genome.fa.s556.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  18  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5053049--5053085	12	3.2	12	85	7	51	86	0	10	2	0.67
5054016--5054055	20	2.0	21	85	5	55	40	22	0	37	1.54
5054390--5054487	33	3.0	33	76	5	101	32	20	16	30	1.94
5054509--5054583	33	2.3	33	88	6	109	44	12	12	32	1.78
5054509--5054602	32	2.9	33	81	9	104	40	15	13	29	1.87
5054636--5054722	34	2.7	32	75	10	86	36	13	14	34	1.86
5054749--5054911	35	4.8	35	78	8	167	34	21	18	25	1.96
5054749--5054911	68	2.4	67	78	10	170	34	21	18	25	1.96
5054896--5054960	33	2.0	33	96	0	121	43	13	12	30	1.81
5055443--5055494	7	7.4	7	91	0	59	73	17	3	5	1.19
5055493--5055517	3	8.3	3	100	0	50	68	0	0	32	0.90
5056128--5056191	26	2.5	26	86	0	83	51	18	6	23	1.69
5059699--5059856	51	3.1	51	73	5	142	37	17	16	28	1.92
5059720--5059830	17	6.5	17	71	5	64	35	15	19	29	1.93
5059952--5060635	119	5.7	121	75	6	514	46	13	20	19	1.84
5060238--5060636	121	3.3	119	76	8	369	47	14	20	18	1.83
5060045--5060636	242	2.5	237	80	6	631	47	14	19	19	1.83
5077257--5077336	20	3.9	20	71	19	58	57	6	0	36	1.24
5077257--5077354	31	3.2	31	80	8	94	60	7	0	32	1.24
5077379--5077437	24	2.5	24	82	0	64	62	6	0	30	1.21
5077615--5077654	10	4.2	9	81	12	53	67	0	2	30	1.04
5077615--5077650	19	1.9	19	94	5	65	69	0	2	27	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5077809--5077854	20	2.3	20	88	0	65	32	2	2	63	1.19
5077819--5077881	10	6.8	9	75	12	56	30	0	1	68	0.99
5077818--5077861	20	2.2	20	91	0	70	29	0	2	68	1.02
5077797--5077906	10	11.3	10	73	14	52	25	1	3	69	1.15
5077937--5077989	20	2.8	18	81	16	54	22	0	15	62	1.32
5079590--5079625	17	2.1	17	89	0	54	16	2	0	80	0.83
5079584--5079685	22	4.5	22	75	11	73	19	3	2	73	1.12
5079585--5079646	15	4.3	14	76	15	56	17	1	1	79	0.90
5081131--5081158	4	7.0	4	100	0	56	25	0	0	75	0.81
5081159--5081215	20	2.8	20	78	10	62	29	28	1	40	1.67
5086352--5086470	62	1.9	62	84	3	159	32	9	15	42	1.78
5086411--5086567	84	1.9	84	84	5	210	31	14	16	37	1.88
5087795--5087842	5	9.8	5	78	13	55	16	6	0	77	0.97
5090790--5090946	78	2.0	79	96	1	289	29	7	7	56	1.54
5095021--5095054	18	1.9	17	88	5	50	61	8	2	26	1.40
5096604--5096636	16	1.9	18	88	11	52	54	3	6	36	1.41
5097272--5097297	12	2.2	12	100	0	52	50	0	7	42	1.31
5102370--5102431	28	2.2	28	80	5	72	43	4	1	50	1.33
5104223--5104266	21	2.1	21	95	0	79	54	15	4	25	1.60
5104281--5104329	25	2.0	25	84	8	64	32	6	4	57	1.42
5104745--5105011	129	2.1	129	99	0	525	37	10	8	42	1.71
5107211--5107250	18	2.3	18	86	4	55	15	0	2	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5110734--5110795	31	2.0	31	96	0	115	40	29	11	19	1.86
5114250--5114301	21	2.4	21	84	9	70	38	5	0	55	1.24
5115772--5115809	19	2.0	20	89	5	60	47	0	2	50	1.15
5124604--5124638	14	2.5	14	90	9	54	45	0	0	54	0.99
5127858--5127884	14	1.9	14	100	0	54	18	14	14	51	1.76
5128373--5128407	17	2.1	17	89	5	54	37	0	0	62	0.95
5128409--5128457	21	2.5	19	78	12	53	28	4	2	65	1.22
5128410--5128479	24	2.9	24	73	12	63	24	4	1	70	1.14
5129248--5129280	5	6.6	5	86	13	50	21	0	0	78	0.75
5129381--5129588	111	1.9	111	82	10	268	47	6	10	35	1.63
5129489--5129678	61	3.0	60	78	10	202	49	5	9	35	1.59
5129489--5129671	68	2.9	62	80	10	201	49	5	9	34	1.59
5141696--5141732	12	3.2	12	81	18	51	32	0	0	67	0.91
5141698--5141732	17	2.1	16	94	5	61	34	0	0	65	0.93
5141730--5141837	3	35.0	3	76	17	89	29	3	0	65	1.16
5141727--5141834	47	2.3	47	88	4	157	29	3	0	65	1.16
5142669--5142706	17	2.2	17	86	13	51	23	0	0	76	0.79
5142772--5142973	59	3.3	60	75	13	196	49	5	8	36	1.57
5144876--5144938	29	2.2	29	88	5	92	47	19	4	28	1.69
5148430--5148500	23	3.0	24	70	15	76	54	0	7	38	1.27
5148590--5148801	101	2.0	107	84	10	287	44	1	5	48	1.35
5148741--5148874	71	1.9	71	93	0	232	44	3	5	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5148736--5148885	71	2.1	71	88	1	228	44	4	6	44	1.49
5149492--5149538	20	2.2	22	77	14	62	14	21	17	46	1.83
5149497--5149539	20	2.2	20	91	0	68	18	23	16	41	1.89
5149632--5149669	3	12.7	3	100	0	76	68	0	0	31	0.90
5149742--5149850	51	2.1	53	81	10	127	61	9	10	19	1.54
5150082--5150148	22	3.0	22	69	16	66	52	0	5	41	1.26
5150754--5150787	17	1.9	18	94	5	61	44	0	5	50	1.26
5150322--5150923	301	2.0	300	92	2	1012	42	4	6	46	1.51
5150892--5150939	12	4.0	12	78	10	53	39	2	8	50	1.44
5152387--5152440	26	2.1	25	86	10	74	55	0	0	44	0.99
5157066--5157104	20	2.0	20	89	0	60	30	0	7	61	1.24
5158173--5158203	15	2.0	16	93	6	55	83	0	16	0	0.64
5158173--5158239	27	2.4	27	76	11	73	77	0	20	1	0.85
5158176--5158239	11	5.8	11	75	12	60	78	0	20	1	0.84
5158174--5158223	18	2.7	18	81	3	55	82	0	18	0	0.68
5159095--5159133	16	2.4	16	73	0	51	82	0	10	7	0.86
5159623--5159690	31	2.2	30	82	10	82	32	7	7	52	1.57
5159634--5159694	31	1.9	32	90	3	97	29	8	8	54	1.59
5159674--5159850	55	3.2	55	80	10	218	28	5	11	55	1.56
5159779--5159824	22	2.0	23	87	4	67	23	2	10	63	1.38
5159776--5159838	20	3.0	20	80	11	72	26	1	11	60	1.40
5159770--5159892	53	2.3	55	77	5	126	29	4	13	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5159973--5160034	24	2.6	24	82	7	81	35	3	8	53	1.47
5160155--5160249	18	5.0	18	75	13	84	35	3	8	52	1.48
5160095--5160249	58	2.7	57	78	15	142	34	3	10	51	1.52
5160235--5160276	13	3.1	13	80	19	50	35	9	14	40	1.78
5161445--5161497	26	2.0	26	96	0	97	30	13	7	49	1.69
5161579--5161768	35	5.3	35	70	12	127	25	16	8	49	1.73
5161526--5161778	36	6.9	36	71	12	144	27	16	8	47	1.75
5161795--5162174	48	8.0	48	74	14	261	27	20	4	47	1.69
5161750--5162048	140	2.2	140	94	2	523	26	20	5	47	1.71
5163394--5163438	2	22.5	2	100	0	90	48	0	0	51	1.00
5174524--5174572	25	2.0	25	95	0	89	36	12	18	32	1.88
5177192--5177229	17	2.3	17	81	4	51	50	0	2	47	1.15
5179076--5179107	13	2.4	14	94	5	57	71	0	3	25	1.00
5180329--5180466	55	2.5	55	84	2	188	30	11	12	45	1.77
5182635--5182669	3	11.7	3	100	0	70	68	0	0	31	0.90
5183314--5183383	19	3.8	19	81	12	92	60	7	1	31	1.33
5183309--5183389	37	2.2	37	97	0	153	61	8	1	28	1.33
5183331--5183398	11	5.7	11	72	14	55	60	8	1	29	1.36
5186429--5186472	17	2.8	16	83	16	56	20	0	2	77	0.88
5187496--5187760	82	3.2	81	87	5	343	39	19	13	27	1.89
5187391--5187760	42	8.9	41	83	4	325	39	19	14	27	1.90
5188041--5188146	43	2.5	42	78	10	115	33	15	13	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5189516--5189547	10	2.8	12	81	18	50	6	15	0	78	0.95
5189506--5189579	29	2.6	29	82	8	89	9	20	0	70	1.15
5191221--5191280	28	2.1	28	87	0	84	36	21	21	20	1.95
5191705--5191934	109	2.1	110	98	0	444	43	9	11	35	1.73
5191989--5192119	30	4.4	29	73	12	97	47	29	0	22	1.52
5191992--5192125	44	3.0	43	82	5	153	48	30	0	20	1.50
5191992--5192106	15	7.7	15	78	5	99	47	31	0	20	1.51
5191992--5192228	14	16.2	14	70	9	118	48	28	0	22	1.54
5192138--5192278	72	2.0	72	85	4	196	50	24	0	24	1.54
5192397--5192493	14	6.9	14	70	15	67	49	29	0	20	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130