	87	13	3	3	80	0.95
16689765--16689863	28	3.5	28	69	24	89	46	5	12	36	1.63
16689661--16689941	58	4.8	57	92	2	420	42	7	12	38	1.70
16691227--16691264	3	12.7	3	100	0	76	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16692758--16692858	41	2.5	40	82	4	114	43	13	12	29	1.82
16692839--16692934	42	2.3	42	87	7	135	46	16	10	26	1.79
16693106--16693198	42	2.2	40	81	12	100	46	17	10	25	1.80
16693165--16693424	114	2.3	114	80	2	281	38	16	12	32	1.86
16692843--16693374	263	2.0	264	86	2	732	39	16	13	30	1.87
16704309--16704338	15	2.0	15	93	0	51	76	0	10	13	1.01
16704392--16704666	57	4.8	57	88	4	394	37	14	6	41	1.72
16704555--16704647	30	3.2	30	63	27	72	38	13	6	40	1.71
16704392--16704667	58	4.8	58	90	3	405	36	14	6	42	1.72
16704715--16704783	25	2.7	23	78	14	66	63	2	0	33	1.09
16705602--16705759	24	6.3	26	75	15	136	62	0	5	32	1.17
16705648--16705763	4	29.2	4	70	13	53	63	0	3	32	1.11
16705608--16705756	50	3.1	51	85	11	192	60	0	5	34	1.20
16705703--16705750	19	2.6	18	84	15	62	66	0	2	31	1.03
16705651--16705753	20	4.8	20	72	23	68	62	0	3	33	1.14
16706695--16706747	20	2.7	19	91	8	88	24	16	26	32	1.97
16707317--16707354	18	2.1	18	90	0	58	39	18	2	39	1.65
16707602--16707634	6	5.5	6	96	0	57	21	0	66	12	1.23
16709158--16709302	73	2.0	73	91	0	236	24	29	18	26	1.98
16712274--16713150	440	2.0	440	92	0	1479	27	16	13	42	1.86
16714332--16714365	14	2.5	14	95	4	61	44	17	5	32	1.73
16715614--16715647	9	3.7	9	84	7	50	2	11	0	85	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16715668--16716013	41	8.1	40	74	15	198	37	21	15	25	1.93
16715680--16715907	41	5.4	41	81	6	217	36	19	17	26	1.94
16715718--16715915	83	2.4	83	85	5	258	37	17	16	28	1.92
16727712--16727762	8	7.0	7	84	10	59	66	0	0	33	0.92
16728584--16728719	51	2.6	51	84	7	177	59	0	5	34	1.22
16728602--16728728	29	4.5	28	77	16	111	58	0	7	34	1.25
16728689--16728730	17	2.6	16	88	7	59	61	0	2	35	1.09
16729220--16729244	12	2.1	12	100	0	50	76	8	0	16	1.02
16729818--16729850	14	2.4	14	90	5	50	30	3	0	66	1.06
16731251--16731329	6	13.7	6	69	15	51	74	0	6	18	1.02
16731236--16731282	15	3.0	15	79	14	51	78	0	2	19	0.85
16732108--16732174	3	23.3	3	79	8	50	62	0	1	35	1.04
16732146--16732176	8	3.8	8	91	8	53	64	0	0	35	0.94
16732203--16732234	3	10.7	3	100	0	64	34	0	31	34	1.58
16732233--16732302	3	24.0	3	89	5	108	65	1	1	31	1.10
16732582--16732913	176	1.9	176	80	2	389	47	15	17	18	1.83
16732891--16733046	66	2.4	66	82	3	181	48	12	21	17	1.81
16733152--16733298	66	2.2	66	80	3	172	46	10	22	19	1.81
16738843--16738874	17	1.9	16	93	6	55	15	0	0	84	0.63
16738842--16738881	9	4.7	9	87	9	57	17	2	0	80	0.83
16738842--16738880	17	2.3	17	81	0	51	17	2	0	79	0.84
16738939--16738979	22	1.9	21	85	14	57	80	2	0	17	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16738948--16738978	14	2.2	14	94	0	53	80	3	0	16	0.83
16740834--16740881	26	2.0	25	84	12	64	12	12	8	66	1.44
16742297--16742354	18	3.3	17	79	13	64	20	0	10	68	1.18
16742296--16742378	18	4.6	18	73	8	51	20	0	10	68	1.19
16742334--16742376	13	3.4	13	81	12	54	18	0	9	72	1.11
16742396--16742434	16	2.5	15	88	12	60	84	0	12	2	0.72
16743348--16743393	12	3.8	12	82	0	56	8	6	2	82	0.91
16743859--16743934	40	1.9	40	86	0	107	26	10	6	56	1.57
16747465--16747532	10	6.8	10	75	9	50	83	5	2	7	0.88
16747498--16747532	11	3.2	11	87	0	52	88	8	2	0	0.61
16748482--16748587	22	4.9	22	68	8	65	32	8	13	46	1.73
16748815--16748873	17	3.4	17	71	15	50	40	13	5	40	1.67
16748816--16748881	34	1.9	35	87	9	100	40	13	6	39	1.69
16748865--16748898	17	1.9	18	88	5	52	44	11	11	32	1.77
16748818--16748892	34	2.2	35	80	7	82	40	14	8	37	1.76
16749022--16749086	18	3.7	18	82	12	80	32	9	13	44	1.76
16749569--16749633	6	10.8	6	83	6	60	21	0	9	69	1.16
16749558--16749633	18	4.2	18	79	17	77	19	2	9	68	1.29
16749570--16749646	35	2.2	35	84	9	95	20	0	9	70	1.14
16750616--16750658	16	2.7	15	82	13	50	9	4	2	83	0.87
16750616--16750660	17	2.6	17	79	6	56	8	6	2	82	0.93
16750685--16750732	14	3.4	14	75	16	53	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16750684--16750731	15	3.3	15	88	5	71	29	0	0	70	0.87
16750837--16750880	23	2.0	24	86	13	67	40	2	4	52	1.34
16750840--16750896	27	2.1	28	83	3	71	38	3	5	52	1.41
16751177--16751220	17	2.5	17	81	3	52	50	6	0	43	1.29
16751739--16751773	2	17.5	2	93	0	61	48	0	2	48	1.16
16752434--16752470	15	2.5	15	90	0	56	45	0	0	54	1.00
16756088--16756120	15	2.1	16	88	5	50	39	0	3	57	1.14
16758045--16758093	13	4.0	13	76	12	50	22	0	2	75	0.90
16758058--16758097	11	3.8	11	87	12	50	20	0	5	75	0.99
16759360--16759398	3	13.0	3	100	0	78	66	0	0	33	0.92
16759380--16759435	29	1.9	29	75	13	53	71	3	0	25	1.02
16759604--16760107	39	13.3	39	77	7	439	41	21	11	25	1.86
16759604--16760113	77	6.7	77	81	6	583	41	21	11	25	1.86
16759604--16760113	150	3.4	150	86	2	646	41	21	11	25	1.86
16759997--16760068	33	2.2	33	84	0	90	38	23	13	23	1.91
16760481--16760525	19	2.4	19	100	0	90	24	24	13	37	1.91
16772209--16772257	17	2.9	17	82	11	66	26	0	0	73	0.83
16772492--16772538	21	2.2	22	84	3	60	76	4	6	12	1.12
16772669--16772693	11	2.3	11	100	0	50	8	8	0	84	0.79
16775097--16775125	5	5.8	5	100	0	58	41	0	58	0	0.98
16781081--16781114	15	2.3	15	90	5	52	52	2	0	44	1.16
16781177--16781382	61	3.2	61	69	19	193	40	7	2	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16781233--16781455	71	3.3	70	70	19	227	43	7	3	45	1.48
16781134--16781453	132	2.4	132	94	0	543	42	7	3	45	1.51
16781134--16781507	132	2.9	128	89	6	496	42	7	3	46	1.49
16783671--16783710	13	3.0	13	85	3	53	87	2	2	7	0.71
16784032--16784077	19	2.4	19	88	0	65	39	10	15	34	1.82
16784046--16784098	19	2.7	19	88	2	70	35	7	16	39	1.78
16791114--16791142	10	3.0	10	95	5	51	79	0	10	10	0.94
16791106--16791142	9	4.2	9	83	16	51	81	0	8	10	0.89
16792308--16792378	33	2.2	33	89	0	106	26	14	21	38	1.91
16792665--16792922	43	6.0	43	77	3	214	25	13	16	44	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130