genome.fa.s556.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  32  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8153848--8153878	3	10.3	3	100	0	62	67	0	0	32	0.91
8153877--8153934	3	19.0	3	96	3	107	34	0	0	65	0.93
8154008--8154040	3	11.3	3	87	6	50	60	3	0	36	1.12
8154296--8154320	3	8.3	3	100	0	50	36	0	0	64	0.94
8156143--8156187	19	2.4	19	88	3	65	33	2	2	62	1.20
8156142--8156185	18	2.3	20	80	11	56	31	2	2	63	1.19
8157181--8157247	28	2.4	27	81	15	84	14	4	11	68	1.35
8158275--8158306	15	2.1	16	94	5	57	46	0	0	53	1.00
8160863--8160896	2	17.0	2	93	0	59	47	0	2	50	1.16
8161508--8161611	50	2.1	50	94	0	181	45	3	9	41	1.55
8163449--8163515	34	2.2	28	80	17	71	53	2	1	41	1.25
8164481--8164510	13	2.2	14	94	5	53	13	13	6	66	1.43
8173783--8173823	21	2.0	21	95	0	73	58	9	9	21	1.59
8179440--8179476	15	2.5	15	91	4	58	27	5	27	40	1.78
8179583--8180092	255	2.0	254	96	0	939	34	8	16	40	1.80
8180474--8180528	21	2.6	22	77	8	62	30	27	21	20	1.98
8183308--8183362	5	10.6	5	79	14	58	80	1	3	14	0.94
8189278--8189357	33	2.5	32	81	2	88	30	8	18	42	1.81
8189857--8189923	32	2.1	33	88	2	100	31	16	13	38	1.87
8189857--8189933	33	2.4	32	86	6	102	29	15	14	40	1.87
8190246--8190319	31	2.4	31	93	0	121	28	16	17	37	1.91
8190451--8190571	50	2.5	49	80	6	129	28	14	12	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8193231--8193278	4	12.8	4	79	16	50	72	0	2	25	0.95
8193191--8193277	24	3.6	23	77	18	79	70	0	1	28	0.95
8193192--8193279	37	2.4	36	79	9	97	70	0	1	28	0.95
8193400--8193442	18	2.3	18	80	4	50	62	6	0	30	1.21
8193688--8193743	20	2.8	20	86	5	69	80	1	7	10	0.97
8199991--8200074	46	1.9	42	88	9	123	60	7	15	16	1.56
8202840--8202868	15	2.0	15	93	6	51	13	10	0	75	1.04
8202919--8202943	13	1.9	13	100	0	50	72	8	12	8	1.29
8204253--8204286	18	1.9	17	94	5	59	14	0	2	82	0.79
8204253--8204287	14	2.5	13	86	13	52	14	0	2	82	0.77
8214710--8214772	28	2.2	28	97	0	117	30	25	7	36	1.84
8218416--8218461	23	2.0	23	87	8	67	30	23	10	34	1.89
8218812--8218866	27	2.0	27	89	0	83	16	21	16	45	1.85
8219073--8219182	32	3.5	32	78	2	89	22	20	9	48	1.77
8219121--8219200	32	2.5	32	83	0	88	23	26	8	41	1.83
8224524--8224557	17	2.0	17	88	0	50	32	26	11	29	1.92
8233629--8233669	18	2.3	19	79	8	50	29	12	7	51	1.66
8250221--8250294	37	2.0	37	100	0	148	16	13	24	45	1.83
8253163--8253231	26	2.7	26	90	0	111	28	30	7	33	1.84
8255250--8255283	7	4.9	7	96	0	59	17	26	14	41	1.88
8260274--8260316	12	3.3	12	81	12	50	0	25	0	74	0.82
8268090--8268135	22	2.1	22	91	0	74	34	10	10	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8268380--8268447	25	2.7	25	86	0	91	22	29	16	32	1.95
8272145--8272188	22	2.0	22	90	0	70	34	11	11	43	1.77
8294284--8294311	2	14.0	2	100	0	56	50	50	0	0	1.00
8295079--8295215	67	2.0	67	95	0	247	33	18	16	32	1.93
8299497--8299538	22	1.9	22	90	0	66	33	11	9	45	1.73
8299787--8299853	3	22.3	3	100	0	134	32	0	0	67	0.91
8306162--8306196	2	17.5	2	87	0	52	51	0	2	45	1.16
8307511--8307543	13	2.4	14	85	10	50	48	0	9	42	1.35
8315700--8315734	12	2.9	12	91	8	54	0	8	0	91	0.42
8315699--8315733	9	4.0	9	88	7	54	0	11	0	88	0.51
8317048--8317072	2	12.5	2	100	0	50	48	0	0	52	1.00
8318338--8318388	24	2.1	24	82	7	59	56	0	3	39	1.18
8318455--8318501	13	3.7	13	83	8	53	42	0	2	55	1.12
8320772--8320822	18	2.7	19	76	14	52	17	29	29	23	1.97
8323162--8323196	18	2.0	17	88	5	52	14	5	2	77	1.07
8339359--8339403	10	3.9	12	75	19	51	57	0	2	40	1.11
8340310--8340335	2	13.0	2	100	0	52	50	0	0	50	1.00
8340453--8340503	26	1.9	26	88	4	75	41	0	7	50	1.31
8341836--8341875	20	2.1	20	86	9	57	52	2	2	42	1.28
8341872--8342012	76	1.9	75	82	10	180	43	8	2	44	1.49
8341854--8341977	38	3.2	38	70	22	98	45	6	2	45	1.42
8341880--8341993	37	3.0	36	72	18	97	42	7	1	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8343962--8344002	14	3.0	14	92	3	66	53	0	2	43	1.13
8344149--8344250	35	3.1	31	76	19	100	39	0	2	56	1.21
8344161--8344207	13	4.0	12	76	23	55	42	0	2	55	1.12
8344156--8344258	18	6.0	17	72	18	88	42	0	2	54	1.15
8346468--8346504	18	2.2	18	85	9	51	40	0	5	54	1.24
8348438--8348685	125	2.0	125	91	0	397	35	10	14	39	1.80
8351878--8351917	21	1.9	21	84	0	53	20	5	0	75	0.99
8354131--8354211	13	6.3	13	69	19	55	76	1	3	18	1.00
8354168--8354211	15	2.9	15	86	10	54	81	0	4	13	0.83
8354649--8354798	51	2.9	50	82	4	174	36	16	6	40	1.74
8354688--8354785	52	1.9	51	91	2	160	33	17	7	41	1.77
8355330--8355543	69	3.1	69	85	0	284	36	13	19	30	1.90
8355468--8355649	86	2.1	86	87	0	256	37	13	18	31	1.89
8356832--8356897	24	2.8	22	82	13	62	4	15	6	74	1.18
8356840--8356897	24	2.5	22	86	8	71	3	13	6	75	1.13
8360656--8360701	14	3.4	13	82	8	56	78	2	2	17	0.96
8360672--8360765	32	3.0	31	75	21	104	73	3	3	20	1.11
8360668--8360760	26	3.7	26	72	11	77	74	2	3	20	1.07
8360705--8360764	18	3.2	18	71	13	50	76	1	3	18	1.00
8361229--8361334	51	2.1	51	85	0	140	33	14	9	43	1.77
8368851--8368897	2	23.5	2	95	0	85	53	0	0	46	1.00
8369444--8369502	16	3.8	16	71	15	52	28	1	1	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8371486--8371517	12	2.7	12	100	0	64	0	9	34	56	1.32
8372360--8372386	2	13.5	2	100	0	54	0	48	0	51	1.00
8388586--8388813	40	5.1	43	61	29	102	43	4	18	33	1.70
8388550--8388823	90	3.0	90	100	0	548	41	4	18	35	1.71
8388603--8388747	47	3.2	47	62	25	119	43	4	18	33	1.69
8389068--8389177	35	3.1	35	62	17	82	40	5	24	29	1.77
8389048--8389186	71	2.0	71	91	2	226	42	5	25	26	1.75
8390840--8390888	22	2.1	23	85	14	66	44	0	4	51	1.20
8391022--8391231	105	2.0	105	100	0	420	26	31	17	24	1.97
8403274--8403299	2	13.0	2	100	0	52	50	0	0	50	1.00
8403299--8403347	2	24.5	2	100	0	98	51	0	48	0	1.00
8408678--8408723	24	1.9	23	83	16	58	47	2	0	50	1.13
8416628--8416660	17	1.9	17	93	0	57	87	3	9	0	0.63
8424254--8424286	9	3.3	10	87	12	50	33	3	0	63	1.10
8424313--8424354	13	3.2	13	80	6	50	21	2	7	69	1.25
8437342--8437379	12	3.1	13	88	7	53	10	13	7	68	1.39
8438755--8438788	2	17.0	2	87	0	50	52	2	0	44	1.16
8453842--8453916	29	2.6	29	74	17	75	37	16	6	40	1.74
8464097--8464145	15	3.3	15	76	0	53	65	16	0	18	1.28
8465108--8465156	14	3.4	14	83	8	62	24	0	8	67	1.18
8471827--8472203	84	4.5	83	76	6	330	31	16	16	35	1.92
8471892--8472196	169	1.8	169	85	1	432	31	15	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8473003--8473032	10	2.9	10	95	5	51	60	10	10	20	1.57
8473599--8473626	14	2.0	14	100	0	56	14	7	28	50	1.69
8476434--8476554	3	38.7	3	72	15	61	29	3	3	63	1.26
8476453--8476554	24	4.4	24	70	17	81	28	3	1	65	1.21
8476464--8476552	48	1.9	48	88	6	139	28	4	1	66	1.18
8476458--8476567	20	5.1	20	73	20	71	26	4	0	68	1.15
8477572--8477745	61	2.9	60	85	5	228	44	5	12	37	1.66
8477728--8477760	15	2.3	15	89	5	50	63	9	0	27	1.24
8477862--8477899	14	2.6	15	88	12	53	10	13	0	76	1.02
8488248--8488280	15	2.3	15	89	5	50	87	3	6	3	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130