genome.fa.s556.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  66  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13826331--13826382	19	2.6	19	84	9	59	48	0	0	51	1.00
13826341--13826402	21	2.9	21	85	4	79	46	1	0	51	1.10
13828608--13828648	21	2.0	20	85	4	55	51	4	0	43	1.23
13829214--13829867	330	2.0	329	86	3	915	41	8	9	40	1.67
13830306--13830376	25	2.9	23	82	14	79	15	1	1	81	0.83
13830314--13830394	13	6.4	13	71	21	64	16	3	1	79	0.95
13830332--13830394	7	8.9	7	81	14	60	15	3	0	80	0.83
13830339--13830417	8	10.2	8	79	14	60	20	3	0	75	0.95
13830334--13830420	7	12.7	7	75	21	53	20	3	0	75	0.94
13831294--13831363	21	3.4	21	67	9	54	24	0	4	71	1.04
13831331--13831386	4	15.2	4	75	20	52	17	1	0	80	0.80
13831331--13831386	18	3.1	19	85	12	73	17	1	0	80	0.80
13831340--13831392	14	3.8	13	85	11	70	16	3	0	79	0.88
13831392--13831737	118	3.0	118	86	6	465	45	5	12	36	1.66
13831392--13831737	121	3.0	118	87	6	465	45	5	12	36	1.66
13835679--13835742	19	3.4	19	76	18	62	79	0	14	6	0.91
13835655--13835742	17	5.2	17	70	18	60	77	0	14	7	0.99
13835679--13835725	10	4.9	9	82	12	58	82	0	12	4	0.80
13837093--13837198	43	2.5	42	77	16	117	34	11	18	34	1.87
13837496--13837853	41	8.7	41	86	6	444	23	14	20	41	1.89
13837475--13837853	123	3.1	122	88	4	550	23	14	19	41	1.89
13838119--13838156	19	2.1	19	90	5	60	18	2	2	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13838174--13838228	4	14.2	4	77	11	53	25	5	0	69	1.10
13838800--13838836	19	1.9	19	88	0	56	54	0	43	2	1.14
13839100--13839205	12	8.3	12	69	14	52	18	1	2	76	1.00
13839104--13839191	11	8.4	10	73	15	63	20	1	3	75	1.02
13839169--13839210	9	5.0	8	81	18	50	14	4	0	80	0.86
13839224--13839615	58	6.7	58	79	10	372	44	6	11	36	1.67
13839356--13839613	114	2.3	113	85	7	335	43	6	12	37	1.68
13840226--13840420	99	2.0	97	83	9	245	45	5	12	36	1.65
13852106--13852133	2	14.0	2	100	0	56	50	0	0	50	1.00
13857096--13857146	5	10.0	5	83	12	59	82	13	3	0	0.81
13857099--13857162	16	3.9	16	84	10	76	81	12	4	1	0.92
13857357--13857395	10	3.9	10	86	0	51	82	0	12	5	0.83
13858151--13858203	27	2.0	25	85	7	70	32	43	20	3	1.70
13858883--13859164	143	2.0	143	96	1	523	39	12	15	32	1.85
13862077--13862128	26	1.9	27	81	14	63	57	3	3	34	1.35
13862412--13862491	31	2.6	30	82	11	90	47	3	5	43	1.43
13864276--13864503	99	2.3	99	95	1	404	40	17	5	35	1.73
13864681--13864748	30	2.3	30	87	5	93	39	11	16	32	1.84
13864929--13865126	100	2.0	98	84	7	256	40	18	8	32	1.81
13866363--13866491	43	3.0	43	95	0	240	48	13	10	27	1.75
13868660--13868690	1	31.0	1	100	0	62	0	0	0	100	0.00
13868937--13868966	15	2.1	14	93	6	51	63	3	0	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13875684--13875715	3	10.7	3	100	0	64	31	0	0	68	0.90
13876632--13876675	22	2.0	22	82	4	54	77	0	15	6	0.97
13879438--13879472	16	2.1	17	89	5	54	28	0	2	68	1.04
13879425--13879645	99	2.3	97	79	6	245	42	3	3	50	1.35
13879468--13879704	99	2.4	98	83	4	280	40	4	3	51	1.39
13879313--13879653	183	1.9	180	80	7	395	41	4	3	50	1.41
13880069--13880492	106	4.0	106	83	2	474	37	9	11	42	1.72
13880067--13880500	213	2.0	213	83	1	548	36	9	10	42	1.72
13884860--13884921	30	2.1	30	87	0	88	45	8	8	38	1.63
13885309--13885400	42	2.2	43	82	7	109	40	8	14	36	1.76
13885534--13885563	14	2.1	15	93	6	53	46	10	0	43	1.37
13885742--13885794	22	2.4	22	84	6	72	56	1	7	33	1.38
13887056--13887088	17	1.9	17	93	0	57	69	9	0	21	1.15
13894181--13894227	22	2.2	20	85	14	58	12	4	2	80	0.94
13899886--13899947	19	3.2	19	77	8	79	40	8	9	41	1.67
13906411--13906454	23	2.0	23	86	4	63	40	4	2	52	1.34
13908675--13908718	16	2.6	17	82	7	54	59	2	2	36	1.23
13909781--13909822	15	2.6	17	78	14	54	57	7	0	35	1.26
13909761--13909822	31	2.0	31	83	0	79	51	6	0	41	1.27
13909854--13909880	7	3.9	7	100	0	54	44	14	0	40	1.46
13911256--13911292	20	1.9	18	89	10	56	81	10	2	5	0.96
13911251--13911306	28	2.0	28	85	3	76	78	12	1	7	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13917236--13917264	2	14.5	2	100	0	58	48	0	51	0	1.00
13924291--13924334	17	2.6	17	82	10	54	65	0	2	31	1.05
13924782--13924840	22	2.7	23	73	17	63	77	3	0	18	0.90
13925148--13925462	160	2.0	160	90	1	497	50	7	6	35	1.56
13926012--13926052	20	2.0	20	86	9	57	78	2	7	12	1.06
13926015--13926061	18	2.7	17	75	12	51	82	2	6	8	0.90
13926089--13926141	28	1.9	28	84	3	72	49	0	7	43	1.31
13926670--13926713	19	2.4	18	76	3	52	59	6	0	34	1.24
13927629--13927681	24	2.2	24	83	3	72	49	1	5	43	1.37
13927880--13927915	18	2.0	18	88	0	54	44	5	0	50	1.25
13928282--13928330	22	2.2	23	85	3	64	57	0	2	40	1.10
13928331--13928369	15	2.6	15	87	0	51	53	0	7	38	1.30
13928278--13928439	55	2.7	55	75	18	132	53	0	4	41	1.25
13928348--13928398	23	2.3	23	86	6	70	54	0	9	35	1.33
13931237--13931261	2	12.5	2	100	0	50	52	0	0	48	1.00
13936550--13936576	11	2.5	11	100	0	54	48	0	7	44	1.31
13940851--13940900	24	2.0	25	84	3	66	52	4	0	44	1.20
13941122--13941198	23	3.4	22	72	13	66	49	3	2	44	1.34
13941232--13941266	14	2.6	13	86	8	52	45	0	2	51	1.16
13941371--13941433	24	2.6	25	89	2	92	47	3	0	49	1.17
13941379--13941433	25	2.2	24	90	3	83	47	3	0	49	1.19
13942775--13942810	2	19.0	2	88	11	58	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13946379--13946564	93	2.0	93	96	0	345	46	9	7	36	1.65
13948796--13949336	58	9.1	56	81	12	570	33	11	8	46	1.70
13948887--13949335	57	7.7	58	85	8	563	33	12	7	46	1.71
13949450--13949486	17	2.1	17	90	5	56	75	2	0	21	0.92
13949450--13949487	9	4.2	9	86	10	51	76	2	0	21	0.91
13950310--13950417	32	3.4	30	75	20	94	66	1	7	24	1.27
13950407--13950588	4	46.2	4	69	21	68	67	2	1	28	1.14
13950407--13950484	18	4.4	18	78	12	63	70	1	0	28	0.95
13950428--13950481	3	18.7	3	78	17	53	68	0	0	31	0.90
13950424--13950486	23	2.7	23	78	14	67	68	0	0	31	0.90
13950436--13950589	62	2.4	61	76	16	154	65	2	1	29	1.17
13950422--13950597	17	10.8	16	68	19	80	66	2	1	28	1.16
13951055--13951105	2	25.5	2	91	0	84	45	3	0	50	1.20
13966121--13966145	2	12.5	2	100	0	50	48	0	0	52	1.00
13968029--13968078	23	2.1	24	88	3	75	46	2	16	36	1.58
13968282--13968312	16	1.9	16	93	0	53	51	0	0	48	1.00
13969558--13969597	21	2.0	21	85	5	55	20	2	0	77	0.88
13970062--13970106	14	3.3	14	78	6	56	20	8	0	71	1.12
13970579--13970628	20	2.6	18	87	12	64	76	2	2	20	0.99
13970585--13970639	15	3.8	15	79	15	62	74	1	1	21	1.01
13971064--13971109	12	3.8	12	88	0	65	41	0	0	58	0.98
13976906--13976941	8	4.5	8	86	13	56	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13987792--13987820	3	9.7	3	100	0	58	0	31	0	68	0.89
13988202--13988238	18	2.1	18	94	0	65	29	10	13	45	1.77
13993046--13993123	34	2.3	33	80	4	93	44	12	2	39	1.56
14004555--14004724	94	1.8	94	80	3	209	38	5	34	21	1.77
14006198--14006256	20	2.9	20	72	20	59	22	3	5	69	1.23
14008693--14008973	58	4.7	59	78	8	284	44	6	13	35	1.69
14008691--14008987	120	2.5	116	85	8	382	44	6	13	36	1.69
14013378--14013433	30	1.9	28	85	7	76	69	0	19	10	1.17
14013383--14013468	31	2.8	30	73	16	77	73	0	19	6	1.06
14014158--14014281	63	2.0	63	91	0	203	37	8	24	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130